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Unverified Commit 45be00ec authored by Laurent Modolo's avatar Laurent Modolo
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BWA: add sambamba and samblaster to docker

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FROM ubuntu:18.04 FROM sambamba:0.6.7
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
ENV BWA_VERSION=0.7.17 ENV BWA_VERSION=0.7.17
ENV SAMBLASTER_VERSION=0.1.24
ENV PACKAGES curl=7.58.0* \ ENV PACKAGES curl=7.58.0* \
ca-certificates=20180409 \ ca-certificates=20180409 \
build-essential=12.4* \ build-essential=12.4* \
...@@ -18,3 +20,11 @@ make && \ ...@@ -18,3 +20,11 @@ make && \
cp bwa /usr/bin && \ cp bwa /usr/bin && \
cd .. && \ cd .. && \
rm -R bwa-${BWA_VERSION}/ rm -R bwa-${BWA_VERSION}/
RUN curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
cd samblaster-v.${SAMBLASTER_VERSION}/ && \
make && \
cp samblaster /usr/bin && \
cd .. && \
rm -R samblaster-v.${SAMBLASTER_VERSION}/
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