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Created with Raphaël 2.2.023Oct16121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025SRAtoolkit: nf update psmn configHTSeq: nf update psmn configBowtie: nf update psmn configBWA: nf update psmn configsambamba: nf update psmn configBowtie2: nf update config for psmnRSEM: nf update indexing config for psmnnf module: update executor from psmn to sgeMultiQC: nf update psmn configRSEM: nf update psmn configUrQt: cleanup old configMUSIC: update psmn confignf config file update nf syntax for processchange occurences of sge into psmnnf config: rename sge to psmnTP_experimental_biologists.md: update with new nf pathKallisto: update nf config for PSMNBEDtools: update nf config file for PSMNUrQt: update nf config file for the PSMNcutadapt: update nf config files for the PSMNMerge branch 'dev'README.md: add new tools to the tableMerge branch 'Delattre/JU28_59vs17_SNP-master' into dev to get BWA GATK sambamba samblaster and bcftoolsrestore bowtie2 from devrm SNP_calling scripts1_JU28_59vs17_SNP_calling.sh: change genome ref for intersect_SNP.Rintersect_SNP.R: fix getting sequences partSNP_calling.config: fix module load for SGE1_JU28_59vs17_SNP_calling.sh: add analysis of final_assembly.fasta1_JU28_59vs17_SNP_calling.sh: add PSMN cmdSNP_calling.config: add bioawk for sgeSNP_calling.config: rename some module to loadSNP_calling.nf: add SGE config1_JU28_59vs17_SNP_calling.sh: test of blastSNP_calling.nf: cleanup gatk code1_JU28_59vs17_SNP_calling.sh: blast of 5S on the assemblyintersect_SNP.R: add enzyme selectionSNP_calling.nf: fix formatbcftools: add docker file and rm from SAMtools1_JU28_59vs17_SNP_calling.R: add SNP alert