Commits · a0c710af55666edc15242e88876c4f06d7bc5d81 · hpolvech / nextflow_TP2017

Jun 05, 2018
- TP.md: add nf_modules section · a0c710af
  Laurent Modolo authored 6 years ago
  
  a0c710af
- TP.md: add sge_module section · 206b5fa6
  Laurent Modolo authored 6 years ago
  
  206b5fa6
- TP.md: write docker_modules section · 4bd58c06
  Laurent Modolo authored 6 years ago
  
  4bd58c06
- README.md : fix docker path · e4c2f33f
  Laurent Modolo authored 6 years ago
  
  e4c2f33f
- docker_modules: fix path · 1c45e57b
  Laurent Modolo authored 6 years ago
  
  1c45e57b
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  705226a9
- correctly mv nf_modules · 4fa9a1b1
  Laurent Modolo authored 6 years ago
  
  4fa9a1b1
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
- TP_experimental_biologists.md: add project organisation section · 6630bba3
  Laurent Modolo authored 6 years ago
  
  6630bba3
- doc : add img folder for the TP · d5897bfa
  Laurent Modolo authored 6 years ago
  
  d5897bfa
- TP_experimental_biologists.md: add images · 0633f516
  Laurent Modolo authored 6 years ago
  
  0633f516
- rm src/nf_test.config · a0fea3c5
  Laurent Modolo authored 6 years ago
  
  a0fea3c5
- doc/ ignore .pdf files · a23dc446
  Laurent Modolo authored 6 years ago
  
  a23dc446
- TP_experimental_biologists.md: add cmd for pdf · 8f2097a6
  Laurent Modolo authored 6 years ago
  
  8f2097a6
- Makefile: build TP.pdf · a583b718
  Laurent Modolo authored 6 years ago
  
  a583b718
- Merge branch 'master' into 'master' · ddc4ddae
  Laurent Modolo authored 6 years ago
  
  add TP_experimental_biologists.md file See merge request pipelines/nextflow!1
  ddc4ddae
- add TP_experimental_biologists.md file · d1932982
  Laurent Modolo authored 6 years ago
  
  d1932982
- README.md: add tests section · 8f9a3e6d
  Laurent Modolo authored 6 years ago
  
  8f9a3e6d
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored 6 years ago
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored 6 years ago
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored 6 years ago
  
  91613eea
Jun 04, 2018
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored 6 years ago
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored 6 years ago
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored 6 years ago
  
  5b1011f6
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored 6 years ago
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored 6 years ago
  
  f594ce88
- SAMtools.config: fix container name · 2a51f02d
  Laurent Modolo authored 6 years ago
  
  2a51f02d
- SAMtools: add nf and test scripts · e77f630e
  Laurent Modolo authored 6 years ago
  
  e77f630e
Jun 01, 2018
- UrQt: add tests · 051b3925
  Laurent Modolo authored 6 years ago
  
  051b3925
- UrQt: add tests, nf and config · 86a16ba6
  Laurent Modolo authored 6 years ago
  
  86a16ba6
- cutadapt.nf: improve description · a55eb6da
  Laurent Modolo authored 6 years ago
  
  a55eb6da
- cutadapt: add tests and config · 2c488dbf
  Laurent Modolo authored 6 years ago
  
  2c488dbf
May 31, 2018
- cutadapt.config: add config file for docker · ae7f6a84
  Laurent Modolo authored 6 years ago
  
  ae7f6a84
- cutadapt.nf: add trimming script · 9ae3505c
  Laurent Modolo authored 6 years ago
  
  9ae3505c
- cutadapt.nf: adaptator trimming code for paired and single-ends · aafb78a0
  Laurent Modolo authored 6 years ago
  
  aafb78a0
- CONTRIBUTING.md : add temporary guide · d2301953
  Laurent Modolo authored 6 years ago
  
  d2301953