Select Git revision
Forked from
LBMC / nextflow
877 commits behind the upstream repository.
Laurent Modolo authored
tests.sh 786 B
./nextflow src/nf_modules/fastp/fastp_paired.nf \
-c src/nf_modules/fastp/fastp_paired.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
./nextflow src/nf_modules/fastp/fastp_single.nf \
-c src/nf_modules/fastp/fastp_single.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_S.fastq" \
-resume
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/fastp/fastp_paired.nf \
-c src/nf_modules/fastp/fastp_paired.config \
-profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
./nextflow src/nf_modules/fastp/fastp_single.nf \
-c src/nf_modules/fastp/fastp_single.config \
-profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_S.fastq" \
-resume
fi