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mherbett
nextflow
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d23019536d57a37e127f7378a84d5dc4af271f24
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2
master
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protected
tp_experimental_biologists
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Created with Raphaël 2.2.0
6
Jun
5
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31
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25
rnaseq.nf change fasta_extracted o fsta_files_extracted
master
master
RNAseq.n : remove channels and params, fasta_extacted from bedtools, fastq om UrQt fastq_files_trim
RNAseq.config : add config for kallisto
RNAseq.n : add kallisto block fo paid nd
rnasq.coni : add block config fo bedools
mRNAseq.n : corect eo astq to fasta in params.fastq
RNASEQ.nf : add block fo bedtools (do no emove channel)
RNASEQ.nf miy fo paid nd
RNASq.cni add conig for UrQt
RNASeq.nf : emove channel caion, and modiication of inpu fil m cutadap
RNASeq.nf : addin code fo UrQt for quality timming
RNASeq.nf : mov cod o qualiy imin, kp adaptao rmoval
RNASeq.nf : removed co o sinle end triming
RNASEQ.config : add code configuatio o cutadapt removal adaptatr
RNASeq.nf : add code for cutadapt
fasta_sampler : add }
fasta_sampler : output file dependent of the name of the input file
fasta_sample : add mode:copy
fasta_sampler : add channel
fasta_sample: add pocess
TP.md: add nextflow options
Merge branch 'master' of gitlab_lbmc:pipelines/nextflow
add sge config for some modules
TP.md: fix typo
TP.md: PSMN section
Kallisto.nf: fix paired end
Kallisto.nf: fix paired name
urqt.nf: improve input
trimming: make output channel more clear
TP.md: add info on project visibility
TP.md: add Kallisto section
TP.md: add bedtool section
BEDtools: add tests files
UrQt: fix docker container version
mv test.sh file from docker_modules to nf_modules
doc: add webide.png
TP.md: add cutadapt.config section
TP.md: add cutadapt and urqt section
TP.md: fasta_sampler section
TP.md: add definition of process and channel
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