RNAseq.config: correct }

src/RNAseq.config

@@ -64,16 +64,19 @@ profiles {
       withName: trimming {
         cpus = 4
         container = "lbmc/urqt:d62c1f8"
+	}
       withName: fasta_from_bed {
         container = "lbmc/bedtools:2.25.0"
         cpus = 1
+	}
       withName: index_fasta {
         container = "lbmc/kallisto:0.44.0"
         cpus = 4
+	}
       withName: mapping_fastq {
         container = "lbmc/kallisto:0.44.0"
         cpus = 4
-}
+	}
     }
   }
   singularity {
@@ -83,12 +86,15 @@ profiles {
       withName: trimming {
         cpus = 4
         container = "lbmc/urqt:d62c1f8"
+	}
       withName: fasta_from_bed {
         container = "lbmc/bedtools:2.25.0"
         cpus = 1
+	}
       withName: index_fasta {
         container = "lbmc/kallisto:0.44.0"
         cpus = 4
+	}
       withName: mapping_fastq {
         container = "lbmc/kallisto:0.44.0"
         cpus = 4      
@@ -107,6 +113,7 @@ profiles {
         time = "12h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
         penv = 'openmp16'
+	}
       withName: fasta_from_bed {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/bedtools_2.25.0"
@@ -116,6 +123,7 @@ profiles {
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
+	}
       withName: index_fasta {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/kallisto_0.44.0"
@@ -126,6 +134,7 @@ profiles {
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
         penv = 'openmp16'
+	}
       withName: mapping_fastq {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/kallisto_0.44.0"
@@ -154,6 +163,7 @@ profiles {
         "
         cpus = 1
         queue = 'huge'
+	}
       withName: fasta_from_bed {
         container = "lbmc/bedtools:2.25.0"
         scratch = true
@@ -163,6 +173,7 @@ profiles {
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
         cpus = 1
         queue = 'huge'
+	}
       withName: index_fasta {
         container = "lbmc/kallisto:0.44.0"
         scratch = true
@@ -173,6 +184,7 @@ profiles {
         "
         cpus = 1
         queue = 'huge'
+	}
       withName: mapping_fastq {
         container = "lbmc/kallisto:0.44.0"
         scratch = true
@@ -183,6 +195,7 @@ profiles {
         "
         cpus = 1
         queue = 'huge'
+	}
       }
     }
   }