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Created with Raphaël 2.2.026Jun15147654131May3025src/docker_modules/R: add docker recipe for R compilation from sourcernaseqrnaseqsrc/RNASeq.nf: do not print intermediary resultsRNASeq.nf: trimming process now works on paired filesRNASeq.nf: remove argument inputs for mappingRNASeq.nf and .config: add mapping process with KallistoRNASeq.nf and .config: add Bedtool fasta-from-bed processMerge branch 'master' of https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow into rnaseqFAQ.txt: created (answers received from Laurent Modolo)RNASeq.config: add profile for trimming processRNASeq.nf: connect processesRNASeq.nf: add trimming with urqtRNASeq.nf: remove single-end processRNASeq.config: createdRNASeq.nf: created, with call of cutadaptfasta_sampler.nf: individualize output filenamesfasta_sampler.nf: add output dirfasta_sampler.nf: add initial channelfasta_sampler.nf: createdbonjour.nf: further trials, still unclearmastermasterbonjour.nf: now 2 processesexplorerexplorerbonjour.nf: for basic testREADME.md : add infos on forking and syncingnotes.txt: file addedpaired.nf files : pass the pair_id information in outputbedtools.nf: fix fasta paramsfasta_sampler: add output dirUrQt: Dockerfile fix git versionfasta_sampler: fix comment syntaxfasta_sampler: add comment linesfasta_sampler.nf: add initial channelfasta_sampler: file created for this processTP.md: add nextflow optionsMerge branch 'master' of gitlab_lbmc:pipelines/nextflowadd sge config for some modulesTP.md: fix typoTP.md: PSMN sectionKallisto.nf: fix paired endKallisto.nf: fix paired nameurqt.nf: improve inputtrimming: make output channel more clear