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Static website built with Jekyll. View it live at https://igfl.gitbiopages.ens-lyon.fr/websites/OldShack
## Description
This website stores a collection of notes that focus on explaining and illustrating bioinformatics methods and tools. Notes are generated from [Markdown](https://www.markdownguide.org/) documents and fall into one of two categories:
- **Short Posts** that provide mainstream informations about a broad-ranging topic,
- **Long Docs** that target a specific methodology and meticulously breaks it down.
---
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## Visuals
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## Support
For feedbacks, questions regarding the website or its content you can contact me:
- by e-mail: laurent.gilquin(at)ens-lyon.fr
- through the [Element group chat](https://app.element.io/#/room/!kVroSyHWQIFyqnSkyg:matrix.org) (require invite)
---
## Roadmap
- Modify [jekyll-regex-replace](https://github.com/joshdavenport/jekyll-regex-replace) plug-in to convert on the fly Markdown cite syntax to [jekyll-scholar](https://github.com/inukshuk/jekyll-scholar) syntax.
- Change the auto-generated Table of Contents to appear floated to the right side of the page, in order to improve page navigation.
- Change the website template to [Minimal Mistakes](https://github.com/mmistakes/minimal-mistakes).
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## Contributing
Found a typo in the documentation? Interested in adding a feature or
[fixing a bug][issues]? Then by all means [submit an issue][new-issue] or take a
stab at submitting a [pull request][using-pull-requests]. If this is your first
pull request, it may be helpful to read up on the [GitHub Flow][github-flow].
[issues]: https://gitbio.ens-lyon.fr/igfl/websites/OldShack/issues
[new-issue]: https://gitbio.ens-lyon.fr/igfl/websites/OldShack/issues/new
[using-pull-requests]: https://help.github.com/articles/using-pull-requests/
[github-flow]: https://guides.github.com/introduction/flow/
### Pull Requests
When submitting a pull request:
1. Clone the repo.
2. Create a branch off of `master` and give it a meaningful name (e.g.
`my-awesome-new-feature`) and describe the feature or fix.
3. Open a pull request on GitHub.
Long notes and short posts can be found respectively in the [`/docs`](docs) and [`/posts`](posts)
folders if you'd like to tackle any "low-hanging fruit" like fixing typos, bad
grammar, etc.
---
## Acknowledgments
### Jekyll template:
- [jekyll-theme-basically-basic](https://github.com/mmistakes/jekyll-theme-basically-basic)
### Jekyll gems:
- [jekyll-scholar](https://github.com/inukshuk/jekyll-scholar)
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### Icons:
- [Simple Icons](https://simpleicons.org/)
- [Noun Project](https://thenounproject.com)
### Other:
- [Jekyll](http://jekyllrb.com/)
- [Susy](http://susy.oddbird.net/)
- [Breakpoint](http://breakpoint-sass.com/)
---
## License
The MIT License (MIT)
Copyright (c) 2017-2021 Michael Rose and contributors
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
This website incorporates icons from [The Noun Project](https://thenounproject.com/).
Icons are distributed under Creative Commons Attribution 3.0 United States (CC BY 3.0 US).
Copyright (c) 2017, Miriam Eric Suzanne.
Susy is distributed under the terms of the [BSD 3-clause "New" or "Revised" License](https://opensource.org/licenses/BSD-3-Clause).
This website incorporates [Breakpoint](http://breakpoint-sass.com/).