Skip to content
Snippets Groups Projects
Forked from LBMC / Hub / formations / ENS M1 ML
23 commits behind the upstream repository.
main.tex 6.24 KiB
%\documentclass{beamer}
%\usetheme{Amsterdam}

\documentclass[aspectratio=169,xcolor=dvipsnames]{beamer}
\usetheme{SimplePlus}

\usepackage[latin1]{inputenc}
\usepackage{array}
\usepackage{graphics,multirow}
\usepackage{graphicx}
\usepackage{natbib}
\usepackage{color, colortbl}


\usepackage{hyperref}
\usepackage{graphicx} % Allows including images
\usepackage{booktabs} % Allows the use of \toprule, \midrule and \bottomrule in tables


\setbeamersize{text margin left=0.5cm}
\setbeamersize{text margin right=0.5cm}
\setbeamertemplate{navigation symbols}{}


%\maketitle

%\definecolor{gris}{rgb}{0.9,0.9,0.9}
\definecolor{gris}{gray}{0.5}
\definecolor{bleufonce}{rgb}{0,0,0.5}
\definecolor{vertfonce}{rgb}{0,0.5,0}
\definecolor{purple}{rgb}{0.5,0,0.5}
\color{bleufonce} %\pagecolor{gris}
\definecolor{LightCyan}{rgb}{0.373,0.553,0.827} %52.9, 66.7, 87.1
\definecolor{bleuclair1}{rgb}{0.137,0.466,0.741}
\definecolor{bleuclair2}{rgb}{0.686,0.686, 0.914}
\definecolor{bleuclair3}{rgb}{0.843, 0.843, 0.957}
\definecolor{darkorange}{rgb}{0.255,0.140,0}
\definecolor{deeppink}{rgb}{1.0, 0.08, 0.58}
\definecolor{coquelicot}{rgb}{1.0, 0.22, 0.0}
\definecolor{cerisepink}{rgb}{0.93, 0.23, 0.51}



\DeclareMathOperator{\card}{Card} 
\DeclareMathOperator{\var}{Var} 
\newcommand{\telque}{\,:\,}
\newcommand{\FDR}{\mbox{FDR}}
\newcommand{\FDP}{\mbox{FDP}}
\newcommand{\FDPQ}{\mbox{FDQ}_{\gamma}}
\newcommand{\FWER}{\mbox{FWER}}


\newcommand{\X}{\bm{X}}
\newcommand{\Z}{\bm{Z}}
\newcommand{\W}{\bm{W}}
\newcommand{\K}{\bm{K}}
\newcommand{\ind}{1\!\!1}

\newcommand{\Abf}{{\bf A}}
\newcommand{\Bcal}{\mathcal{B}}
\newcommand{\C}{C}
\newcommand{\Esp}{\mathbb{E}}
\newcommand{\eps}{\varepsilon}
\newcommand{\epsbar}{\overline{\eps}}
\newcommand{\etabar}{\overline{\eta}}
\newcommand{\fbf}{{\bf f}}
\newcommand{\Gcal}{\mathcal{G}}
\newcommand{\Hbf}{{\bf H}}
\newcommand{\Ibb}{\mathbb{I}}
\newcommand{\Kcal}{\mathcal{K}}
\newcommand{\lambdabar}{\overline{\lambda}}
\newcommand{\Lcal}{\log \mathcal{L}}
\newcommand{\Mcal}{\mathcal{M}}
\newcommand{\Ncal}{\mathcal{N}}
\newcommand{\Pcal}{\mathcal{P}}
\newcommand{\Qcal}{\mathcal{Q}}
\newcommand{\Acal}{\mathcal{A}}
\newcommand{\pibar}{\overline{\pi}}
\newcommand{\pibf}{\mbox{\mathversion{bold}{$\pi$}}}
\newcommand{\alphabf}{\mbox{\mathversion{bold}{$\alpha$}}}
\newcommand{\zetabf}{\mbox{\mathversion{bold}{$\zeta$}}}
\newcommand{\gammabf}{\mbox{\mathversion{bold}{$\gamma$}}}
\newcommand{\nubf}{\mbox{\mathversion{bold}{$\nu$}}}
\newcommand{\thetabf}{\mbox{\mathversion{bold}{$\theta$}}}
\newcommand{\taubf}{\mbox{\mathversion{bold}{$\tau$}}}
\newcommand{\betabf}{\mbox{\mathversion{bold}{$\beta$}}}
\newcommand{\mubf}{\mbox{\mathversion{bold}{$\mu$}}}
\newcommand{\varepsilonbf}{\mbox{\mathversion{bold}{$\varepsilon$}}}
\newcommand{\phibf}{\mbox{\mathversion{bold}{$\phi$}}}
\newcommand{\Omegabf}{\mbox{\mathversion{bold}{$\Omega$}}}
\newcommand{\rhobar}{\overline{\rho}}
\newcommand{\Sbf}{{\bf S}}
\newcommand{\Vcal}{\mathcal{V}}
\newcommand{\Vsf}{\mathsf{V}}
\newcommand{\Xcal}{\mathcal{X}}
\newcommand{\Zbf}{{\bf Z}}
\newcommand{\bbf}{{\bf b}}
\newcommand{\Ebf}{{\bf E}}
\newcommand{\Dbf}{{\bf D}}
\newcommand{\Bbf}{{\bf B}}
\newcommand{\Tbf}{{\bf T}}
\newcommand{\Ubf}{{\bf U}}
\newcommand{\Wbf}{{\bf W}}
\newcommand{\Ybf}{{\bf Y}}
\newcommand{\Vbf}{{\bf V}}
\newcommand{\Ibf}{{\bf I}}
\newcommand{\Cbf}{{\bf C}}
\newcommand{\Gbf}{{\bf G}}
\newcommand{\Rbf}{{\bf R}}
\newcommand{\Xbf}{{\bf X}}
\newcommand{\Zcal}{\mathcal{Z}}
\newcommand{\wbf}{{\bf w}}
\newcommand{\mbf}{{\bf m}}
\newcommand{\tbf}{{\bf t}}
\newcommand{\dbf}{{\bf d}}
\newcommand{\cbf}{{\bf c}}
\newcommand{\ebf}{{\bf e}}
\newcommand{\xbf}{{\bf x}}
\newcommand{\ybf}{{\bf y}}
\newcommand{\zbf}{{\bf z}}
\newcommand{\vbf}{{\bf v}}
\newcommand{\ubf}{{\bf u}}
\newcommand{\zero}{\mathbf{0}}
\newcommand{\pvalue}{$p$-value$\,$}
\newcommand{\pvalues}{$p$-values$\,$}
\newcommand{\minp}{$\min$-$p\,$}


%% symbol in math mode
\newcommand\NN{\mathbb{N}} 
\newcommand\ZZ{\mathbb{Z}}
\newcommand\QQ{\mathbb{Q}} 
\newcommand\RR{\mathbb{R}}
\newcommand\CC{\mathbb{C}}
\newcommand\EE{\mathbb{E}}
\newcommand\HH{\mathbb{H}}
\newcommand\II{\mathbf{1}}
\newcommand\gts[1]{\og#1\fg} 
\newcommand\ab\allowbreak 
\newcommand{\deriv}{\mathrm{d}}
\renewcommand{\arraystretch}{1.5}
\newcommand\PP{\mathbb{P}}
\newcommand{\tr}[1]{\ensuremath{#1^{T}}} % transposed notation
\newcommand{\trr}[1]{\ensuremath{#1^{\, T}}}
\newcommand{\mb}[1]{\ensuremath{\mathbf{#1}}} % bold letter in math
\newcommand{\mbg}[1]{\ensuremath{\boldsymbol{#1}}} % bold symbol in math
\newcommand\argmax{\text{argmax}}
\newcommand\argmin{\text{argmin}}
\newcommand\Var{\text{Var}}
\newcommand\Cov{\text{Cov}}
\newcommand\like{\mathcal{L}}
\newcommand\Poi{\mathcal{P}}
\newcommand\Gam{\Gamma}
\newcommand\multin{\mathcal{M}}
\newcommand\NB{\mathcal{NB}}
\newcommand\bern{\mathcal{B}}
\newcommand\msum{{\textstyle\sum}}
\newcommand\mprod{{\textstyle\prod}}
\newcommand\id{\text{Id}}
\newcommand\rank{\text{rank}}
\newcommand\prox{\text{Prox}}
\newcommand\sgn{\text{sgn}}
\newcommand\KL{\text{KL}}
\newcommand\msc{\scriptsize}
\newcommand\cond{\text{---}}
\newcommand\logit{\text{logit}}


\renewcommand*{\thefootnote}{\fnsymbol{footnote}}


\title[DimRed]{\textbf{Introduction to clustering}}
\author[F. Picard]{Ghislain Durif, Laurent Modolo, Franck Picard\\ \vspace{0.5cm}}
\institute[LBMC]{Laboratoire Biologie et Mod\'elisation de la Cellule, CNRS ENS-Lyon}

\date{
    \vspace{1cm}
    \small
    \url{franck.picard@ens-lyon.fr}
}




%\setbeamercolor{background canvas}{bg=gray}

\begin{document}

\begin{frame}
\titlepage
\end{frame}
\AtBeginSection[]
{\begin{frame}<beamer>
    \frametitle{Outline}
    \tableofcontents[currentsection,hideallsubsections]
  \end{frame}
}
\include{introduction}
\include{hclust}
\include{kmeans}
\include{graph_clustering}
\include{postclustering}


\begin{frame}{References}

\begin{itemize}
    \item \url{https://towardsdatascience.com/}
    \item  \href{http://cazencott.info/dotclear/public/lectures/IntroML_Azencott.pdf}{Introduction to Machine Learning (C. Azencott)}
    \item \href{https://www.imo.universite-paris-saclay.fr/~giraud/Orsay/Bookv3.pdf}{Introduction to High Dimensional Statistics (C. Giraud)}
    
\end{itemize}
\begin{small}
\bibliographystyle{plain}
\bibliography{biblio}	
\nocite{PCANatMeth}
\nocite{pmid30617341}
\end{small}
\end{frame}
\end{document}