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tests.sh 602 B
cp data/tiny_dataset/map/tiny_v2.bam data/tiny_dataset/map/tiny_v2_control.bam
./nextflow src/nf_modules/macs2/peak_calling.nf \
-c src/nf_modules/macs2/peak_calling.config \
-profile docker \
-resume \
--bam "data/tiny_dataset/map/tiny_v2*.bam" \
--genome_size 129984 \
--control_tag "control"
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/macs2/peak_calling.nf \
-c src/nf_modules/macs2/peak_calling.config \
-profile singularity \
-resume \
--bam "data/tiny_dataset/map/tiny_v2*.bam" \
--genome_size 129984 \
--control_tag "control"
fi