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LBMC / nextflow
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Laurent Modolo authoredLaurent Modolo authored
mapping_single.config 627 B
profiles {
docker {
docker.temp = 'auto'
docker.enabled = true
process {
withname: mapping_fastq {
container = "bowtie:1.2.2"
}
}
}
psmn {
process{
withname: mapping_fastq {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "Bowtie/1.2.2:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
penv = 'openmp16'
}
}
}
}