Skip to content
Snippets Groups Projects
Commit 1268c8e2 authored by Gilquin's avatar Gilquin
Browse files

illustrate some options

parent d00619ab
No related branches found
No related tags found
No related merge requests found
......@@ -54,7 +54,7 @@ export_embeddings(Sobject, res_vec, cmap, savedir, assay="SCT", device = "png")
# -------------------------------------------------------------------------
# choose clustering resolution (the number of clusters)
ident <- "SCT_snn_res.0.7"
ident <- "SCT_snn_res.0.4"
Idents(Sobject) <- ident
# -------------------------------------------------------------------------
......@@ -77,9 +77,10 @@ export_heatmap(
# -------------------------------------------------------------------------
# visualization of genes: "GFP", "Mef2" and "twi"
features <- c("GFP","Mef2","twi")
features <- c("tnc","unpg","twi")
visualize_markers(
Sobject, features, ident, cmap, "GMt", savedir, device = "png"
Sobject, features, ident, cmap, "GMt", savedir, device = "png", scale.min = 0,
scale.max = 100
)
# -------------------------------------------------------------------------
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment