Skip to content
Snippets Groups Projects
Select Git revision
  • 1c45e57b20209a9aca36fdf94bd2c04a4233c1f3
  • master default protected
  • tp_experimental_biologists
3 results

Dockerfile

Blame
    • Forked from LBMC / nextflow
    Source project has a limited visibility.
    tests.sh 612 B
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
    11
    12
    13
    14
    15
    16
    17
    18 
    

    

    

    ./nextflow src/nf_modules/Bowtie2/indexing.nf \
  -c src/nf_modules/Bowtie2/indexing.config \
  -profile docker \
  --fasta "data/tiny_dataset/fasta/tiny_v2.fasta"

./nextflow src/nf_modules/Bowtie2/mapping_single.nf \
  -c src/nf_modules/Bowtie2/mapping_single.config \
  -profile docker \
  --index "data/tiny_dataset/fasta/*.bt2" \
  --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"

./nextflow src/nf_modules/Bowtie2/mapping_paired.nf \
  -c src/nf_modules/Bowtie2/mapping_paired.config \
  -profile docker \
  --index "data/tiny_dataset/fasta/*.bt2" \
  --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq"