Unverified Commit 2a00f4d5 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

in2p3.pbs: update pbs to use training_dataset.nf

parent 036e8214
......@@ -20,10 +20,12 @@ NF=/pbs/throng/lbmc/cl7/nextflow/${NF_VERSION}/nextflow
# change to your username
SCRATCH=/sps/lbmc/lmodolo/
# change to your project / pipeline !
PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf
PIPELINE=${SCRATCH}/nextflow/src/training_dataset.nf
# change to your project / pipeline !
CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config
CONFIG=${SCRATCH}/nextflow/src/training_dataset.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
--fasta "${SCRATCH}/nextflow/data/genome.fa" \
--fastq_single "${SCRATCH}/nextflow/data/*_R1.fastq.gz" \
--chromosome "X" --start 5305683 --stop 5333928 -resume
-w "${SCRATCH}"
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