Skip to content
Snippets Groups Projects
Select Git revision
  • 231fd9e6a361a8095f07f32ce8c42b69f9409f8f
  • master default protected
  • tp_experimental_biologists
3 results

Bowtie2.def

Blame
    • Forked from LBMC / nextflow
    Source project has a limited visibility.
    tests.sh 606 B
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
    11
    12
    13
    14
    15
    16
    17
    18 
    

    

    

    nextflow src/nf_modules/Bowtie2/tests/index.nf \
  -c src/nf_modules/Bowtie2/bowtie2.config \
  -profile docker \
  --fasta "data/tiny_dataset/fasta/tiny_v2.fasta"

nextflow src/nf_modules/Bowtie2/tests/mapping_single.nf \
  -c src/nf_modules/Bowtie2/bowtie2.config \
  -profile docker \
  --index "data/tiny_dataset/fasta/*.bt2" \
  --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"

nextflow src/nf_modules/Bowtie2/tests/mapping_paired.nf \
  -c src/nf_modules/Bowtie2/bowtie2.config \
  -profile docker \
  --index "data/tiny_dataset/fasta/*.bt2" \
  --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq"