Bowtie2: add samtools to Dockerfile

f594ce88 · Laurent Modolo · 2a51f02d · f594ce88
Verified Commit f594ce88 authored 6 years ago by Laurent Modolo
--- a/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile
+++ b/src/nf_modules/Bowtie2/2.3.4.1/Dockerfile
@@ -2,7 +2,10 @@ FROM ubuntu:18.04
 MAINTAINER Laurent Modolo

 ENV BOWTIE2_VERSION=2.3.4.1
-ENV PACKAGES bowtie2=${BOWTIE2_VERSION}*
+ENV SAMTOOLS_VERSION=1.7
+ENV PACKAGES bowtie2=${BOWTIE2_VERSION}* \
+    samtools=${SAMTOOLS_VERSION}*
+

 RUN apt-get update && \
    apt-get install -y --no-install-recommends ${PACKAGES} && \