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Verified Commit b87a994a authored by Laurent Modolo's avatar Laurent Modolo
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samtools: add compatbility with mutlqc

parent e9175cbd
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...@@ -270,7 +270,7 @@ process stats_bam { ...@@ -270,7 +270,7 @@ process stats_bam {
output: output:
tuple val(file_id), path("*.tsv"), emit: tsv tuple val(file_id), path("*.tsv"), emit: tsv
tuple val(file_id), path("*.flagstat.txt"), emit: report path "*.flagstat.txt", emit: report
script: script:
""" """
samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}.flagstat.txt samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}.flagstat.txt
......
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