CHANGELOG.md



Changelog
All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog,
and this project adheres to Semantic Versioning.

[0.2.7] - 2018-10-23

Added

Add new tools (BWA, GATK, sambamba, ...)


Changed


sge profile is now called psmn profile to prepare tests in the CCIN2P3
every psmn config file has an update configuration for mono or 16 cpus queues
update process naming to follow new nextflow format


[0.2.6] - 2018-08-23

Added

Added src/training_dataset.nf to build a small training dataset from NGS data


Changed

the structure of src/nf_modules: the tests folder was removed


[0.2.5] - 2018-08-22

Added

This fine changelog


Changed

the structure of src/nf_modules: the tests folder was removed


[0.2.4] - 2018-08-02

Changed

add paired_id variable in the output of every single-end data processes to match the paired output


[0.2.3] - 2018-07-25

Added

List of tools available as nextflow, docker or sge module to the README.md


[0.2.2] - 2018-07-23

Added

SRA module from cigogne/nextflow-master 52b510e4


[0.2.1] - 2018-07-23

Added

List of tools available as nextflow, docker or sge module


[0.2.0] - 2018-06-18

Added

doc/TP_computational_biologists.md
Kallisto/0.44.0


Changed

add paired_id variable in the output of every paired data processes
BEDtools: fixes for fasta handling
UrQt: fix git version in Docker


[0.1.2] - 2018-06-18

Added


doc/tp_experimental_biologist.md and Makefile to build the pdf
tests files for BEDtools


Changed

Kallisto: various fixes
UrQt: improve output and various fixes


Removed


src/nf_test.config modules have their own .config


[0.1.2] - 2018-06-18

Added


doc/tp_experimental_biologist.md and Makefile to build the pdf
tests files for BEDtools


Changed

Kallisto: various fixes
UrQt: improve output and various fixes


Removed


src/nf_test.config modules have their own .config


[0.1.0] - 2018-05-06
This is the first working version of the repository as a nextflow module repository