Commits · 1d171512ec163c296c2f50b9d97aab03f451e9dc · lestrada / nextflow

06 Jun, 2018 31 commits
- RNA_Seq.nf: connecting channels in kallisto block · 1d171512
  lestrada authored Jun 06, 2018
  
  1d171512
- update · 46dc6c2d
  lestrada authored Jun 06, 2018
  
  46dc6c2d
- RNA_Seq.nf: add kallisto.config · 6d8968cd
  lestrada authored Jun 06, 2018
  
  6d8968cd
- RNA_Seq.nf: bedtools block · b174dd0b
  lestrada authored Jun 06, 2018
  
  b174dd0b
- RNA_Seq.config: add bedtools.config · c95acf78
  lestrada authored Jun 06, 2018
  
  c95acf78
- RNA_Seq.config: add urqt.config · fc82731b
  lestrada authored Jun 06, 2018
  
  fc82731b
- RNA_Seq.nf: channel update · b3747080
  lestrada authored Jun 06, 2018
  
  b3747080
- RNA_Seq.nf: adding urqt block · d5519a12
  lestrada authored Jun 06, 2018
  
  d5519a12
- RNA_Seq.config: block for cutadapt adaptor removal · 9ff3d2c5
  lestrada authored Jun 06, 2018
  
  9ff3d2c5
- RNQA_Seq.nf: cutadapt block · 6a290f9f
  lestrada authored Jun 06, 2018
  
  6a290f9f
- fasta_sampler.nf: output folder for several files · 2b8c0abf
  lestrada authored Jun 06, 2018
  
  2b8c0abf
- fasta_sampler.nf: specifying an output folder · bd2159a7
  lestrada authored Jun 06, 2018
  
  bd2159a7
- fasta_sampler.nf: Channel definition · 8a1e46c7
  lestrada authored Jun 06, 2018
  
  8a1e46c7
- fasta_sampler_TP1.nf: add process · 1d922006
  lestrada authored Jun 06, 2018
  
  1d922006
- TP.md: add nextflow options · 6289b049
  Laurent Modolo authored Jun 06, 2018
  
  6289b049
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · b8f2a45f
  Laurent Modolo authored Jun 06, 2018
  
  b8f2a45f
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored Jun 06, 2018
  
  3454e1e8
- TP.md: fix typo · 1e57a68d
  Laurent Modolo authored Jun 06, 2018
  
  1e57a68d
- TP.md: PSMN section · 98db0358
  Laurent Modolo authored Jun 06, 2018
  
  98db0358
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored Jun 06, 2018
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored Jun 06, 2018
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored Jun 06, 2018
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored Jun 06, 2018
  
  52d58451
- TP.md: add info on project visibility · 462e3dd0
  Laurent Modolo authored Jun 06, 2018
  
  462e3dd0
- TP.md: add Kallisto section · efbf5499
  Laurent Modolo authored Jun 06, 2018
  
  efbf5499
- TP.md: add bedtool section · 955c41f2
  Laurent Modolo authored Jun 06, 2018
  
  955c41f2
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored Jun 06, 2018
  
  b6575e65
- UrQt: fix docker container version · 4d440098
  Laurent Modolo authored Jun 06, 2018
  
  4d440098
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored Jun 06, 2018
  
  8aee48b9
- doc: add webide.png · d254a0d5
  Laurent Modolo authored Jun 06, 2018
  
  d254a0d5
- TP.md: add cutadapt.config section · 7449f56c
  Laurent Modolo authored Jun 06, 2018
  
  7449f56c
05 Jun, 2018 9 commits
- TP.md: add cutadapt and urqt section · f495e035
  Laurent Modolo authored Jun 05, 2018
  
  f495e035
- TP.md: fasta_sampler section · 8a2d1d85
  Laurent Modolo authored Jun 05, 2018
  
  8a2d1d85
- TP.md: add definition of process and channel · 46372ef3
  Laurent Modolo authored Jun 05, 2018
  
  46372ef3
- TP.md: add correction · 4ef2883d
  Laurent Modolo authored Jun 05, 2018
  
  4ef2883d
- TP.md: add nf_modules section · a0c710af
  Laurent Modolo authored Jun 05, 2018
  
  a0c710af
- TP.md: add sge_module section · 206b5fa6
  Laurent Modolo authored Jun 05, 2018
  
  206b5fa6
- TP.md: write docker_modules section · 4bd58c06
  Laurent Modolo authored Jun 05, 2018
  
  4bd58c06
- README.md : fix docker path · e4c2f33f
  Laurent Modolo authored Jun 05, 2018
  
  e4c2f33f
- docker_modules: fix path · 1c45e57b
  Laurent Modolo authored Jun 05, 2018
  
  1c45e57b