nf modules singularity: remove logs for in2p3

src/nf_modules/samtools/sort_bams.config

@@ -43,7 +43,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }
@@ -60,7 +60,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }

src/nf_modules/samtools/split_bams.config

@@ -42,7 +42,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }
@@ -59,7 +59,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }

src/nf_modules/sratoolkit/fastqdump.config

@@ -42,7 +42,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }
@@ -59,7 +59,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }

src/nf_modules/urqt/trimming_paired.config

@@ -43,7 +43,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }
@@ -60,7 +60,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }

src/nf_modules/urqt/trimming_single.config

@@ -43,7 +43,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }
@@ -60,7 +60,7 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n\
-        -o ~/logs/ -e ~/logs/"
+        "
         cpus = 1
         queue = 'huge'
       }