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Created with Raphaël 2.2.06Mar54120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025bwa: fix warining in testsnf_modules: add singularity in config files and tests.shdeeptools: add singularity to filescutadapt: add singularity to nf files and add -resume to all tests.shnf_modules: update config files to match psmn lowercase module namesupdate_tools.sh: add update tool for psmn moduleupdate psmn_modules to lowercase versionupdate psmn_modulesupdate_tools.sh: auto update for singularity docker and nf modulessingularity build.sh: add error catch on builducsc: add singularity filestrimmomatic: add singularity filestophat: add singularity filessratoolkit: add singularity filessamblaster: add singularity filessalmon: add singularity filesrsem: add singularity filespigz: add singularity filespicard: add PicardCommandLine for singularitypicard: add singularity filessamtools: add singularity filesmultiqc: add singularity fileskallisto: add singularity fileshtseq: add singularity fileshisat2: add singularity filesgatk: add singularity filesdeeptools: add singularity filesfile_handle: add singularity filescutadapt: add singularity filescanu: add singularity filesbioawk: add singularity filesbcftools: add singularity filesfastqc: add singularity to nf filesupdate link for all modules names to lowercaserename module to lowercasefastqc: add singularity filesBowtie2: add singularity to nf filesBowtie: add singularity to nf filesBowtie: add singularity files and add signature for singularity buildBWA: add singularity def