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Makefile

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  • Forked from CAN / UNIX command line
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    tests.sh 602 B
    cp data/tiny_dataset/map/tiny_v2.bam data/tiny_dataset/map/tiny_v2_control.bam
    ./nextflow src/nf_modules/macs2/peak_calling.nf \
      -c src/nf_modules/macs2/peak_calling.config \
      -profile docker \
      -resume \
      --bam "data/tiny_dataset/map/tiny_v2*.bam" \
      --genome_size 129984 \
      --control_tag "control"
    
    if [ -x "$(command -v singularity)" ]; then
      ./nextflow src/nf_modules/macs2/peak_calling.nf \
        -c src/nf_modules/macs2/peak_calling.config \
        -profile singularity \
        -resume \
        --bam "data/tiny_dataset/map/tiny_v2*.bam" \
        --genome_size 129984 \
        --control_tag "control"
    fi