Commits · daa8a701ae52e3110d59ccedbb86e4a5cd7fc45f · nfontrod / nextflow

"README.md" did not exist on "17863439bd15469fd8481fb33c9f33c234e0ea02"

Jun 06, 2018
- Rnaseq.config : config for mapping_fastq and index_fasta · daa8a701
  nfontrod authored 6 years ago
  
  daa8a701
- Rnaseq.nf : index_fasta and mapping_fasta · 9ec5b176
  nfontrod authored 6 years ago
  
  9ec5b176
- Rnaseq.config :config fasta_from_bed · 811bd6bf
  nfontrod authored 6 years ago
  
  811bd6bf
- Rnaseq.nf : adding process fasta_from_bed · 02f41b4f
  nfontrod authored 6 years ago
  
  02f41b4f
- Rnaseq.nf : correct trimming process · 6b3092bb
  nfontrod authored 6 years ago
  
  6b3092bb
- Rnaseq.config : addition of trimming config · 2992a141
  nfontrod authored 6 years ago
  
  2992a141
- Rnaseq.nf : add trimming process · 240b4d6d
  nfontrod authored 6 years ago
  
  240b4d6d
- Rnaseq.config : docker config for adaptor_removal process · b04822b5
  nfontrod authored 6 years ago
  
  b04822b5
- Rnaseq.nf : creating process adaptor_removal · ce348ae2
  nfontrod authored 6 years ago
  
  ce348ae2
- fasta_sampler.nt : output modification · 514305e3
  nfontrod authored 6 years ago
  
  514305e3
- fasta_sampler.nf : publish · 8cdb9175
  nfontrod authored 6 years ago
  
  8cdb9175
- fasta_sampler.nf : Chanel definition · 3f28a4a0
  nfontrod authored 6 years ago
  
  3f28a4a0
- fasta_sampler_TP1 : add process sample_fasta · 46210bc9
  nfontrod authored 6 years ago
  
  46210bc9
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  3454e1e8
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored 6 years ago
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored 6 years ago
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored 6 years ago
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  52d58451
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored 6 years ago
  
  b6575e65
- UrQt: fix docker container version · 4d440098
  Laurent Modolo authored 6 years ago
  
  4d440098
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  8aee48b9
Jun 05, 2018
- docker_modules: fix path · 1c45e57b
  Laurent Modolo authored 6 years ago
  
  1c45e57b
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  705226a9
- correctly mv nf_modules · 4fa9a1b1
  Laurent Modolo authored 6 years ago
  
  4fa9a1b1
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
- rm src/nf_test.config · a0fea3c5
  Laurent Modolo authored 6 years ago
  
  a0fea3c5
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored 6 years ago
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored 6 years ago
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored 6 years ago
  
  91613eea
Jun 04, 2018
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored 6 years ago
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored 6 years ago
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored 6 years ago
  
  5b1011f6
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored 6 years ago
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored 6 years ago
  
  f594ce88
- SAMtools.config: fix container name · 2a51f02d
  Laurent Modolo authored 6 years ago
  
  2a51f02d
- SAMtools: add nf and test scripts · e77f630e
  Laurent Modolo authored 6 years ago
  
  e77f630e