covid_comp_alldginn.txt

"Gene.name"	"File"	"Name"	"GeneSize"	"dginn-primate_NbSpecies"	"dginn-primate_omegaM0Bpp"	"dginn-primate_omegaM0codeml"	"dginn-primate_BUSTED"	"dginn-primate_BUSTED.p.value"	"dginn-primate_MEME.NbSites"	"dginn-primate_MEME.PSS"	"dginn-primate_BppM1M2"	"dginn-primate_BppM1M2.p.value"	"dginn-primate_BppM1M2.NbSites"	"dginn-primate_BppM1M2.PSS"	"dginn-primate_BppM7M8"	"dginn-primate_BppM7M8.p.value"	"dginn-primate_BppM7M8.NbSites"	"dginn-primate_BppM7M8.PSS"	"dginn-primate_codemlM1M2"	"dginn-primate_codemlM1M2.p.value"	"dginn-primate_codemlM1M2.NbSites"	"dginn-primate_codemlM1M2.PSS"	"dginn-primate_codemlM7M8"	"dginn-primate_codemlM7M8.p.value"	"dginn-primate_codemlM7M8.NbSites"	"dginn-primate_codemlM7M8.PSS"	"bats_File"	"bats_Name"	"bats_GeneSize"	"bats_NbSpecies"	"bats_omegaM0Bpp"	"bats_omegaM0codeml"	"bats_BUSTED"	"bats_BUSTED_p.value"	"bats_MEME_NbSites"	"bats_MEME_PSS"	"bats_BppM1M2"	"bats_BppM1M2_p.value"	"bats_BppM1M2_NbSites"	"bats_BppM1M2_PSS"	"bats_BppM7M8"	"bats_BppM7M8_p.value"	"bats_BppM7M8_NbSites"	"bats_BppM7M8_PSS"	"bats_codemlM1M2"	"bats_codemlM1M2_p.value"	"bats_codemlM1M2_NbSites"	"bats_codemlM1M2_PSS"	"bats_codemlM7M8"	"bats_codemlM7M8_p.value"	"bats_codemlM7M8_NbSites"	"bats_codemlM7M8_PSS"	"bats_Lucie.s.comments"	"bats_Action.taken"	"status"
"1"	"AAR2"	"AAR2_sequences_filtered_longestORFs_mafft_mincov_prank"	"AAR2_all"	601	24	"0.138510454262"	"0.105"	"N"	"0.9333"	1	"264"	"N"	"0.9999992818091265"	0	"na"	"N"	"0.9999999748811209"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"AAR2_sequences_filtered_longestORFs_mafft_prank"	"AAR2"	543	12	"0.111382448975"	"0.103"	"N"	1	0	"na"	"N"	"0.9999998011153564"	0	"na"	"N"	"0.0883931847285696"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2574319154136435"	0	"na"	""	""	"shared"
"2"	"AASS"	"AASS_sequences_filtered_longestORFs_mafft_mincov_prank"	"AASS_all"	1460	24	"0.146308728224"	"0.136"	"N"	"0.4684"	8	"345, 464, 840, 841, 1194, 1235, 1238, 1375"	"N"	"0.9999992149344861"	0	"na"	"N"	"0.9999999473147924"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8344353586953767"	0	"na"	"AASS_sequences_filtered_longestORFs_mafft_prank"	"AASS"	1418	12	"0.168200575660"	"0.165"	"N"	0.0514	8	"44, 54, 65, 336, 360, 382, 384, 729"	"N"	"0.7898559819260855"	0	"na"	"Y"	"3.993698374833498e-08"	13	"41, 42, 54, 65, 165, 382, 545, 577, 642, 845, 906, 914, 921"	"N"	"0.3072787386016008"	0	"na"	"Y"	"0.00623236128209284"	0	""	""	""	"shared"
"3"	"AATF"	"AATF_sequences_filtered_longestORFs_mafft_mincov_prank"	"AATF_all"	814	24	"0.272118991707"	"0.273"	"Y"	"0.0000"	10	"7, 133, 236, 291, 307, 426, 548, 549, 602, 720"	"N"	"0.9999990153742446"	0	"na"	"N"	"0.999382674275042"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2615839537910964"	0	"na"	"AATF_sequences_filtered_longestORFs_mafft_prank"	"AATF"	795	11	"0.212648396462"	"0.208"	"N"	0.9809	6	"136, 140, 162, 182, 449, 669"	"N"	"0.999998128316225"	0	"na"	"N"	"0.37817758541461555"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8869204367172543"	0	"na"	""	""	"shared"
"4"	"ABCC1"	"ABCC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ABCC1_all"	2124	19	"0.117080897867"	"0.075"	"Y"	"0.0000"	16	"272, 293, 307, 437, 599, 606, 685, 779, 784, 863, 1175, 1257, 1272, 1291, 1394, 1888"	"N"	"0.9999991891657932"	0	"na"	"Y"	"0.0021604753086363598"	2	"1115, 1257"	"N"	"0.9841273200556575"	0	"na"	"N"	"0.1394568562148886"	0	"na"	"ABCC1_sequences_filtered_longestORFs_mafft_prank"	"ABCC1"	1909	11	"0.114988754568"	"0.104"	"N"	1	16	"276, 297, 302, 461, 467, 545, 627, 689, 856, 958, 1288, 1319, 1417, 1568, 1667, 1901"	"N"	"0.9999988430397351"	0	"na"	"Y"	"0.00010463851231527765"	2	"581, 914"	"N"	"1.0"	0	"na"	"N"	"0.14427991674283228"	0	"na"	""	""	"shared"
"5"	"ACAD9"	"ACAD9_sequences_filtered_longestORFs_mafft_mincov_prank"	"ACAD9_all"	922	23	"0.246774938393"	"0.207"	"Y"	"0.0000"	15	"4, 22, 45, 190, 305, 413, 660, 716, 724, 738, 773, 854, 857, 871, 878"	"N"	"0.9999987144691737"	0	"na"	"N"	"0.3262991387891095"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.09053669869792183"	0	"na"	"ACAD9_sequences_filtered_longestORFs_mafft_prank"	"ACAD9"	892	11	"0.181748589596"	"0.186"	"Y"	0.0074	7	"7, 8, 22, 137, 513, 609, 778"	"N"	"0.9739193853272009"	0	"na"	"Y"	"0.006776994523459932"	1	"2"	"N"	"0.5504605431263127"	0	"na"	"Y"	"0.02413722558780989"	0	""	""	""	"shared"
"6"	"ACADM"	"ACADM_sequences_filtered_longestORFs_mafft_mincov_prank"	"ACADM_all"	924	25	"0.199060639609"	"0.153"	"Y"	"0.0000"	12	"375, 465, 479, 485, 552, 561, 605, 623, 687, 739, 839, 853"	"Y"	"0.037704182279039634"	0	""	"Y"	"0.00023100528073301762"	3	"479, 687, 739"	"Y"	"0.033273300180114804"	0	""	"Y"	"0.000697505610900003"	2	"479, 739"	"ACADM_sequences_filtered_longestORFs_mafft_prank"	"ACADM"	528	12	"0.488231418936"	"0.377"	"N"	0.0735	10	"58, 60, 192, 247, 290, 320, 338, 374, 436, 440"	"Y"	"0.010015777770694078"	1	"192"	"Y"	"7.993052097396971e-05"	2	"85, 192"	"Y"	"0.002283604872919489"	1	"192"	"Y"	"0.0007848640813105038"	2	"85, 192"	""	""	"shared"
"7"	"ACE2"	"ACE2_sequences_filtered_longestORFs_mafft_mincov_prank"	"ACE2_all"	890	26	"0.432922655586"	"0.430"	"Y"	"0.0000"	33	"60, 98, 111, 126, 164, 189, 205, 239, 251, 264, 323, 338, 358, 364, 376, 392, 397, 499, 503, 588, 589, 595, 605, 713, 724, 742, 759, 773, 795, 796, 826, 862, 886"	"Y"	"0.012293327895977004"	0	""	"Y"	"0.00030349501707917963"	2	"725, 799"	"Y"	"0.0010873627607257917"	1	"725"	"Y"	"1.4346565247265162e-05"	2	"725, 799"	"ACE2_sequences_filtered_longestORFs_mafft_prank"	"ACE2"	839	13	"0.524113947496"	"0.511"	"Y"	0	33	"3, 7, 24, 27, 39, 67, 74, 92, 93, 107, 120, 145, 187, 218, 233, 301, 313, 316, 331, 336, 444, 546, 583, 601, 624, 630, 632, 684, 692, 709, 723, 731, 793"	"Y"	"1.20435193825129e-18"	11	"24, 91, 214, 218, 444, 583, 692, 705, 709, 723, 725"	"Y"	"1.533421512785303e-22"	12	"24, 27, 91, 214, 218, 444, 583, 692, 705, 709, 723, 725"	"Y"	"5.483271214851269e-20"	11	"24, 91, 214, 218, 444, 583, 692, 705, 709, 723, 725"	"Y"	"1.7769031502716358e-22"	15	"24, 27, 91, 155, 214, 218, 233, 444, 546, 583, 692, 705, 709, 723, 725"	""	""	"shared"
"8"	"ACSL3"	"ACSL3_sequences_filtered_longestORFs_mafft_mincov_prank"	"ACSL3_all"	850	24	"0.086446706405"	"0.079"	"Y"	"0.0011"	5	"302, 326, 333, 444, 600"	"N"	"0.9999996550341761"	0	"na"	"N"	"0.8741931893713637"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.33823985668758066"	0	"na"	"ACSL3_sequences_filtered_longestORFs_mafft_prank_part1_prank"	"ACSL3_part1"	837	11	"0.075877266256"	"0.069"	"N"	0.547	2	"8, 435"	"N"	"0.9999995138724715"	0	"na"	"N"	"0.10145409742661003"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"9"	"ADAM9"	"ADAM9_sequences_filtered_longestORFs_mafft_mincov_prank"	"ADAM9_all"	1309	24	"0.240209874933"	"0.220"	"Y"	"0.0000"	12	"167, 329, 488, 655, 684, 996, 1078, 1179, 1186, 1197, 1227, 1238"	"N"	"0.4230114312876876"	0	"na"	"Y"	"0.0006544770263830813"	5	"152, 329, 684, 1078, 1238"	"N"	"0.14255890446757777"	0	"na"	"Y"	"0.01818787710445871"	2	"152, 1078"	"ADAM9_sequences_filtered_longestORFs_mafft_prank"	"ADAM9"	1010	12	"0.151318532704"	"0.148"	"Y"	0	8	"10, 210, 491, 605, 654, 848, 896, 974"	"N"	"0.74864566136963"	0	"na"	"Y"	"3.605120651439133e-05"	5	"151, 214, 848, 898, 974"	"N"	"0.6169298233734397"	0	"na"	"Y"	"0.029599435167906"	1	"974"	"Recombination: Mostly triggered by Cter splicing variants or something like that. So OK that GARD detects that.
- PS: Yes PS on the gene from visual inspection.
"	""	"shared"
"10"	"ADAM9[0-2769]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ADAM9_sequences_filtered_longestORFs_mafft_prank_frag0to2769"	"ADAM9[0-2769]"	923	12	"0.147847841639"	"0.142"	"Y"	0	7	"10, 210, 491, 605, 654, 848, 896"	"N"	"0.9926195006584168"	0	"na"	"Y"	"0.00036448136809578643"	5	"151, 214, 848, 896, 898"	"N"	"0.9389434736890376"	0	"na"	"N"	"0.1069921298530522"	0	"na"	""	""	"onlybats"
"11"	"ADAM9[0-3120]"	"ADAM9_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to3120"	"ADAM9_all[0-3120]"	1040	24	"0.204693987541"	"0.192"	"Y"	"0.0006"	6	"167, 329, 488, 655, 684, 996"	"N"	"0.5794521919918072"	0	"na"	"Y"	"0.0010537361735484209"	10	"152, 155, 329, 356, 422, 439, 488, 566, 568, 684"	"N"	"0.21459558975455112"	0	"na"	"N"	"0.11326783993560267"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"12"	"ADAM9[2768-3030]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ADAM9_sequences_filtered_longestORFs_mafft_prank_frag2768to3030"	"ADAM9[2768-3030]"	87	12	"0.173758026792"	"0.335"	"N"	1	0	"na"	"N"	"0.9999999961757169"	0	"na"	"N"	"0.9999900290329444"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9723883668012827"	0	"na"	""	""	"onlybats"
"13"	"ADAM9[3119-3927]"	"ADAM9_sequences_filtered_longestORFs_mafft_mincov_prank_frag3119to3927"	"ADAM9_all[3119-3927]"	269	24	"0.342199304876"	"0.327"	"Y"	"0.0102"	3	"146, 187, 198"	"N"	"0.9787629840012376"	0	"na"	"N"	"0.41593940307281285"	0	"na"	"N"	"0.9351952013367697"	0	"na"	"N"	"0.29552554475522397"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"14"	"ADAMTS1"	"ADAMTS1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ADAMTS1_all"	975	24	"0.127321473254"	"0.120"	"N"	"0.8764"	9	"20, 167, 213, 223, 237, 361, 475, 673, 915"	"N"	"0.9999998170205967"	0	"na"	"N"	"0.4285448408453565"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5615805837295651"	0	"na"	"ADAMTS1_sequences_filtered_longestORFs_mafft_prank"	"ADAMTS1"	1049	12	"0.084190392591"	"0.090"	"N"	1	7	"187, 205, 219, 281, 299, 307, 539"	"N"	"0.9999987026139255"	0	"na"	"N"	"0.20194392359999588"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8130196499872989"	0	"na"	""	""	"shared"
"15"	"AES"	"TLE5_sequences_filtered_longestORFs_D410gp2_prank"	"TLE5_410-2"	426	9	"0.177035832705"	"0.224"	"Y"	"0.0040"	1	"426"	"N"	"0.13619801249268904"	0	"na"	"N"	"0.09212218803320409"	0	"na"	"N"	"0.05596661089964485"	0	"na"	"Y"	"0.042214141814108"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"16"	"AGPS"	"AGPS_sequences_filtered_longestORFs_mafft_mincov_prank"	"AGPS_all"	1635	24	"0.092175503676"	"0.150"	"N"	"0.9783"	5	"629, 692, 695, 710, 855"	"N"	"0.9999954831661999"	0	"na"	"Y"	"0.02890632158493913"	10	"836, 843, 856, 861, 867, 871, 872, 887, 935, 984"	"N"	"1.0"	0	"na"	"N"	"0.5147880584564917"	0	"na"	"AGPS_sequences_filtered_longestORFs_mafft_prank"	"AGPS"	774	12	"0.190968764888"	"0.183"	"N"	0.3827	3	"15, 68, 177"	"N"	"0.10924333638405746"	0	"na"	"Y"	"0.002725849758125283"	2	"177, 437"	"Y"	"0.038388398017543686"	0	""	"Y"	"0.006139573510901918"	2	"177, 437"	""	""	"shared"
"17"	"AKAP8"	"AKAP8_sequences_filtered_longestORFs_mafft_mincov_prank"	"AKAP8_all"	1207	24	"0.207112322942"	"0.172"	"N"	"0.1358"	7	"240, 412, 1038, 1055, 1114, 1204, 1205"	"N"	"0.9999987441795993"	0	"na"	"N"	"0.5888118660773007"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.18562996914119032"	0	"na"	"AKAP8_sequences_filtered_longestORFs_mafft_prank"	"AKAP8"	1281	12	"0.237166871959"	"0.255"	"N"	0.3273	12	"263, 464, 505, 514, 607, 666, 979, 1001, 1019, 1028, 1029, 1120"	"N"	"0.9999981203026822"	0	"na"	"N"	"0.45532973557264145"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2882289930577096"	0	"na"	""	""	"shared"
"18"	"AKAP8L"	"AKAP8L_sequences_filtered_longestORFs_mafft_mincov_prank"	"AKAP8L_all"	1561	24	"0.103745703410"	"0.093"	"N"	"0.5401"	4	"255, 281, 512, 1312"	"N"	"0.9999988312790729"	0	"na"	"Y"	"0.0004578781311533793"	3	"281, 338, 1361"	"N"	"0.7882026910928299"	0	"na"	"N"	"0.12963920929034237"	0	"na"	"AKAP8L_sequences_filtered_longestORFs_mafft_prank"	"AKAP8L"	929	12	"0.157186383073"	"0.119"	"N"	0.9874	3	"125, 646, 720"	"N"	"0.9999983786623899"	0	"na"	"N"	"0.9999998763769403"	0	"na"	"N"	"0.17084475505743885"	0	"na"	"N"	"0.24536705645298887"	0	"na"	""	""	"shared"
"19"	"AKAP9"	"AKAP9_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"AKAP9_all_part1"	5475	23	"0.366459275969"	"0.276"	"Y"	"0.0000"	0	"na"	"Y"	"2.0041988652705565e-58"	2	"2215, 2889"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"AKAP9_sequences_filtered_longestORFs_mafft_prank"	"AKAP9"	4094	11	"0.323397640332"	"0.291"	"N"	0.5138	36	"26, 27, 86, 104, 372, 396, 998, 1069, 1117, 1132, 1255, 1256, 1299, 1347, 1426, 1484, 1593, 1754, 2005, 2094, 2588, 2605, 2670, 2677, 2830, 3113, 3309, 3438, 3636, 3665, 3666, 3679, 3741, 3810, 4041, 4090"	"Y"	"0.015062313266655393"	1	"3741"	"Y"	"0.0027809814147869926"	2	"2830, 3741"	"Y"	"1.0376156792378447e-05"	3	"2830, 3741, 3810"	"Y"	"1.0213197371756032e-07"	3	"2830, 3741, 3810"	""	""	"shared"
"20"	"ALG11"	"ALG11_sequences_filtered_longestORFs_mafft_mincov_prank"	"ALG11_all"	1025	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"ALG11_sequences_filtered_longestORFs_mafft_prank"	"ALG11"	538	11	"0.194574321694"	"0.198"	"Y"	0	8	"2, 18, 36, 55, 151, 329, 478, 503"	"N"	"0.999998892437065"	0	"na"	"N"	"0.7083628774335349"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9970044955027636"	0	"na"	""	""	"shared"
"21"	"ALG5"	"ALG5_sequences_filtered_longestORFs_mafft_mincov_prank"	"ALG5_all"	906	24	"0.212882633036"	"0.206"	"N"	"1.0000"	4	"156, 302, 341, 633"	"N"	"0.9999962240602492"	0	"na"	"Y"	"0.0018432526891259207"	2	"156, 302"	"N"	"0.9990004998331715"	0	"na"	"Y"	"0.007642733131900322"	2	"156, 302"	"ALG5_sequences_filtered_longestORFs_mafft_prank"	"ALG5"	775	11	"0.107671912945"	"0.126"	"N"	0.6701	1	"39"	"N"	"0.9999999440910885"	0	"na"	"N"	"0.9999943817677858"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"22"	"ALG8"	"ALG8_sequences_filtered_longestORFs_mafft_mincov_prank"	"ALG8_all"	1628	23	"0.200855712093"	"0.238"	"Y"	"0.0000"	8	"761, 889, 1029, 1043, 1046, 1138, 1496, 1501"	"N"	"0.999998840760544"	0	"na"	"N"	"0.9931549869921299"	0	"na"	"N"	"0.8676212564860656"	0	"na"	"N"	"0.5363330226131426"	0	"na"	"ALG8_sequences_filtered_longestORFs_mafft_prank"	"ALG8"	699	11	"0.198646076239"	"0.224"	"Y"	5e-04	4	"135, 360, 402, 442"	"N"	"0.9999989003482959"	0	"na"	"N"	"0.4219111924514076"	0	"na"	"N"	"0.37794749315818166"	0	"na"	"N"	"0.24907530463158667"	0	"na"	""	""	"shared"
"23"	"ANO6"	"ANO6_sequences_filtered_longestORFs_mafft_mincov_prank"	"ANO6_all"	2189	24	"0.113299720035"	"0.120"	"Y"	"0.0204"	0	"na"	"N"	"0.999999618935435"	0	"na"	"Y"	"5.110260093597033e-07"	9	"601, 883, 887, 940, 1066, 1115, 1761, 1785, 2099"	"N"	"0.9084640160674635"	0	"na"	"N"	"0.1510718088364588"	0	"na"	"ANO6_sequences_filtered_longestORFs_mafft_prank"	"ANO6"	1274	11	"0.148195788999"	"0.156"	"Y"	0.0018	8	"250, 634, 808, 832, 987, 1125, 1208, 1245"	"N"	"0.9999985065335079"	0	"na"	"Y"	"0.006517262523609501"	7	"301, 535, 634, 808, 810, 1125, 1253"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"24"	"AP2A2"	"AP2A2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"AP2A2_all_part1"	1531	24	"0.027643575412"	"0.029"	"Y"	"0.0000"	4	"88, 420, 424, 1090"	"N"	"0.9999998315543195"	0	"na"	"Y"	"1.8095362296896085e-06"	3	"1017, 1091, 1368"	"N"	"1.0"	0	"na"	"Y"	"0.0496379309806638"	0	""	"AP2A2_sequences_filtered_longestORFs_D102gp2_prank"	"AP2A2_102-2"	1281	9	"0.022994966217"	"0.023"	"N"	0.2936	1	"930"	"N"	"0.9999999991568984"	0	"na"	"Y"	"0.0192463155887868"	1	"915"	"N"	"1.0"	0	"na"	"N"	"0.9980019986669264"	0	"na"	"Sequences in 2 duplication groups: g2 and remaining."	""	"shared"
"25"	"AP2M1"	"AP2M1_sequences_filtered_longestORFs_mafft_mincov_prank"	"AP2M1_all"	584	24	"0.072008517084"	"0.060"	"Y"	"0.0120"	1	"368"	"N"	"0.9999990882533503"	0	"na"	"N"	"0.9999999822571227"	0	"na"	"N"	"0.30635828375793595"	0	"na"	"N"	"1.0"	0	"na"	"AP2M1_sequences_filtered_longestORFs_mafft_prank"	"AP2M1"	447	12	"0.001000000000"	"0.000"	"N"	1	0	"na"	"N"	"0.999999999992724"	0	"na"	"N"	"0.999996327206114"	0	"na"	"N"	"0.9970044955036704"	0	"na"	"N"	"0.9970044955036704"	0	"na"	""	""	"shared"
"26"	"AP3B1"	"AP3B1_sequences_filtered_longestORFs_mafft_mincov_prank"	"AP3B1_all"	2158	24	"0.165149043217"	"0.158"	"N"	"1.0000"	9	"593, 744, 746, 869, 895, 952, 999, 1425, 1549"	"N"	"0.9999998548792169"	0	"na"	"Y"	"0.01524795293177966"	3	"422, 898, 972"	"N"	"0.8967304174978962"	0	"na"	"N"	"0.13655879834501614"	0	"na"	"AP3B1_sequences_filtered_longestORFs_mafft_prank"	"AP3B1"	1656	12	"0.195164611351"	"0.173"	"N"	0.1654	10	"37, 304, 423, 775, 824, 867, 1305, 1326, 1329, 1334"	"N"	"0.8009669258447036"	0	"na"	"Y"	"0.00033704386982924165"	5	"304, 734, 767, 883, 1334"	"N"	"0.4597832942305451"	0	"na"	"N"	"0.1470474434083764"	0	"na"	""	""	"shared"
"27"	"ARF6"	"ARF6_sequences_filtered_longestORFs_D146gp2_prank"	"ARF6_146-2"	175	17	"0.031678100936"	"0.024"	"N"	"0.9989"	0	"na"	"N"	"0.9999999868317674"	0	"na"	"N"	"0.999990031600195"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	"ARF6_sequences_filtered_longestORFs_D116gp1_prank"	"ARF6_116-1"	175	11	"0.025386603383"	"0.011"	"N"	0.9143	0	"na"	"N"	"0.9999999986185912"	0	"na"	"N"	"0.9999800265648641"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"28"	"ARL6IP6"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ARL6IP6_sequences_filtered_longestORFs_mafft_prank"	"ARL6IP6"	408	12	"0.266455224369"	"0.286"	"Y"	0.0108	4	"11, 13, 29, 78"	"N"	"0.9999997679401801"	0	"na"	"N"	"0.3041011726478065"	0	"na"	"N"	"0.7139088399027278"	0	"na"	"N"	"0.2666015652764892"	0	"na"	""	""	"onlybats"
"29"	"ATE1"	"ATE1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"ATE1_all_part2"	4516	23	"0.216828954410"	"0.243"	"Y"	"0.0000"	8	"622, 623, 899, 1437, 1459, 1509, 3392, 3414"	"N"	"0.5004846977749202"	0	"na"	"Y"	"0.03708616346868175"	1	"1459"	"Y"	"8.916695916049465e-05"	6	"622, 623, 625, 627, 628, 1459"	"na"	"na"	0	"na"	"ATE1_bat_select_cut_mafft_prank"	"ATE1"	571	11	"0.155711039916073"	"0.147"	"N"	0.0691	22	"11, 17, 18, 27, 28, 29, 30, 108, 176, 223, 242, 243, 248, 251, 330, 346, 349, 350, 357, 361, 364, 571"	"N"	"0.999999862850937"	0	"na"	"N"	"0.99998620608549"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"30"	"ATP13A3"	"ATP13A3_sequences_filtered_longestORFs_mafft_mincov_prank"	"ATP13A3_all"	1667	24	"0.144099275342"	"0.141"	"N"	"0.5529"	3	"115, 157, 1530"	"N"	"0.49438735782234966"	0	"na"	"Y"	"7.555004772586708e-10"	16	"31, 88, 99, 102, 127, 652, 1139, 1148, 1149, 1150, 1156, 1157, 1266, 1273, 1315, 1316"	"N"	"0.43127902868882784"	0	"na"	"Y"	"0.03350703038270436"	3	"1149, 1150, 1316"	"ATP13A3_sequences_filtered_longestORFs_mafft_prank"	"ATP13A3"	1346	12	"0.148231630010"	"0.144"	"N"	0.6808	2	"1075, 1277"	"N"	"0.999999512150799"	0	"na"	"N"	"0.1808898839033816"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"31"	"ATP1B1"	"ATP1B1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ATP1B1_all"	399	25	"0.119938698901"	"0.110"	"N"	"0.3059"	2	"150, 331"	"N"	"0.9999969665860213"	0	"na"	"N"	"0.0946132023658145"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"ATP1B1_sequences_filtered_longestORFs_mafft_prank"	"ATP1B1"	730	12	"0.088215036349"	"0.087"	"Y"	1e-04	8	"26, 61, 63, 146, 530, 654, 661, 695"	"N"	"0.9999999800343178"	0	"na"	"Y"	"0.020573411749334792"	1	"520"	"N"	"1.0"	0	"na"	"N"	"0.09817536113918371"	0	"na"	""	""	"shared"
"32"	"ATP5MG"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ATP5MG_sequences_filtered_longestORFs_mafft_prank"	"ATP5MG"	193	12	"0.482859629606"	"0.466"	"N"	0.1388	0	"na"	"N"	"0.7895710018690529"	0	"na"	"N"	"0.22670251885481518"	0	"na"	"N"	"0.7672059499759533"	0	"na"	"N"	"0.11394948988008499"	0	"na"	""	""	"onlybats"
"33"	"ATP5MGL"	"ATP5MG_sequences_filtered_longestORFs_D338gp1_prank"	"ATP5MG_338-1"	175	9	"0.878149529906"	"0.951"	"N"	"0.5481"	4	"67, 114, 131, 146"	"N"	"0.4233875629011217"	0	"na"	"N"	"0.2828836689880944"	0	"na"	"N"	"0.2574319154137607"	0	"na"	"N"	"0.22046859952897824"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"34"	"ATP6AP1"	"ATP6AP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ATP6AP1_all"	523	24	"0.197452551824"	"0.161"	"Y"	"0.0032"	11	"21, 30, 31, 49, 121, 152, 303, 304, 305, 383, 445"	"N"	"0.9999985271744595"	0	"na"	"N"	"0.6083417436309067"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2109782988179196"	0	"na"	"ATP6AP1_sequences_filtered_longestORFs_mafft_prank"	"ATP6AP1"	512	12	"0.239150464842"	"0.191"	"Y"	0.0164	3	"34, 51, 293"	"N"	"0.16380542242532112"	0	"na"	"Y"	"0.0005380477529293749"	4	"9, 332, 335, 428"	"Y"	"0.04943977583125145"	0	""	"Y"	"0.002891441824662203"	1	"335"	""	""	"shared"
"35"	"ATP6V1A"	"ATP6V1A_sequences_filtered_longestORFs_mafft_mincov_prank"	"ATP6V1A_all"	644	23	"0.042230077137"	"0.034"	"Y"	"0.0002"	6	"143, 175, 181, 229, 318, 477"	"N"	"0.9999997399363904"	0	"na"	"N"	"0.9380739331044443"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8228346580562579"	0	"na"	"ATP6V1A_sequences_filtered_longestORFs_mafft_prank"	"ATP6V1A"	702	12	"0.037080871357"	"0.034"	"N"	0.9146	1	"175"	"N"	"0.9999999436427076"	0	"na"	"Y"	"0.0009886079904051323"	6	"18, 112, 175, 226, 648, 675"	"N"	"1.0"	0	"na"	"N"	"0.6784123432635414"	0	"na"	""	""	"shared"
"36"	"BAG5"	"BAG5_sequences_filtered_longestORFs_mafft_mincov_prank"	"BAG5_all"	926	24	"0.084971970061"	"0.089"	"N"	"1.0000"	1	"636"	"N"	"0.9999978009988431"	0	"na"	"N"	"0.9999999326018973"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"BAG5_sequences_filtered_longestORFs_mafft_prank"	"BAG5"	471	12	"0.054098018415"	"0.059"	"N"	1	0	"na"	"N"	"0.9999991971093135"	0	"na"	"N"	"0.44374587543466104"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9733612415242943"	0	"na"	""	""	"shared"
"37"	"BCKDK"	"BCKDK_sequences_filtered_longestORFs_mafft_mincov_prank"	"BCKDK_all"	569	23	"0.059177238490"	"0.052"	"N"	"0.4081"	0	"na"	"N"	"0.9999997549239497"	0	"na"	"Y"	"0.02137003412264926"	1	"27"	"N"	"1.0"	0	"na"	"N"	"0.8658877480590035"	0	"na"	"BCKDK_sequences_filtered_longestORFs_mafft_prank"	"BCKDK"	519	12	"0.048231141252"	"0.053"	"N"	0.0878	0	"na"	"N"	"0.9999996548177165"	0	"na"	"N"	"0.05497947292168534"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"38"	"BCS1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"BCS1L_sequences_filtered_longestORFs_mafft_prank"	"BCS1L"	453	12	"0.132205945080"	"0.132"	"N"	1	0	"na"	"N"	"0.9999978924487931"	0	"na"	"N"	"0.18713935974057247"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.988071712862211"	0	"na"	""	""	"onlybats"
"39"	"BCS1L"	"BCS1L_sequences_filtered_longestORFs_mafft_mincov_prank"	"BCS1L_all"	774	24	"0.092276958623"	"0.094"	"Y"	"0.0308"	5	"396, 705, 717, 741, 749"	"N"	"0.17084385208538738"	0	"na"	"Y"	"2.2634385460968778e-05"	3	"650, 738, 741"	"Y"	"0.0039580650376051145"	2	"738, 741"	"Y"	"0.0003752192635744316"	3	"650, 738, 741"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"40"	"BRD2"	"BRD2_sequences_filtered_longestORFs_mafft_mincov_prank"	"BRD2_all"	1016	24	"0.193797256005"	"0.204"	"N"	"0.9847"	5	"251, 282, 387, 583, 890"	"N"	"0.9999999632582337"	0	"na"	"N"	"0.960398562611789"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5288766765053515"	0	"na"	"BRD2_sequences_filtered_longestORFs_mafft_prank"	"BRD2"	804	11	"0.047991384820"	"0.046"	"N"	1	0	"na"	"N"	"0.9999986952888646"	0	"na"	"Y"	"0.005426137080708187"	3	"597, 632, 767"	"N"	"nan"	0	"na"	"N"	"0.2993924573097573"	0	"na"	""	""	"shared"
"41"	"BRD4"	"BRD4_sequences_filtered_longestORFs_mafft_mincov_prank"	"BRD4_all"	3149	24	"0.071135736852"	"0.048"	"Y"	"0.0000"	1	"1320"	"Y"	"9.427433477380182e-17"	1	"1320"	"Y"	"9.531062018384712e-15"	2	"758, 1320"	"N"	"0.8958341352960069"	0	"na"	"Y"	"2.651786420363759e-38"	1	"1320"	"BRD4_sequences_filtered_longestORFs_mafft_prank"	"BRD4"	1700	11	"0.060100406648"	"0.058"	"Y"	0	4	"565, 906, 907, 1246"	"N"	"0.999998199715066"	0	"na"	"Y"	"0.032744254083124216"	0	""	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"42"	"BZW2"	"BZW2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"BZW2_all_part2"	634	24	"0.010116694525"	"0.052"	"Y"	"0.0000"	2	"390, 396"	"N"	"0.9999999998335625"	0	"na"	"N"	"0.9999800102652258"	0	"na"	"Y"	"8.438891236882323e-10"	3	"6, 22, 81"	"Y"	"4.994993061121576e-11"	3	"6, 22, 81"	"BZW2_sequences_filtered_longestORFs_mafft_prank_part2_prank"	"BZW2_part2"	468	11	"0.025196976652"	"0.026"	"N"	1	0	"na"	"N"	"0.9999999890487744"	0	"na"	"N"	"0.9999999748170015"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"43"	"C1H1ORF50"	"C1orf50_sequences_filtered_longestORFs_mafft_mincov_prank"	"C1orf50_all"	304	21	"0.414567798996"	"0.416"	"N"	"0.4791"	3	"99, 275, 280"	"N"	"0.9748432112033502"	0	"na"	"N"	"0.5572375966694556"	0	"na"	"N"	"0.722527353641875"	0	"na"	"N"	"0.595710778900304"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"44"	"CCDC86"	"CCDC86_sequences_filtered_longestORFs_mafft_mincov_prank"	"CCDC86_all"	409	23	"0.490439505516"	"0.397"	"N"	"1.0000"	9	"24, 56, 70, 133, 159, 164, 189, 242, 404"	"N"	"0.999999920300073"	0	"na"	"N"	"0.943786792563708"	0	"na"	"N"	"0.99900049983408"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"CCDC86_sequences_filtered_longestORFs_mafft_prank"	"CCDC86"	426	10	"0.479979345119"	"0.370"	"N"	0.9932	9	"27, 41, 49, 67, 123, 191, 213, 217, 244"	"N"	"0.9999994642868457"	0	"na"	"N"	"0.972082322722496"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9436499474368054"	0	"na"	"Not clear to me why not detected under PS.
Aln is good. Lots of PS typical marks.
"	""	"shared"
"45"	"CDK5RAP2"	"CDK5RAP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"CDK5RAP2_all"	2658	25	"0.523933602623"	"0.548"	"Y"	"0.0037"	0	"na"	"Y"	"0.00021168144979182054"	1	"523"	"Y"	"1.1231640807620076e-06"	4	"523, 611, 1227, 1252"	"Y"	"4.446072472096559e-12"	2	"523, 611"	"Y"	"4.2180017118599783e-16"	9	"523, 611, 1149, 1182, 1227, 1252, 1291, 2179, 2452"	"CDK5RAP2_sequences_filtered_longestORFs_mafft_prank"	"CDK5RAP2"	2180	12	"0.441350523278"	"0.446"	"N"	0.7361	33	"132, 133, 312, 316, 317, 350, 454, 669, 802, 843, 859, 868, 1016, 1029, 1071, 1118, 1196, 1197, 1220, 1223, 1226, 1281, 1320, 1326, 1352, 1353, 1480, 1491, 1537, 1852, 1881, 1969, 2097"	"N"	"0.05666528271531974"	0	"na"	"Y"	"0.0014684527873602153"	0	""	"Y"	"0.0004989523289218173"	0	""	"Y"	"5.228349530650632e-07"	3	"692, 998, 1842"	""	""	"shared"
"46"	"CENPF"	"CENPF_sequences_filtered_longestORFs_mafft_mincov_prank"	"CENPF_all"	3358	23	"0.454025419172"	"0.442"	"N"	"0.5951"	69	"37, 77, 290, 297, 306, 314, 316, 448, 459, 582, 769, 855, 878, 881, 900, 942, 987, 1001, 1107, 1174, 1200, 1209, 1217, 1232, 1242, 1252, 1261, 1303, 1404, 1447, 1465, 1499, 1604, 1714, 1730, 1736, 1845, 1849, 1874, 1901, 1910, 1911, 1929, 1941, 2050, 2067, 2113, 2158, 2199, 2323, 2410, 2412, 2418, 2461, 2480, 2562, 2596, 2629, 2700, 2722, 2761, 2967, 3033, 3050, 3053, 3277, 3283, 3305, 3312"	"N"	"0.999992835412031"	0	"na"	"N"	"0.10001252251812066"	0	"na"	"Y"	"2.72352082703828e-05"	0	""	"Y"	"2.3803935637834017e-09"	0	""	"CENPF_sequences_filtered_longestORFs_mafft_prank"	"CENPF"	3255	10	"0.395606612250"	"0.392"	"N"	0.2913	56	"303, 389, 453, 459, 460, 463, 770, 772, 893, 993, 1031, 1079, 1094, 1201, 1216, 1241, 1266, 1287, 1311, 1522, 1538, 1539, 1541, 1599, 1666, 1694, 1698, 1707, 1709, 1715, 1766, 1810, 1833, 1850, 1857, 1895, 1896, 1998, 2076, 2238, 2320, 2371, 2449, 2545, 2622, 2643, 2650, 2793, 2865, 2947, 2991, 3010, 3024, 3122, 3213, 3221"	"N"	"0.9999964200315351"	0	"na"	"N"	"0.9936380594557517"	0	"na"	"N"	"0.42485812046202354"	0	"na"	"Y"	"0.0007087554594669269"	0	""	""	""	"shared"
"47"	"CEP112"	"CEP112_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP112_all"	1897	22	"0.276849866887"	"0.271"	"N"	"0.2236"	12	"192, 196, 568, 940, 943, 955, 958, 996, 1041, 1637, 1668, 1754"	"N"	"0.44609727324197324"	0	"na"	"N"	"0.05404672612720744"	0	"na"	"Y"	"0.017970926883913562"	0	""	"na"	"na"	0	"na"	"CEP112_sequences_filtered_longestORFs_mafft_prank"	"CEP112"	1043	11	"0.206157363089"	"0.194"	"N"	0.304	17	"82, 140, 172, 182, 254, 322, 364, 524, 528, 550, 578, 586, 637, 659, 701, 732, 859"	"N"	"0.9999999105748469"	0	"na"	"N"	"0.8886782377978476"	0	"na"	"N"	"0.6466177259356372"	0	"na"	"Y"	"0.003413558443400645"	0	""	""	""	"shared"
"48"	"CEP135"	"CEP135_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP135_all"	1226	24	"0.270918243847"	"0.216"	"N"	"0.6143"	19	"165, 275, 371, 399, 420, 434, 642, 744, 820, 823, 840, 842, 848, 857, 915, 1022, 1172, 1218, 1226"	"Y"	"0.01228451555764139"	1	"1226"	"Y"	"0.0011272195226491707"	1	"1226"	"Y"	"0.01240072922045062"	0	""	"Y"	"0.0014648535608086791"	1	"1226"	"CEP135_sequences_filtered_longestORFs_mafft_prank"	"CEP135"	1223	12	"0.210992798259"	"0.167"	"N"	1	3	"182, 731, 850"	"N"	"0.999998115596056"	0	"na"	"N"	"0.9839880186171744"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5621424451973213"	0	"na"	""	""	"shared"
"49"	"CEP135[0-3264]"	"CEP135_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to3264"	"CEP135_all[0-3264]"	1088	24	"0.288841074303"	"0.232"	"N"	"1.0000"	12	"275, 371, 399, 420, 434, 642, 820, 842, 848, 857, 915, 1022"	"N"	"0.41797614597927946"	0	"na"	"N"	"0.06411254227620235"	0	"na"	"N"	"0.3305491224578773"	0	"na"	"Y"	"0.006908518939452016"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"50"	"CEP135[3263-3678]"	"CEP135_sequences_filtered_longestORFs_mafft_mincov_prank_frag3263to3678"	"CEP135_all[3263-3678]"	138	24	"0.163079821087"	"0.182"	"N"	"1.0000"	3	"84, 130, 135"	"N"	"0.5393404624297595"	0	"na"	"N"	"0.059984435797166974"	0	"na"	"N"	"0.43561345498714343"	0	"na"	"N"	"0.1422740715865071"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"51"	"CEP250"	"CEP250_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP250_all"	4313	24	"0.355610453794"	"0.325"	"N"	"0.5565"	48	"20, 444, 523, 525, 1113, 1116, 1121, 1134, 1193, 1205, 1229, 1261, 1279, 1898, 1904, 2047, 2119, 2164, 2247, 2258, 2442, 2479, 2521, 2567, 2646, 2668, 2693, 2744, 2923, 2939, 2946, 3098, 3105, 3116, 3121, 3263, 3311, 3325, 3367, 3387, 3425, 3434, 3955, 3966, 3988, 4057, 4070, 4158"	"Y"	"0.01445230788699479"	0	""	"Y"	"6.396420329554522e-05"	1	"2247"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"CEP250_sequences_filtered_longestORFs_mafft_prank"	"CEP250"	2614	12	"0.265774763928"	"0.233"	"N"	0.9595	20	"167, 258, 327, 1085, 1115, 1411, 1426, 1684, 1754, 1936, 1958, 1977, 1982, 2198, 2268, 2331, 2347, 2459, 2490, 2520"	"N"	"0.9999971999971513"	0	"na"	"Y"	"4.593349950684148e-05"	1	"258"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	""	""	"shared"
"52"	"CEP350"	"CEP350_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP350_all"	4005	24	"0.303284884646"	"0.290"	"N"	"0.8648"	37	"443, 461, 516, 524, 528, 555, 567, 586, 648, 795, 806, 1151, 1475, 1491, 1493, 1565, 1595, 1636, 1658, 1674, 1990, 2782, 2892, 3034, 3051, 3071, 3073, 3152, 3237, 3350, 3421, 3460, 3509, 3530, 3594, 3804, 3995"	"N"	"0.9999980207959684"	0	"na"	"Y"	"0.04735914816863298"	0	""	"N"	"0.9910403787746719"	0	"na"	"Y"	"0.02583564891214684"	0	""	"CEP350_sequences_filtered_longestORFs_mafft_prank"	"CEP350"	3352	12	"0.250105005404"	"0.222"	"N"	0.9047	34	"37, 178, 188, 266, 303, 488, 515, 544, 563, 1091, 1104, 1237, 1446, 1465, 1499, 1673, 2340, 2475, 2476, 2546, 2581, 2587, 2635, 2645, 2660, 2679, 2724, 2796, 2834, 2835, 2845, 2853, 2949, 3209"	"N"	"0.9999999911087798"	0	"na"	"N"	"0.0715503354809176"	0	"na"	"N"	"0.6804506362032015"	0	"na"	"N"	"0.05228739240356714"	0	"na"	""	""	"shared"
"53"	"CEP43"	"CEP43_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP43_all"	996	22	"0.217127307406"	"0.200"	"N"	"0.2754"	6	"513, 576, 584, 607, 648, 675"	"N"	"0.89657698694594"	0	"na"	"N"	"0.12289542444020864"	0	"na"	"N"	"0.8411376148448129"	0	"na"	"Y"	"0.002350799020247638"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"54"	"CEP68"	"CEP68_sequences_filtered_longestORFs_mafft_mincov_prank"	"CEP68_all"	1164	24	"0.569514697739"	"0.589"	"Y"	"0.0462"	29	"35, 60, 132, 134, 143, 148, 202, 207, 249, 279, 294, 396, 429, 450, 462, 465, 476, 493, 512, 513, 585, 586, 600, 651, 659, 757, 960, 980, 985"	"Y"	"0.0007482232324301053"	0	""	"Y"	"4.7907226839875226e-05"	2	"60, 465"	"Y"	"6.013010059238225e-05"	1	"465"	"Y"	"5.66615387113456e-06"	5	"60, 132, 249, 465, 980"	"CEP68_sequences_filtered_longestORFs_mafft_prank"	"CEP68"	874	12	"0.434041323712"	"0.424"	"N"	0.9735	11	"83, 123, 155, 427, 439, 449, 462, 478, 588, 675, 686"	"N"	"0.49214635232430914"	0	"na"	"N"	"0.08503102873795458"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.048850043989108353"	0	""	""	""	"shared"
"55"	"CHMP2A"	"CHMP2A_sequences_filtered_longestORFs_mafft_mincov_prank"	"CHMP2A_all"	784	24	"0.134317039832"	"0.113"	"N"	"0.0739"	2	"614, 643"	"N"	"0.9999997898121585"	0	"na"	"N"	"0.9726719257023788"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.0026959624879334"	0	""	"CHMP2A_sequences_filtered_longestORFs_mafft_prank"	"CHMP2A"	261	12	"0.009560764201"	"0.009"	"N"	0.573	1	"261"	"N"	"0.9999999922001734"	0	"na"	"Y"	"7.99952553215434e-05"	3	"182, 220, 221"	"N"	"1.0"	0	"na"	"Y"	"0.007828377549224703"	0	""	""	""	"shared"
"56"	"CHPF"	"CHPF_sequences_filtered_longestORFs_mafft_mincov_prank"	"CHPF_all"	790	24	"0.048013757058"	"0.048"	"N"	"1.0000"	1	"370"	"N"	"0.9999996829984005"	0	"na"	"Y"	"0.0004093545908648424"	3	"370, 373, 767"	"N"	"0.9970044955036704"	0	"na"	"Y"	"0.03080741103276452"	1	"373"	"CHPF_sequences_filtered_longestORFs_mafft_prank"	"CHPF"	834	12	"0.068644237063"	"0.068"	"N"	0.0561	2	"339, 649"	"N"	"0.9999994309620688"	0	"na"	"N"	"0.2000407448063027"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"57"	"CHPF2"	"CHPF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"CHPF2_all"	824	22	"0.091580003619"	"0.083"	"N"	"0.9114"	1	"683"	"N"	"0.9999999813981051"	0	"na"	"Y"	"0.015369463566035994"	5	"82, 319, 380, 526, 683"	"N"	"0.9930244429336252"	0	"na"	"N"	"0.3723205880533881"	0	"na"	"CHPF2_sequences_filtered_longestORFs_mafft_prank"	"CHPF2"	795	12	"0.033912593302"	"0.038"	"N"	0.9975	1	"504"	"N"	"0.9999999998071871"	0	"na"	"Y"	"0.0013738401598242546"	2	"67, 510"	"N"	"1.0"	0	"na"	"N"	"0.9743350896089052"	0	"na"	""	""	"shared"
"58"	"CISD3"	"CISD3_sequences_filtered_longestORFs_mafft_mincov_prank"	"CISD3_all"	755	22	"0.246814179431"	"0.269"	"Y"	"0.0000"	2	"240, 304"	"N"	"0.99999994431778"	0	"na"	"N"	"0.7283308007321679"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7780223715587988"	0	"na"	"CISD3_sequences_filtered_longestORFs_mafft_prank"	"CISD3"	338	9	"0.291778267628"	"0.261"	"Y"	0.0357	1	"229"	"Y"	"0.010300146355136456"	1	"188"	"Y"	"0.0006314778513951671"	4	"188, 200, 229, 303"	"N"	"0.05619092567371273"	0	"na"	"Y"	"0.011254356284444886"	2	"188, 303"	""	""	"shared"
"59"	"CIT"	"CIT_sequences_filtered_longestORFs_mafft_mincov_prank"	"CIT_all"	2945	24	"0.037646555111"	"0.036"	"N"	"1.0000"	5	"270, 374, 457, 586, 2759"	"N"	"0.9999999319788936"	0	"na"	"Y"	"3.303048206279468e-12"	7	"218, 270, 372, 374, 423, 764, 2638"	"N"	"0.9980019986669264"	0	"na"	"Y"	"0.0014031999106819035"	1	"374"	"CIT_sequences_filtered_longestORFs_mafft_prank"	"CIT"	2350	11	"0.049451453316"	"0.047"	"N"	1	2	"186, 2101"	"N"	"0.9999992900523258"	0	"na"	"Y"	"3.4137129040957628e-09"	7	"40, 48, 78, 84, 186, 399, 2331"	"N"	"1.0"	0	"na"	"N"	"0.33021873855483563"	0	"na"	""	""	"shared"
"60"	"CLCC1"	"CLCC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"CLCC1_all"	1003	23	"0.387140057280"	"0.358"	"N"	"1.0000"	0	"na"	"N"	"0.9969528688945792"	0	"na"	"N"	"0.1975430987785456"	0	"na"	"N"	"0.3017972031261467"	0	"na"	"Y"	"0.039281563198178604"	0	""	"CLCC1_sequences_filtered_longestORFs_mafft_prank"	"CLCC1"	878	12	"0.389987775037"	"0.369"	"N"	0.061	20	"304, 314, 415, 469, 513, 553, 568, 580, 616, 641, 681, 683, 697, 707, 717, 737, 742, 765, 792, 794"	"N"	"0.9999986477751056"	0	"na"	"N"	"0.7941510288300495"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.696978998466325"	0	"na"	""	""	"shared"
"61"	"CLIP4"	"CLIP4_sequences_filtered_longestORFs_mafft_mincov_prank"	"CLIP4_all"	1304	24	"0.117031084297"	"0.103"	"Y"	"0.0025"	7	"113, 298, 347, 379, 446, 501, 827"	"N"	"0.9999989817802725"	0	"na"	"Y"	"0.028418180164528135"	1	"386"	"Y"	"0.004927123153974509"	0	""	"Y"	"0.040477864898334465"	0	""	"CLIP4_sequences_filtered_longestORFs_mafft_prank"	"CLIP4"	806	12	"0.124211676557"	"0.124"	"Y"	0	6	"443, 470, 645, 646, 665, 683"	"N"	"0.9999993504600133"	0	"na"	"Y"	"0.0161088496734443"	4	"222, 359, 541, 661"	"N"	"0.9930244429327221"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"62"	"CNTRL"	"CNTRL_sequences_filtered_longestORFs_mafft_mincov_prank"	"CNTRL_all"	5380	24	"0.358903199166"	"0.357"	"Y"	"0.0000"	44	"106, 113, 138, 161, 175, 236, 266, 280, 330, 344, 345, 517, 523, 527, 618, 647, 751, 893, 918, 922, 949, 1090, 1154, 1200, 1292, 1339, 1402, 1435, 1460, 1537, 1566, 1643, 2629, 3606, 3616, 3749, 4431, 4451, 4497, 4577, 4784, 5312, 5314, 5321"	"Y"	"0.002142941149050039"	1	"527"	"Y"	"0.00016584455688879604"	1	"527"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"CNTRL_sequences_filtered_longestORFs_mafft_prank"	"CNTRL"	2478	12	"0.288172821262"	"0.301"	"N"	0.9992	18	"241, 274, 306, 416, 1064, 1329, 1335, 1439, 1441, 1907, 1991, 2000, 2055, 2067, 2081, 2146, 2426, 2429"	"N"	"0.9999975140121001"	0	"na"	"N"	"0.3576515461196588"	0	"na"	"N"	"0.2996919995138132"	0	"na"	"Y"	"0.036406789391123975"	0	""	""	""	"shared"
"63"	"COL6A1"	"COL6A1_sequences_filtered_longestORFs_mafft_mincov_prank"	"COL6A1_all"	1482	22	"0.084215349534"	"0.056"	"N"	"0.1077"	16	"154, 269, 376, 406, 657, 723, 789, 894, 1022, 1025, 1123, 1124, 1183, 1215, 1244, 1348"	"N"	"0.9999994799910825"	0	"na"	"Y"	"1.951983742015941e-06"	8	"156, 177, 255, 266, 767, 925, 1208, 1281"	"N"	"1.0"	0	"na"	"Y"	"0.0011238443676984354"	0	""	"COL6A1_bat_cut_hipArm_mafft_prank"	"COL6A1"	1078	9	"0.0828000843295001"	"0.077"	"Y"	0.0023	46	"15, 26, 99, 115, 180, 184, 202, 221, 226, 227, 283, 306, 337, 375, 387, 390, 399, 472, 603, 632, 678, 685, 725, 726, 738, 740, 761, 768, 770, 808, 834, 856, 895, 902, 911, 916, 919, 920, 956, 958, 967, 985, 996, 1009, 1060, 1078"	"N"	"0.999999659492518"	0	"na"	"Y"	"1.4694972038785e-06"	8	"64, 108, 227, 364, 387, 472, 727, 986"	"N"	"0.13931746906383644"	0	"na"	"Y"	"0.017650344100739557"	1	"472"	""	""	"shared"
"64"	"COLGALT1"	"COLGALT1_sequences_filtered_longestORFs_D262gp2_prank"	"COLGALT1_262-2"	670	22	"0.064528425433"	"0.044"	"Y"	"0.0020"	4	"22, 102, 147, 243"	"N"	"0.9999997906106947"	0	"na"	"N"	"0.1087993010801923"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.1056102339500828"	0	"na"	"COLGALT1_sequences_filtered_longestORFs_D118gp2_prank"	"COLGALT1_118-2"	1047	11	"0.050042692102"	"0.048"	"N"	0.2522	3	"185, 433, 577"	"N"	"0.9999992417409121"	0	"na"	"Y"	"0.009699158343525069"	1	"433"	"N"	"1.0"	0	"na"	"Y"	"0.0348047989794767"	1	"433"	""	""	"shared"
"65"	"COMT"	"COMT_sequences_filtered_longestORFs_mafft_mincov_prank"	"COMT_all"	1143	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"COMT_sequences_filtered_longestORFs_mafft_prank"	"COMT"	278	10	"0.262458910316"	"0.204"	"N"	0.2706	12	"17, 19, 30, 38, 56, 80, 84, 101, 105, 157, 177, 254"	"N"	"0.348130857960201"	0	"na"	"Y"	"0.009534298992273106"	6	"38, 39, 41, 44, 230, 260"	"N"	"0.05807616153052819"	0	"na"	"Y"	"0.0002404496129336441"	0	""	""	""	"shared"
"66"	"COQ8A"	"COQ8B_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"COQ8B_all_part2"	648	8	"0.093726294400"	"0.077"	"N"	"1.0000"	6	"67, 95, 108, 148, 250, 361"	"N"	"0.9963340394557686"	0	"na"	"Y"	"0.0014408576324124317"	4	"67, 108, 135, 641"	"N"	"1.0"	0	"na"	"N"	"0.09320070434218254"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"67"	"COQ8B"	"COQ8B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"COQ8B_all_part1"	1585	24	"0.193911276721"	"0.162"	"N"	"0.9848"	8	"843, 962, 967, 1060, 1315, 1454, 1566, 1580"	"N"	"0.9999993627090801"	0	"na"	"N"	"0.3524974012052818"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.18749558134692915"	0	"na"	"COQ8B_bat_select-2_mafft_prank"	"COQ8B"	549	11	"0.182497195488553"	"0.152"	"N"	0.8349	3	"20, 56, 542"	"N"	"0.999999084497595"	0	"na"	"N"	"0.254394310720918"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.041794104084912305"	0	""	""	""	"shared"
"68"	"CRTC3"	"CRTC3_sequences_filtered_longestORFs_mafft_mincov_prank"	"CRTC3_all"	1009	23	"0.136194814144"	"0.157"	"Y"	"0.0214"	12	"45, 46, 47, 177, 281, 694, 717, 785, 797, 835, 868, 897"	"N"	"0.14908779103504977"	0	"na"	"Y"	"0.0016285455675104437"	2	"45, 47"	"N"	"0.8529963589694294"	0	"na"	"N"	"0.18562996914102153"	0	"na"	"CRTC3_sequences_filtered_longestORFs_mafft_prank"	"CRTC3"	851	12	"0.171790887080"	"0.173"	"N"	0.644	4	"487, 516, 639, 668"	"N"	"0.9999996535689806"	0	"na"	"N"	"0.2901238301948251"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.00039092297979666685"	0	""	""	""	"shared"
"69"	"CSDE1"	"CSDE1_sequences_filtered_longestORFs_mafft_mincov_prank"	"CSDE1_all"	1421	24	"0.113593693126"	"0.122"	"Y"	"0.0000"	2	"172, 173"	"N"	"0.9999995787275998"	0	"na"	"N"	"0.9984935954836791"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7254232509902045"	0	"na"	"CSDE1_sequences_filtered_longestORFs_mafft_prank"	"CSDE1"	1159	12	"0.081507673532"	"0.100"	"N"	1	1	"749"	"N"	"0.9999975757384445"	0	"na"	"N"	"0.9996612418895992"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"70"	"CSNK2A1"	"CSNK2A2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"CSNK2A2_all_part1"	483	23	"0.084921178384"	"0.081"	"N"	"0.9421"	0	"na"	"N"	"0.9999996352140198"	0	"na"	"N"	"0.9504786168807111"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6331803400628359"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"71"	"CSNK2A2"	"CSNK2A2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"CSNK2A2_all_part2"	571	24	"0.035420376077"	"0.034"	"N"	"1.0000"	0	"na"	"N"	"0.9999939666734114"	0	"na"	"N"	"0.4276588948283805"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7834876342627513"	0	"na"	"CSNK2A2_sequences_filtered_longestORFs_D138gp1_prank"	"CSNK2A2_138-1"	477	12	"0.004084415411"	"0.010"	"N"	0.7806	1	"121"	"N"	"0.9999999842543731"	0	"na"	"N"	"0.9999996824056374"	0	"na"	"N"	"0.326606237611907"	0	"na"	"N"	"0.3091279531286871"	0	"na"	""	""	"shared"
"72"	"CSNK2B"	"CSNK2B_sequences_filtered_longestORFs_mafft_mincov_prank"	"CSNK2B_all"	856	23	"0.237889117100"	"0.251"	"Y"	"0.0017"	9	"138, 139, 143, 148, 178, 189, 318, 411, 630"	"N"	"0.9999992911891934"	0	"na"	"N"	"0.999874632721648"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.33722665767603527"	0	"na"	"CSNK2B_sequences_filtered_longestORFs_mafft_prank"	"CSNK2B"	215	12	"0.008287837199"	"0.008"	"N"	0.3807	1	"156"	"N"	"0.9999997733666789"	0	"na"	"N"	"0.11432013524455374"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5299354883175731"	0	"na"	""	""	"shared"
"73"	"CSNK2B[0-609]"	"CSNK2B_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to609"	"CSNK2B_all[0-609]"	203	23	"0.172238057858"	"0.168"	"N"	"0.9134"	1	"178"	"N"	"0.9999994285643011"	0	"na"	"N"	"0.9989990929788742"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9811793622428007"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"74"	"CSNK2B[608-2568]"	"CSNK2B_sequences_filtered_longestORFs_mafft_mincov_prank_frag608to2568"	"CSNK2B_all[608-2568]"	653	23	"0.257497602088"	"0.254"	"N"	"0.4976"	1	"427"	"N"	"0.9999981315753932"	0	"na"	"N"	"0.9999246403717831"	0	"na"	"N"	"0.698374351351627"	0	"na"	"N"	"0.22268434579100438"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"75"	"CUL2"	"CUL2_sequences_filtered_longestORFs_mafft_mincov_prank"	"CUL2_all"	1261	23	"0.039776471005"	"0.041"	"N"	"1.0000"	1	"623"	"N"	"0.999999793381015"	0	"na"	"N"	"0.5432168616840068"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7505117288368713"	0	"na"	"CUL2_sequences_filtered_longestORFs_mafft_prank"	"CUL2"	938	12	"0.141297909367"	"0.141"	"Y"	0	5	"20, 312, 593, 596, 731"	"N"	"0.7603218916019506"	0	"na"	"N"	"0.2598620587061319"	0	"na"	"N"	"0.18159070464507368"	0	"na"	"Y"	"0.0365161737537258"	0	""	""	""	"shared"
"76"	"CUNH1ORF50"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"C1orf50_sequences_filtered_longestORFs_mafft_prank"	"C1orf50"	269	11	"0.341758022438"	"0.368"	"N"	0.9984	2	"88, 236"	"N"	"0.9999982300625763"	0	"na"	"N"	"0.9561748044879124"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"onlybats"
"77"	"CWC27"	"CWC27_sequences_filtered_longestORFs_mafft_mincov_prank"	"CWC27_all"	1544	24	"0.206760740444"	"0.148"	"Y"	"0.0000"	2	"342, 358"	"N"	"0.9999970780524506"	0	"na"	"N"	"0.7563770914404656"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"3.8561942208303546e-08"	0	""	"CWC27_sequences_filtered_longestORFs_mafft_prank"	"CWC27"	683	12	"0.209726861041"	"0.168"	"Y"	0	5	"6, 198, 202, 462, 505"	"N"	"0.895550115475682"	0	"na"	"N"	"0.11908864171121111"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.4033300780669753"	0	"na"	""	""	"shared"
"78"	"CYB5B"	"CYB5B_sequences_filtered_longestORFs_mafft_mincov_prank"	"CYB5B_all"	781	24	"0.159080696060"	"0.226"	"N"	"1.0000"	2	"550, 584"	"N"	"0.9999998873261183"	0	"na"	"N"	"0.55325096211161"	0	"na"	"N"	"0.9521811296985256"	0	"na"	"N"	"0.1308112283486016"	0	"na"	"CYB5B_bat_select-2_mafft_prank"	"CYB5B"	278	12	"0.260498620632551"	"0.265"	"Y"	0	4	"34, 116, 117, 179"	"N"	"0.99999976905522"	0	"na"	"N"	"0.998788983193515"	0	"na"	"N"	"0.9831436846348578"	0	"na"	"N"	"0.6187833918061296"	0	"na"	""	""	"shared"
"79"	"CYB5BR3"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"CYB5R3_sequences_filtered_longestORFs_D144gp1_prank"	"CYB5R3_144-1"	415	9	"0.054123157555"	"0.062"	"N"	0.7597	3	"211, 277, 377"	"N"	"0.9999999920273694"	0	"na"	"Y"	"0.04377588086421398"	1	"75"	"N"	"1.0"	0	"na"	"N"	"0.3787041445438206"	0	"na"	"Dupl well detected, impossible to know which one is which"	""	"onlybats"
"80"	"CYB5R1"	"CYB5R3_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"CYB5R3_all_part2"	514	24	"0.176833499640"	"0.172"	"N"	"0.7012"	1	"10"	"Y"	"0.00045410566731747174"	1	"306"	"Y"	"5.707181863141933e-06"	1	"306"	"Y"	"4.748959136946156e-05"	1	"306"	"Y"	"1.1875893129098072e-05"	1	"306"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"81"	"CYB5R3"	"CYB5R3_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"CYB5R3_all_part1"	840	24	"0.068506739915"	"0.063"	"N"	"0.4163"	3	"71, 218, 355"	"N"	"0.9999995824569813"	0	"na"	"N"	"0.999926572504325"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"82"	"DCAF7"	"DCAF7_sequences_filtered_longestORFs_mafft_mincov_prank"	"DCAF7_all"	419	22	"0.016008388641"	"0.015"	"Y"	"0.0355"	0	"na"	"N"	"0.99999989632534"	0	"na"	"N"	"0.4003587295913235"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8065414401772095"	0	"na"	"DCAF7_sequences_filtered_longestORFs_mafft_prank"	"DCAF7"	342	12	"0.001000000000"	"0.000"	"N"	1	0	"na"	"N"	"0.9999999999990905"	0	"na"	"N"	"0.9999336115303021"	0	"na"	"N"	"0.997004495503217"	0	"na"	"N"	"0.9980019986673803"	0	"na"	""	""	"shared"
"83"	"DCAKD"	"DCAKD_sequences_filtered_longestORFs_mafft_mincov_prank"	"DCAKD_all"	492	24	"0.079209485979"	"0.072"	"N"	"1.0000"	1	"261"	"N"	"0.9999997815157496"	0	"na"	"N"	"0.9999999682427193"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998336257"	0	"na"	"DCAKD_sequences_filtered_longestORFs_mafft_prank"	"DCAKD"	231	12	"0.028667437882"	"0.033"	"N"	0.9911	4	"18, 43, 184, 220"	"N"	"0.9968479269499217"	0	"na"	"N"	"0.991360020023065"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"shared"
"84"	"DCTPP1"	"DCTPP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"DCTPP1_all"	183	24	"0.346244286573"	"0.339"	"N"	"1.0000"	3	"26, 103, 169"	"N"	"0.9808463497524612"	0	"na"	"N"	"0.5723036326699686"	0	"na"	"N"	"0.8684893116976016"	0	"na"	"N"	"0.35915544132944505"	0	"na"	"DCTPP1_sequences_filtered_longestORFs_mafft_prank"	"DCTPP1"	223	11	"0.339909966211"	"0.352"	"N"	0.165	2	"29, 203"	"N"	"0.6382508675013827"	0	"na"	"N"	"0.1151718582244259"	0	"na"	"N"	"0.15381572253341838"	0	"na"	"N"	"0.07043957703401349"	0	"na"	""	""	"shared"
"85"	"DDX10"	"DDX10_sequences_filtered_longestORFs_mafft_mincov_prank"	"DDX10_all"	1253	23	"0.229039735865"	"0.207"	"N"	"0.1465"	10	"484, 727, 843, 936, 947, 1014, 1021, 1184, 1195, 1234"	"N"	"0.9999981429081308"	0	"na"	"N"	"0.9995854832899672"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9093729344671728"	0	"na"	"DDX10_sequences_filtered_longestORFs_mafft_prank"	"DDX10"	1096	12	"0.210209519346"	"0.203"	"N"	0.3441	7	"62, 352, 553, 646, 739, 935, 964"	"N"	"0.762189614507708"	0	"na"	"Y"	"0.001957649235397384"	28	"15, 20, 149, 532, 577, 579, 582, 585, 602, 615, 620, 624, 626, 627, 629, 630, 631, 639, 659, 705, 809, 885, 932, 943, 948, 949, 955, 964"	"N"	"0.4970821374703773"	0	"na"	"Y"	"0.0289264175304699"	0	""	"Some interesting things in this gene"	""	"shared"
"86"	"DDX21"	"DDX21_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"DDX21_all_part1"	846	24	"0.279597626583"	"0.269"	"N"	"0.0691"	17	"10, 31, 44, 58, 84, 96, 109, 170, 201, 242, 550, 705, 782, 796, 806, 821, 832"	"N"	"0.9212801509748152"	0	"na"	"N"	"0.12119261747665333"	0	"na"	"N"	"0.17552040061703517"	0	"na"	"Y"	"0.0026718076851989644"	0	""	"DDX21_bat_select_mafft_prank"	"DDX21"	875	12	"0.202913000963263"	"0.191"	"Y"	0.0096	5	"119, 163, 220, 852, 853"	"N"	"0.999998239780055"	0	"na"	"N"	"0.465970381815381"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5106861833664071"	0	"na"	""	""	"shared"
"87"	"DDX21[0-717]"	"DDX21_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag0to717"	"DDX21_all_part1[0-717]"	239	24	"0.489945988666"	"0.523"	"N"	"0.1876"	8	"10, 31, 44, 84, 96, 108, 109, 201"	"N"	"0.9322576482207099"	0	"na"	"N"	"0.5924011306363255"	0	"na"	"Y"	"0.04406894233835043"	0	""	"Y"	"0.008082936857715162"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"88"	"DDX21[716-2538]"	"DDX21_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag716to2538"	"DDX21_all_part1[716-2538]"	607	24	"0.186488097860"	"0.180"	"N"	"0.5233"	8	"3, 217, 311, 543, 557, 567, 582, 593"	"N"	"0.9999976709877793"	0	"na"	"N"	"0.6291169478493552"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.19128324333896832"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"89"	"DDX50"	"DDX21_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"DDX21_all_part2"	868	19	"0.070277410736"	"0.064"	"Y"	"0.0000"	4	"85, 107, 855, 856"	"N"	"0.9966723803276349"	0	"na"	"Y"	"0.002981026559614488"	4	"108, 116, 119, 856"	"N"	"0.9801986733063274"	0	"na"	"N"	"0.611402365832293"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"90"	"DNAJC11"	"DNAJC11_sequences_filtered_longestORFs_mafft_mincov_prank"	"DNAJC11_all"	744	24	"0.053610317516"	"0.053"	"N"	"0.9975"	3	"122, 132, 458"	"N"	"0.9635426191719061"	0	"na"	"N"	"0.05232358045366291"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.16235012670335852"	0	"na"	"DNAJC11_sequences_filtered_longestORFs_mafft_prank"	"DNAJC11"	706	12	"0.022970831251"	"0.023"	"Y"	0.0133	2	"180, 448"	"N"	"0.9999999999499778"	0	"na"	"N"	"0.9999999992951416"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9970044955027636"	0	"na"	""	""	"shared"
"91"	"DNAJC15"	"DNAJC19_sequences_filtered_longestORFs_D558gp1_prank"	"DNAJC19_558-1"	458	18	"0.423133527701"	"0.365"	"Y"	"0.0001"	5	"163, 186, 362, 388, 441"	"N"	"0.1865764865805312"	0	"na"	"N"	"0.061127197076420725"	0	"na"	"Y"	"0.00908618637071697"	1	"441"	"Y"	"0.00012012232012208033"	2	"186, 441"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"92"	"DNAJC19"	"DNAJC19_sequences_filtered_longestORFs_D418gp2_prank"	"DNAJC19_418-2"	165	17	"0.786428940683"	"0.430"	"N"	"1.0000"	0	"na"	"N"	"0.9999999790982204"	0	"na"	"N"	"0.9989453490637974"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"DNAJC19_sequences_filtered_longestORFs_D130gp2_prank"	"DNAJC19_130-2"	117	9	"0.464997686211"	"0.317"	"N"	0.7685	0	"na"	"N"	"0.9999884198150295"	0	"na"	"N"	"0.9954032035149585"	0	"na"	"N"	"0.9203511472201523"	0	"na"	"N"	"0.5660912469951922"	0	"na"	"Yes duplication, but groups are not awesome after. No signs of PS though"	""	"shared"
"93"	"DNMT1"	"DNMT1_sequences_filtered_longestORFs_mafft_mincov_prank"	"DNMT1_all"	2343	24	"0.081848247223"	"0.063"	"Y"	"0.0000"	7	"413, 429, 565, 579, 606, 745, 2169"	"Y"	"2.0669482035016898e-16"	2	"745, 2169"	"Y"	"2.0168311185278022e-28"	5	"429, 745, 917, 1814, 2169"	"Y"	"1.0454601661378748e-23"	3	"251, 745, 2169"	"Y"	"2.1202898262187422e-30"	5	"251, 579, 745, 2085, 2169"	"DNMT1_sequences_filtered_longestORFs_mafft_prank"	"DNMT1"	2112	12	"0.128285103645"	"0.124"	"Y"	0.0399	10	"20, 24, 285, 287, 428, 487, 603, 638, 661, 799"	"N"	"0.9999997325594807"	0	"na"	"N"	"0.0986664862875594"	0	"na"	"N"	"0.5401005246443784"	0	"na"	"N"	"0.1867470969880856"	0	"na"	"Yes duplication, 2 seq wrongly assigned to the other group"	""	"shared"
"94"	"DPH5"	"DPH5_sequences_filtered_longestORFs_mafft_mincov_prank"	"DPH5_all"	442	24	"0.152405412870"	"0.161"	"N"	"0.0644"	7	"210, 241, 244, 275, 343, 348, 369"	"Y"	"0.000553882037864914"	2	"241, 369"	"Y"	"9.638729171315118e-08"	2	"241, 369"	"Y"	"0.0003615898498301604"	2	"241, 369"	"Y"	"4.386407513280553e-06"	2	"241, 369"	"DPH5_sequences_filtered_longestORFs_mafft_prank"	"DPH5"	419	12	"0.091982892381"	"0.103"	"N"	1	0	"na"	"N"	"0.9999997475070223"	0	"na"	"N"	"0.9999931551872187"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"95"	"DPH5[0-702]"	"DPH5_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to702"	"DPH5_all[0-702]"	234	24	"0.083095837909"	"0.090"	"Y"	"0.0113"	0	"na"	"N"	"0.9999998598689315"	0	"na"	"N"	"0.9880463020289938"	0	"na"	"Y"	"0.0003623137531919464"	0	""	"Y"	"0.00026178159728189196"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"96"	"DPH5[701-1326]"	"DPH5_sequences_filtered_longestORFs_mafft_mincov_prank_frag701to1326"	"DPH5_all[701-1326]"	208	24	"0.179556512368"	"0.188"	"N"	"0.4922"	2	"109, 114"	"N"	"0.9999996325087288"	0	"na"	"N"	"0.997863823233271"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"97"	"DPY19L1"	"DPY19L1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"DPY19L1_all_part2"	914	20	"0.106997851070"	"0.095"	"N"	"1.0000"	0	"na"	"N"	"0.9999988437509592"	0	"na"	"N"	"0.2992555688487431"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6757041139607441"	0	"na"	"DPY19L1_sequences_filtered_longestORFs_D108gp2_prank"	"DPY19L1_108-2"	995	10	"0.047489877056"	"0.050"	"N"	0.9233	3	"167, 368, 839"	"N"	"0.9999996015831923"	0	"na"	"N"	"0.1499397686224669"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.18956941793172655"	0	"na"	""	""	"shared"
"98"	"DPY19L2"	"DPY19L1_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"DPY19L1_all_part1"	1753	17	"0.387413924480"	"0.447"	"Y"	"0.0000"	13	"409, 410, 459, 484, 487, 595, 598, 889, 895, 990, 1011, 1449, 1519"	"N"	"0.1473064506110387"	0	"na"	"Y"	"0.019211556263291192"	9	"598, 884, 996, 1428, 1523, 1541, 1595, 1625, 1704"	"Y"	"5.027513183662357e-05"	1	"378"	"Y"	"1.78695053972004e-06"	11	"378, 395, 409, 411, 431, 503, 598, 884, 1595, 1625, 1704"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"99"	"ECSIT"	"ECSIT_sequences_filtered_longestORFs_mafft_mincov_prank"	"ECSIT_all"	1436	23	"0.313480036259"	"0.265"	"N"	"0.8284"	14	"104, 119, 123, 136, 138, 153, 181, 215, 286, 326, 1058, 1123, 1153, 1174"	"N"	"0.9999953167999206"	0	"na"	"N"	"0.9999656179596921"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.06210057691441663"	0	"na"	"ECSIT_sequences_filtered_longestORFs_mafft_prank"	"ECSIT"	888	12	"0.233749083581"	"0.212"	"N"	0.586	5	"290, 357, 506, 518, 883"	"N"	"0.9999998547664396"	0	"na"	"N"	"0.999969610648547"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9417645335847283"	0	"na"	""	""	"shared"
"100"	"EDEM3"	"EDEM3_sequences_filtered_longestORFs_mafft_mincov_prank"	"EDEM3_all"	1395	24	"0.141168127030"	"0.134"	"N"	"0.5452"	4	"16, 19, 1181, 1237"	"Y"	"4.901883242434099e-38"	1	"1181"	"Y"	"7.828310541947127e-50"	1	"1181"	"Y"	"7.552046806868053e-39"	1	"1181"	"na"	"na"	0	"na"	"EDEM3_sequences_filtered_longestORFs_mafft_prank"	"EDEM3"	1209	12	"0.111257347006"	"0.104"	"Y"	0.0245	0	"na"	"Y"	"0.02585262744376434"	1	"1036"	"Y"	"1.206627269231966e-17"	25	"3, 13, 547, 1036, 1039, 1049, 1067, 1068, 1069, 1070, 1085, 1086, 1087, 1089, 1095, 1096, 1103, 1111, 1112, 1122, 1128, 1130, 1142, 1153, 1162"	"Y"	"0.025578579910267275"	0	""	"Y"	"5.726449189570869e-07"	4	"1036, 1068, 1086, 1111"	"Very conserved overall, except Cter, ok with profile of PS"	""	"shared"
"101"	"EIF4E2"	"EIF4E2_sequences_filtered_longestORFs_mafft_mincov_prank"	"EIF4E2_all"	807	24	"0.232675533751"	"0.241"	"Y"	"0.0000"	4	"110, 351, 536, 672"	"N"	"0.9999999927376848"	0	"na"	"N"	"0.5233031918651796"	0	"na"	"Y"	"4.675171455053596e-09"	3	"591, 592, 672"	"Y"	"2.042686466690582e-09"	4	"591, 592, 643, 672"	"EIF4E2_sequences_filtered_longestORFs_mafft_prank"	"EIF4E2"	932	12	"0.044097660017"	"0.050"	"N"	0.0821	2	"45, 122"	"N"	"0.9999999618357841"	0	"na"	"N"	"0.20034306135987306"	0	"na"	"N"	"0.08118701162226868"	0	"na"	"Y"	"0.01960442446912993"	0	""	"Yes correct to keep full aln and not the groups"	""	"shared"
"102"	"EIF4H"	"EIF4H_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"EIF4H_all_part1"	557	23	"0.119037210760"	"0.131"	"N"	"1.0000"	0	"na"	"N"	"0.9999999828753517"	0	"na"	"N"	"0.9999820282085377"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"EIF4H_sequences_filtered_longestORFs_mafft_prank"	"EIF4H"	448	12	"0.089860319627"	"0.101"	"N"	1	1	"4"	"N"	"0.9948734298686034"	0	"na"	"N"	"0.06094369359894792"	0	"na"	"N"	"0.3828928859750981"	0	"na"	"N"	"0.26263238507076825"	0	"na"	""	""	"shared"
"103"	"ELOB"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ELOB_bat_select_mafft_prank"	"ELOB"	124	7	"0.0223993973773562"	"0.023"	"Y"	0.0017	0	"na"	"N"	"0.999999863385606"	0	"na"	"N"	"0.889234611247919"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"onlybats"
"104"	"ELOC"	"ELOC_sequences_filtered_longestORFs_mafft_mincov_prank"	"ELOC_all"	750	24	"0.582849724940"	"0.530"	"N"	"0.1023"	2	"471, 591"	"N"	"0.575484626039688"	0	"na"	"N"	"0.3383121814863435"	0	"na"	"N"	"0.31317285139256007"	0	"na"	"N"	"0.09135520674742265"	0	"na"	"ELOC_sequences_filtered_longestORFs_mafft_prank"	"ELOC"	152	12	"0.123879980065"	"0.126"	"Y"	0	1	"40"	"N"	"0.11567652604194509"	0	"na"	"Y"	"0.002648634954356647"	1	"40"	"N"	"0.13574189870456868"	0	"na"	"N"	"0.05686927876009488"	0	"na"	""	""	"shared"
"105"	"EMC1"	"EMC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"EMC1_all"	1180	24	"0.099734656206"	"0.095"	"Y"	"0.0000"	5	"12, 15, 52, 78, 465"	"Y"	"4.157921284243231e-05"	1	"78"	"Y"	"1.9002749520375142e-12"	6	"12, 18, 78, 369, 465, 899"	"Y"	"1.7175957015159544e-05"	1	"78"	"Y"	"2.1066429277598233e-07"	2	"12, 78"	"EMC1_sequences_filtered_longestORFs_mafft_prank"	"EMC1"	1244	12	"0.086985697800"	"0.078"	"Y"	3e-04	0	"na"	"N"	"0.9999999852489055"	0	"na"	"Y"	"0.015439278403327431"	1	"379"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"106"	"ERC1"	"ERC1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"ERC1_all_part2"	2964	23	"0.028298194705"	"0.026"	"N"	"1.0000"	2	"1032, 1650"	"N"	"0.9999997397626769"	0	"na"	"Y"	"0.033457191003739346"	1	"1157"	"N"	"1.0"	0	"na"	"na"	"na"	0	"na"	"ERC1_sequences_filtered_longestORFs_mafft_prank"	"ERC1"	1375	12	"0.027094668976"	"0.034"	"Y"	0	16	"15, 116, 179, 210, 252, 272, 276, 303, 733, 770, 791, 936, 1048, 1294, 1310, 1343"	"N"	"0.9999997881796159"	0	"na"	"N"	"0.10268514270834504"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"107"	"ERGIC1"	"ERGIC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ERGIC1_all"	2087	24	"0.023345501207"	"0.031"	"N"	"0.1159"	3	"716, 881, 1888"	"N"	"0.999999995759481"	0	"na"	"N"	"0.999999995701728"	0	"na"	"N"	"0.47568471864150097"	0	"na"	"N"	"0.09807723484934663"	0	"na"	"ERGIC1_sequences_filtered_longestORFs_mafft_prank"	"ERGIC1"	1465	12	"0.022575771558"	"0.023"	"Y"	9e-04	0	"na"	"N"	"0.9999999999167812"	0	"na"	"Y"	"0.00011792618765757527"	4	"311, 555, 557, 593"	"Y"	"0.0003889732433008302"	1	"42"	"Y"	"4.010538272964363e-05"	1	"42"	""	""	"shared"
"108"	"ERLEC1"	"ERLEC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ERLEC1_all"	948	24	"0.104367811799"	"0.091"	"N"	"0.7714"	1	"594"	"N"	"0.08373381050046967"	0	"na"	"Y"	"1.208691486785895e-05"	3	"80, 84, 594"	"N"	"0.13614973585056028"	0	"na"	"Y"	"0.008906267825990811"	1	"594"	"ERLEC1_sequences_filtered_longestORFs_mafft_prank"	"ERLEC1"	667	12	"0.082385943670"	"0.072"	"N"	1	0	"na"	"N"	"0.9999995963563284"	0	"na"	"N"	"0.44653121358043824"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8179124315538415"	0	"na"	""	""	"shared"
"109"	"ERMP1"	"ERMP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ERMP1_all"	1474	24	"0.146897076813"	"0.144"	"N"	"1.0000"	1	"1029"	"N"	"0.9999994656338067"	0	"na"	"N"	"0.4670119434862723"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.41644536602029525"	0	"na"	"ERMP1_sequences_filtered_longestORFs_mafft_prank"	"ERMP1"	1194	12	"0.149068402197"	"0.170"	"N"	0.1256	4	"540, 835, 1061, 1171"	"N"	"0.9999962720800251"	0	"na"	"Y"	"0.01098965332408625"	3	"192, 540, 835"	"Y"	"1.528971094116435e-54"	0	""	"N"	"0.640183772061703"	0	"na"	""	""	"shared"
"110"	"ERO1B"	"ERO1B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"ERO1B_all_part1"	713	24	"0.144332632602"	"0.124"	"Y"	"0.0000"	4	"142, 260, 657, 659"	"N"	"0.11579955951793047"	0	"na"	"Y"	"0.00040734388036182246"	2	"117, 659"	"Y"	"0.03212887887065816"	1	"659"	"Y"	"0.003883571729315563"	2	"117, 659"	"ERO1B_bat_select_mafft_prank"	"ERO1B"	777	11	"0.036193322757664"	"0.039"	"N"	1	1	"386"	"N"	"0.999999978684628"	0	"na"	"N"	"0.183149246065694"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"111"	"ERP44"	"ERP44_sequences_filtered_longestORFs_mafft_mincov_prank"	"ERP44_all"	490	24	"0.061612699441"	"0.061"	"N"	"1.0000"	0	"na"	"N"	"0.9999996678757822"	0	"na"	"N"	"0.9817544807540798"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"ERP44_sequences_filtered_longestORFs_mafft_prank"	"ERP44"	406	12	"0.125984511307"	"0.117"	"N"	0.3705	1	"375"	"N"	"0.9765941371983475"	0	"na"	"Y"	"0.029236998391373198"	2	"151, 349"	"N"	"0.8244819741389342"	0	"na"	"N"	"0.2065939513149769"	0	"na"	""	""	"shared"
"112"	"ETFA"	"ETFA_sequences_filtered_longestORFs_mafft_mincov_prank"	"ETFA_all"	565	24	"0.146391319474"	"0.142"	"N"	"0.4242"	0	"na"	"N"	"0.9999989998773798"	0	"na"	"N"	"0.9999999456895253"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"ETFA_bat_select_mafft_prank"	"ETFA"	463	9	"0.146615831118747"	"0.130"	"N"	0.0544	4	"95, 149, 252, 281"	"N"	"0.999999019068154"	0	"na"	"N"	"0.0850280041309942"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.997004495503217"	0	"na"	""	""	"shared"
"113"	"EXOSC2"	"EXOSC2_sequences_filtered_longestORFs_mafft_mincov_prank"	"EXOSC2_all"	356	24	"0.091497263455"	"0.086"	"Y"	"0.0029"	1	"273"	"N"	"0.39378783387535415"	0	"na"	"Y"	"0.0031125919477734336"	1	"273"	"N"	"0.33187396687004317"	0	"na"	"Y"	"0.004668114668763444"	1	"273"	"EXOSC2_sequences_filtered_longestORFs_mafft_prank"	"EXOSC2"	385	12	"0.025921840818"	"0.026"	"N"	0.3959	0	"na"	"N"	"0.9999998283474417"	0	"na"	"N"	"0.37938250291261894"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.32013900080090807"	0	"na"	""	""	"shared"
"114"	"EXOSC3"	"EXOSC3_sequences_filtered_longestORFs_mafft_mincov_prank"	"EXOSC3_all"	660	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"EXOSC3_sequences_filtered_longestORFs_mafft_prank"	"EXOSC3"	595	12	"0.227318217329"	"0.253"	"Y"	1e-04	5	"236, 237, 359, 516, 586"	"N"	"0.9999975995671482"	0	"na"	"N"	"0.9999954704296937"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"out"	""	"shared"
"115"	"EXOSC3[0-1446]"	"EXOSC3_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to1446"	"EXOSC3_all[0-1446]"	482	24	"0.252155776644"	"0.283"	"N"	"0.4502"	1	"355"	"N"	"0.9999997810494063"	0	"na"	"N"	"0.989660099799516"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8737159116878438"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"116"	"EXOSC3[1445-1980]"	"EXOSC3_sequences_filtered_longestORFs_mafft_mincov_prank_frag1445to1980"	"EXOSC3_all[1445-1980]"	178	24	"0.130672208650"	"0.098"	"N"	"0.8982"	0	"na"	"N"	"0.999997030236135"	0	"na"	"N"	"0.24883453846931733"	0	"na"	"N"	"0.7749164979609964"	0	"na"	"N"	"0.41065575275239785"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"117"	"EXOSC5"	"EXOSC5_sequences_filtered_longestORFs_mafft_mincov_prank"	"EXOSC5_all"	655	24	"0.158412543907"	"0.144"	"N"	"0.0546"	5	"45, 75, 85, 195, 527"	"N"	"0.9999983293078317"	0	"na"	"N"	"0.9999896164493057"	0	"na"	"N"	"0.11452066407509162"	0	"na"	"N"	"0.06056730820722026"	0	"na"	"EXOSC5_sequences_filtered_longestORFs_mafft_prank"	"EXOSC5"	262	12	"0.160152245278"	"0.126"	"N"	1	1	"262"	"N"	"0.9999987936937942"	0	"na"	"N"	"0.11318162974892028"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.43823499246502895"	0	"na"	""	""	"shared"
"118"	"EXOSC8"	"EXOSC8_sequences_filtered_longestORFs_mafft_mincov_prank"	"EXOSC8_all"	615	24	"0.090310320350"	"0.095"	"N"	"0.5335"	1	"393"	"N"	"0.9999997629786602"	0	"na"	"N"	"0.912799268290154"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"EXOSC8_sequences_filtered_longestORFs_mafft_prank"	"EXOSC8"	423	12	"0.082600654877"	"0.097"	"N"	0.1557	0	"na"	"N"	"0.9309740292184903"	0	"na"	"N"	"0.6234791303960312"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9910403787728692"	0	"na"	""	""	"shared"
"119"	"EZR"	"RDX_sequences_filtered_longestORFs_D450gp1_prank"	"RDX_450-1"	1257	16	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"120"	"EZR[0-1458]"	"RDX_sequences_filtered_longestORFs_D450gp1_prank_frag0to1458"	"RDX_450-1[0-1458]"	486	16	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"121"	"EZR[1457-3771]"	"RDX_sequences_filtered_longestORFs_D450gp1_prank_frag1457to3771"	"RDX_450-1[1457-3771]"	771	16	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"122"	"F2RL1"	"F2RL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"F2RL1_all"	456	24	"0.172965347235"	"0.174"	"N"	"0.8985"	7	"52, 93, 116, 117, 146, 197, 243"	"N"	"0.9999991196286157"	0	"na"	"N"	"0.4428525110189645"	0	"na"	"N"	"0.9980019986678341"	0	"na"	"N"	"0.14198980780184772"	0	"na"	"F2RL1_sequences_filtered_longestORFs_mafft_prank"	"F2RL1"	658	12	"0.263764597190"	"0.275"	"N"	0.9952	2	"291, 585"	"N"	"0.9996548647569119"	0	"na"	"N"	"0.3131339900240242"	0	"na"	"N"	"0.30635828375793595"	0	"na"	"Y"	"0.03815875724067897"	0	""	""	""	"shared"
"123"	"FAM162A"	"FAM162A_sequences_filtered_longestORFs_mafft_mincov_prank"	"FAM162A_all"	441	23	"0.495702659669"	"0.486"	"N"	"0.0732"	4	"216, 248, 359, 417"	"N"	"0.9999982422493291"	0	"na"	"N"	"0.9969494196392291"	0	"na"	"N"	"0.8521437889663354"	0	"na"	"N"	"1.0"	0	"na"	"FAM162A_sequences_filtered_longestORFs_mafft_prank"	"FAM162A"	165	12	"0.314688153010"	"0.297"	"N"	1	1	"110"	"N"	"0.9999961526695074"	0	"na"	"N"	"0.9997915583517777"	0	"na"	"N"	"0.8564151774836369"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"124"	"FAM8A1"	"FAM8A1_sequences_filtered_longestORFs_mafft_mincov_prank"	"FAM8A1_all"	513	23	"0.319375325659"	"0.315"	"Y"	"0.0000"	7	"39, 65, 157, 164, 196, 203, 429"	"N"	"0.8832244818632264"	0	"na"	"N"	"0.3500512376933276"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5504605431263127"	0	"na"	"FAM8A1_sequences_filtered_longestORFs_mafft_prank"	"FAM8A1"	415	7	"0.300775892864"	"0.310"	"Y"	0	4	"81, 167, 370, 372"	"N"	"0.5340650845200143"	0	"na"	"N"	"0.3150290637888533"	0	"na"	"N"	"0.3246524673583498"	0	"na"	"N"	"0.17325340282141558"	0	"na"	""	""	"shared"
"125"	"FAM98A"	"FAM98A_sequences_filtered_longestORFs_mafft_mincov_prank"	"FAM98A_all"	534	24	"0.062431170167"	"0.063"	"N"	"0.1823"	2	"147, 463"	"N"	"0.9999984346830816"	0	"na"	"N"	"0.9983244449715577"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"FAM98A_sequences_filtered_longestORFs_mafft_prank"	"FAM98A"	578	12	"0.098310121572"	"0.097"	"N"	1	2	"257, 483"	"N"	"0.9999995394556359"	0	"na"	"N"	"0.07255626993746797"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9733612415242943"	0	"na"	""	""	"shared"
"126"	"FAR2"	"FAR2_sequences_filtered_longestORFs_mafft_mincov_prank"	"FAR2_all"	600	23	"0.182877187700"	"0.178"	"Y"	"0.0318"	8	"90, 258, 355, 361, 366, 390, 394, 426"	"N"	"0.9999987208547277"	0	"na"	"Y"	"0.011029202919481548"	7	"38, 57, 350, 355, 390, 395, 434"	"N"	"1.0"	0	"na"	"N"	"0.5548818892753271"	0	"na"	"FAR2_sequences_filtered_longestORFs_mafft_prank"	"FAR2"	647	12	"0.286288870471"	"0.294"	"N"	0.1165	13	"77, 86, 220, 253, 382, 404, 414, 448, 473, 476, 480, 491, 492"	"N"	"0.9999983422953944"	0	"na"	"Y"	"0.024591036714567804"	0	""	"N"	"1.0"	0	"na"	"Y"	"0.015452260123908388"	0	""	""	""	"shared"
"127"	"FASTKD5"	"FASTKD5_sequences_filtered_longestORFs_mafft_mincov_prank"	"FASTKD5_all"	856	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"FASTKD5_sequences_filtered_longestORFs_mafft_prank"	"FASTKD5"	817	12	"0.374982035489"	"0.367"	"N"	0.9776	10	"138, 308, 366, 515, 520, 594, 600, 652, 698, 722"	"N"	"0.9999991593125638"	0	"na"	"N"	"0.8774701783296314"	0	"na"	"N"	"0.9139311852710953"	0	"na"	"N"	"0.5241381418084765"	0	"na"	""	""	"shared"
"128"	"FBLN5"	"FBLN5_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"FBLN5_all_part2"	833	23	"0.030690326246"	"0.035"	"Y"	"0.0407"	3	"276, 435, 513"	"N"	"0.999999999134161"	0	"na"	"N"	"0.4336451674061179"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.889585193163243"	0	"na"	"FBLN5_sequences_filtered_longestORFs_mafft_prank"	"FBLN5"	483	12	"0.042568879668"	"0.060"	"N"	0.445	6	"17, 20, 24, 28, 337, 452"	"N"	"0.9999996906595267"	0	"na"	"Y"	"0.00010356540885555263"	4	"52, 77, 337, 343"	"N"	"1.0"	0	"na"	"N"	"0.07207846223875822"	0	"na"	""	""	"shared"
"129"	"FBN1"	"FBN1_sequences_filtered_longestORFs_mafft_mincov_prank"	"FBN1_all"	3406	24	"0.038434217562"	"0.039"	"N"	"0.8306"	8	"237, 351, 434, 527, 699, 1776, 2386, 2396"	"N"	"0.9999991758489827"	0	"na"	"Y"	"5.104448658255552e-10"	5	"237, 351, 1651, 2474, 3171"	"N"	"0.9990004998331715"	0	"na"	"Y"	"0.002831354669654163"	1	"237"	"FBN1_sequences_filtered_longestORFs_mafft_prank"	"FBN1"	3278	12	"0.054493632386"	"0.053"	"Y"	1e-04	13	"260, 264, 591, 601, 945, 1111, 1273, 2468, 2472, 2474, 2531, 2639, 2970"	"N"	"0.9999994289357158"	0	"na"	"Y"	"2.7685531965957994e-30"	46	"5, 40, 264, 483, 534, 547, 579, 585, 591, 594, 601, 605, 609, 610, 702, 821, 944, 945, 956, 1000, 1010, 1075, 1086, 1111, 1116, 1158, 1185, 1306, 1314, 2073, 2176, 2358, 2472, 2493, 2503, 2531, 2547, 2639, 2663, 2709, 2739, 2964, 2975, 2978, 2989, 2992"	"N"	"1.0"	0	"na"	"N"	"0.5236142656478218"	0	"na"	""	""	"shared"
"130"	"FBN2"	"FBN2_sequences_filtered_longestORFs_D262gp2_prank"	"FBN2_262-2"	2986	23	"0.058141909331"	"0.055"	"Y"	"0.0181"	16	"2, 17, 146, 151, 448, 535, 626, 1117, 1261, 1448, 2578, 2885, 2918, 2927, 2949, 2961"	"N"	"0.9999994367537278"	0	"na"	"Y"	"2.137785086310192e-06"	3	"2859, 2918, 2949"	"N"	"1.0"	0	"na"	"N"	"0.08399483249039745"	0	"na"	"FBN2_sequences_filtered_longestORFs_mafft_prank"	"FBN2"	3160	12	"0.023665389839"	"0.023"	"N"	0.0771	0	"na"	"N"	"0.9999997339728351"	0	"na"	"Y"	"0.0014312589561602672"	1	"557"	"N"	"1.0"	0	"na"	"Y"	"0.00012666053537745443"	0	""	""	""	"shared"
"131"	"FBN3"	"FBN2_sequences_filtered_longestORFs_D262gp1_prank"	"FBN2_262-1"	3098	8	"0.075040246419"	"0.077"	"Y"	"0.0077"	28	"157, 385, 392, 451, 476, 501, 812, 947, 1074, 1224, 1303, 1311, 1510, 1941, 2059, 2121, 2151, 2163, 2195, 2299, 2512, 2557, 2701, 2806, 2842, 2869, 2899, 2948"	"N"	"0.9999999246865656"	0	"na"	"Y"	"7.324171065597635e-06"	1	"2195"	"N"	"1.0"	0	"na"	"Y"	"2.2257538137977913e-07"	1	"2195"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"132"	"FBXL12"	"FBXL12_sequences_filtered_longestORFs_mafft_mincov_prank"	"FBXL12_all"	591	24	"0.073022781587"	"0.055"	"N"	"0.1536"	1	"322"	"N"	"0.9999994807423247"	0	"na"	"Y"	"0.03536570274492349"	1	"529"	"N"	"1.0"	0	"na"	"Y"	"0.04504920239354142"	0	""	"FBXL12_sequences_filtered_longestORFs_mafft_prank"	"FBXL12"	448	11	"0.180408268769"	"0.178"	"N"	0.9491	2	"126, 217"	"N"	"0.9999997133555054"	0	"na"	"N"	"0.9999958146114571"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"133"	"FGFR1OP"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"CEP43_bat_realign_mafft_prank"	"CEP43"	744	9	"0.225205772812912"	"na"	"Y"	0	13	"8, 33, 158, 183, 184, 216, 226, 392, 527, 547, 606, 705, 722"	"N"	"0.999999517868789"	0	"na"	"N"	"0.999998489017576"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	""	""	"onlybats"
"134"	"FKBP10"	"FKBP10_sequences_filtered_longestORFs_mafft_mincov_prank"	"FKBP10_all"	762	24	"0.105142268569"	"0.077"	"N"	"0.1334"	5	"186, 266, 290, 650, 684"	"N"	"0.9999997345549115"	0	"na"	"N"	"0.7034130703651661"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.4733122312095017"	0	"na"	"FKBP10_sequences_filtered_longestORFs_mafft_prank"	"FKBP10"	762	12	"0.072710369966"	"0.065"	"N"	1	2	"292, 534"	"N"	"0.999999733494441"	0	"na"	"Y"	"1.7077542347156384e-05"	4	"13, 404, 633, 654"	"N"	"1.0"	0	"na"	"N"	"0.07368176001775298"	0	"na"	""	""	"shared"
"135"	"FKBP15"	"FKBP15_sequences_filtered_longestORFs_mafft_mincov_prank"	"FKBP15_all"	2307	24	"0.348522026055"	"0.368"	"N"	"0.0745"	18	"197, 220, 284, 379, 529, 670, 1072, 1128, 1226, 1864, 1873, 1925, 1942, 1971, 2056, 2233, 2247, 2272"	"N"	"0.727349884676276"	0	"na"	"N"	"0.37093542957316483"	0	"na"	"N"	"0.3008931682480237"	0	"na"	"N"	"0.05442128136810543"	0	"na"	"FKBP15_sequences_filtered_longestORFs_mafft_prank"	"FKBP15"	1713	11	"0.405532667972"	"0.414"	"N"	0.7179	18	"529, 685, 729, 739, 831, 910, 1016, 1261, 1270, 1277, 1299, 1345, 1397, 1401, 1425, 1460, 1484, 1710"	"N"	"0.9925079224056861"	0	"na"	"N"	"0.7717260901757526"	0	"na"	"N"	"0.8428215734729201"	0	"na"	"N"	"0.3555817849784105"	0	"na"	""	""	"shared"
"136"	"FKBP7"	"FKBP7_sequences_filtered_longestORFs_mafft_mincov_prank"	"FKBP7_all"	391	24	"0.170022738137"	"0.178"	"N"	"0.1511"	2	"21, 369"	"N"	"0.9999977482400823"	0	"na"	"N"	"0.9838865974223817"	0	"na"	"Y"	"0.04285212686703629"	0	""	"Y"	"0.025706793075600774"	0	""	"FKBP7_sequences_filtered_longestORFs_mafft_prank"	"FKBP7"	240	12	"0.180121006561"	"0.171"	"N"	1	1	"46"	"N"	"0.9999996374315945"	0	"na"	"N"	"0.6213643144580647"	0	"na"	"N"	"0.6077449349025996"	0	"na"	"N"	"0.2265023406764399"	0	"na"	""	""	"shared"
"137"	"FOXRED2"	"FOXRED2_sequences_filtered_longestORFs_mafft_mincov_prank"	"FOXRED2_all"	1173	24	"0.191970360300"	"0.133"	"N"	"0.1980"	8	"79, 114, 120, 352, 427, 867, 885, 903"	"N"	"0.9999983380435137"	0	"na"	"N"	"0.06957879480939025"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.07265740261039663"	0	"na"	"FOXRED2_sequences_filtered_longestORFs_mafft_prank"	"FOXRED2"	755	12	"0.134359965249"	"0.121"	"N"	0.898	3	"87, 120, 740"	"N"	"0.9999998008388701"	0	"na"	"Y"	"0.001575189368270399"	2	"84, 700"	"N"	"0.2822392961406876"	0	"na"	"Y"	"0.0009046160123937779"	1	"700"	""	""	"shared"
"138"	"FYCO1"	"FYCO1_sequences_filtered_longestORFs_mafft_mincov_prank"	"FYCO1_all"	1663	24	"0.328824144839"	"0.235"	"Y"	"0.0013"	38	"136, 163, 278, 383, 432, 443, 494, 499, 508, 511, 573, 609, 619, 627, 653, 679, 680, 779, 818, 853, 920, 935, 970, 981, 1069, 1111, 1121, 1153, 1164, 1269, 1270, 1287, 1293, 1310, 1311, 1318, 1498, 1523"	"Y"	"0.0153341304108026"	0	""	"Y"	"0.0005174023095309059"	2	"475, 605"	"Y"	"0.0019323855559132215"	0	""	"Y"	"8.564970983330033e-08"	3	"475, 605, 981"	"FYCO1_sequences_filtered_longestORFs_mafft_prank"	"FYCO1"	1559	12	"0.200940115292"	"0.178"	"N"	1	12	"426, 548, 555, 617, 739, 838, 1100, 1119, 1143, 1288, 1337, 1491"	"N"	"0.999999143834796"	0	"na"	"Y"	"0.0015300410923087886"	2	"654, 658"	"N"	"1.0"	0	"na"	"Y"	"0.0014840209753573341"	0	""	""	""	"shared"
"139"	"G3BP1"	"G3BP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"G3BP1_all"	809	23	"0.116495516837"	"0.130"	"Y"	"0.0000"	2	"310, 516"	"N"	"0.9999996229940535"	0	"na"	"N"	"0.9998159116523289"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"G3BP1_sequences_filtered_longestORFs_mafft_prank"	"G3BP1"	627	12	"0.069912136916"	"0.076"	"N"	0.0511	1	"228"	"N"	"0.9999993102139902"	0	"na"	"Y"	"0.0024806339846634813"	3	"228, 279, 295"	"N"	"1.0"	0	"na"	"N"	"0.3649481464542307"	0	"na"	""	""	"shared"
"140"	"G3BP2"	"G3BP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"G3BP2_all"	707	24	"0.113306470399"	"0.102"	"N"	"1.0000"	0	"na"	"N"	"0.9999999799033505"	0	"na"	"N"	"0.9799314289805671"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"G3BP2_sequences_filtered_longestORFs_mafft_prank"	"G3BP2"	764	12	"0.034798575288"	"0.037"	"N"	0.0772	1	"297"	"N"	"0.9999995021181678"	0	"na"	"Y"	"0.0012394486334593303"	6	"102, 297, 321, 322, 361, 362"	"N"	"1.0"	0	"na"	"N"	"0.1439916452768443"	0	"na"	""	""	"shared"
"141"	"GCC1"	"GCC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GCC1_all"	786	24	"0.140108711944"	"0.112"	"N"	"0.8781"	7	"136, 141, 186, 210, 243, 400, 631"	"N"	"0.9999998427856677"	0	"na"	"N"	"0.0837780362668937"	0	"na"	"N"	"0.7842715137719616"	0	"na"	"N"	"0.05948684995596509"	0	"na"	"GCC1_sequences_filtered_longestORFs_mafft_prank"	"GCC1"	777	12	"0.131322794958"	"0.116"	"N"	1	5	"122, 295, 452, 560, 773"	"N"	"0.9999986720449392"	0	"na"	"Y"	"0.004154874385133235"	3	"115, 635, 773"	"N"	"1.0"	0	"na"	"N"	"0.1115815014935742"	0	"na"	""	""	"shared"
"142"	"GCC2"	"GCC2_sequences_filtered_longestORFs_mafft_mincov_prank"	"GCC2_all"	2086	23	"0.302010959802"	"0.303"	"Y"	"0.0000"	17	"272, 484, 725, 840, 854, 962, 978, 1009, 1030, 1079, 1119, 1160, 1162, 1221, 1354, 1420, 1849"	"N"	"0.9299629112699199"	0	"na"	"Y"	"0.04692042024176004"	0	""	"Y"	"0.0003740952925822641"	0	""	"Y"	"7.257937161707046e-07"	3	"712, 989, 1887"	"GCC2_sequences_filtered_longestORFs_mafft_prank"	"GCC2"	1964	12	"0.348634040936"	"0.353"	"N"	1	10	"4, 168, 359, 572, 754, 835, 844, 1088, 1648, 1771"	"N"	"0.9999955911541166"	0	"na"	"N"	"0.9928567907992257"	0	"na"	"N"	"0.7467685359751176"	0	"na"	"N"	"0.05825065161934166"	0	"na"	""	""	"shared"
"143"	"GDF15"	"GDF15_sequences_filtered_longestORFs_mafft_mincov_prank"	"GDF15_all"	649	22	"0.428031914784"	"0.282"	"N"	"0.9834"	9	"154, 193, 240, 328, 390, 391, 395, 564, 600"	"N"	"0.9999967579508652"	0	"na"	"N"	"0.40726170973963327"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.04183591909302521"	0	""	"GDF15_sequences_filtered_longestORFs_mafft_prank"	"GDF15"	497	10	"0.319838196439"	"0.315"	"Y"	0.0174	0	"na"	"N"	"0.9999993294002226"	0	"na"	"N"	"0.20622425783304632"	0	"na"	"N"	"0.12938018997736164"	0	"na"	"Y"	"0.002459001268223089"	0	""	""	""	"shared"
"144"	"GFER"	"GFER_sequences_filtered_longestORFs_mafft_mincov_prank"	"GFER_all"	767	23	"0.096157214611"	"0.149"	"N"	"0.4222"	3	"57, 578, 645"	"N"	"0.9999999440099161"	0	"na"	"N"	"0.22207500172338218"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.011504695759988848"	0	""	"GFER_sequences_filtered_longestORFs_mafft_prank"	"GFER"	399	12	"0.226737253726"	"0.174"	"N"	0.0642	9	"25, 43, 51, 81, 96, 98, 100, 183, 235"	"N"	"0.999999819256589"	0	"na"	"N"	"0.9999843940257892"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.38558253897972294"	0	"na"	""	""	"shared"
"145"	"GGCX"	"GGCX_sequences_filtered_longestORFs_mafft_mincov_prank"	"GGCX_all"	902	22	"0.141790335883"	"0.155"	"N"	"0.0608"	9	"121, 139, 480, 510, 575, 755, 803, 874, 888"	"N"	"0.9999991049293753"	0	"na"	"N"	"0.7014332238556994"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8693582353985212"	0	"na"	"GGCX_sequences_filtered_longestORFs_mafft_prank"	"GGCX"	789	12	"0.188048507476"	"0.197"	"N"	0.3047	7	"3, 6, 44, 73, 369, 559, 602"	"N"	"0.9999999635792853"	0	"na"	"Y"	"0.0015589109782107025"	2	"3, 6"	"N"	"1.0"	0	"na"	"N"	"0.09008514502924835"	0	"na"	""	""	"shared"
"146"	"GGH"	"GGH_sequences_filtered_longestORFs_mafft_mincov_prank"	"GGH_all"	653	24	"0.537605700623"	"0.492"	"Y"	"0.0031"	15	"154, 156, 160, 168, 214, 218, 219, 362, 369, 376, 383, 385, 435, 450, 563"	"Y"	"0.001022489106548882"	1	"326"	"Y"	"1.1351511475411773e-05"	3	"320, 326, 563"	"Y"	"0.00010266903456292367"	1	"326"	"Y"	"5.9830200464470715e-05"	6	"320, 326, 365, 375, 444, 563"	"GGH_sequences_filtered_longestORFs_mafft_prank"	"GGH"	368	12	"0.591154988946"	"0.537"	"Y"	4e-04	17	"39, 43, 59, 64, 77, 137, 190, 199, 208, 212, 214, 233, 235, 237, 251, 304, 360"	"Y"	"1.5180867978519774e-05"	2	"181, 306"	"Y"	"1.792342416742801e-07"	6	"39, 60, 181, 306, 343, 360"	"Y"	"1.6129997609789524e-07"	3	"39, 181, 306"	"Y"	"5.747015887185025e-08"	7	"39, 60, 142, 181, 306, 343, 360"	""	""	"shared"
"147"	"GHITM"	"GHITM_sequences_filtered_longestORFs_mafft_mincov_prank"	"GHITM_all"	884	24	"0.335711480208"	"0.323"	"N"	"0.1357"	3	"173, 603, 778"	"Y"	"0.0011744480359077473"	1	"778"	"Y"	"1.4247727737106612e-05"	3	"610, 616, 778"	"Y"	"2.2522404244010904e-05"	3	"610, 616, 778"	"Y"	"2.8751235606937854e-07"	3	"610, 616, 778"	"GHITM_sequences_filtered_longestORFs_mafft_prank"	"GHITM"	388	12	"0.167849730148"	"0.173"	"N"	0.9976	2	"75, 82"	"N"	"0.9999967320267126"	0	"na"	"N"	"0.7529621985552206"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8113952356431783"	0	"na"	""	""	"shared"
"148"	"GIGYF2"	"GIGYF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"GIGYF2_all"	1732	24	"0.088166548262"	"0.085"	"Y"	"0.0000"	7	"236, 299, 300, 305, 308, 616, 781"	"N"	"0.9427686958718544"	0	"na"	"Y"	"0.03934986707940697"	1	"673"	"Y"	"0.01862966642107099"	0	""	"Y"	"0.023777869115414657"	0	""	"GIGYF2_sequences_filtered_longestORFs_mafft_prank"	"GIGYF2"	1775	12	"0.101148943720"	"0.095"	"Y"	7e-04	8	"376, 460, 492, 751, 847, 1554, 1571, 1579"	"N"	"0.9999998979728896"	0	"na"	"N"	"0.2678306633449832"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"149"	"GLA"	"GLA_sequences_filtered_longestORFs_mafft_mincov_prank"	"GLA_all"	530	23	"0.444934110253"	"0.423"	"Y"	"0.0000"	11	"52, 90, 165, 190, 211, 212, 310, 329, 382, 454, 526"	"N"	"0.08453147942725119"	0	"na"	"Y"	"0.005149948312421734"	1	"57"	"Y"	"0.036044535783949824"	0	""	"Y"	"0.02239315381713757"	2	"57, 522"	"GLA_sequences_filtered_longestORFs_mafft_prank"	"GLA"	484	12	"0.348782356590"	"0.332"	"N"	0.1253	10	"31, 48, 188, 197, 245, 300, 307, 309, 439, 446"	"N"	"0.15476483315065273"	0	"na"	"Y"	"0.0009800253365856771"	7	"32, 48, 56, 200, 300, 446, 474"	"N"	"0.13642230780341247"	0	"na"	"N"	"0.06148266584972039"	0	"na"	""	""	"shared"
"150"	"GNB1"	"GNB1_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"GNB1_rem"	372	24	"0.012137123323"	"0.011"	"Y"	"0.0022"	1	"32"	"N"	"0.999999758795213"	0	"na"	"N"	"0.6414748978562623"	0	"na"	"N"	"0.9704455335487553"	0	"na"	"N"	"0.6350827332461038"	0	"na"	"GNB1_bat_select_add-2_mafft_prank"	"GNB1"	340	12	"0.00183424062126851"	"0.002"	"N"	0.9997	0	"na"	"N"	"0.999999973761533"	0	"na"	"N"	"0.999999846015283"	0	"na"	"N"	"0.997004495503217"	0	"na"	"N"	"0.997004495503217"	0	"na"	""	""	"shared"
"151"	"GNB2"	"GNB1_sequences_filtered_longestORFs_D433gp2_prank"	"GNB1_433-2"	773	24	"0.026645613067"	"0.019"	"N"	"1.0000"	0	"na"	"N"	"0.999999830218272"	0	"na"	"N"	"0.9950733443889277"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"152"	"GNB3"	"GNB1_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"GNB1_all_part1"	567	24	"0.028088129054"	"0.021"	"N"	"0.3844"	0	"na"	"N"	"0.9999994591695766"	0	"na"	"N"	"0.34624918465316773"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"153"	"GNB4"	"GNB1_sequences_filtered_longestORFs_D433gp1_prank"	"GNB1_433-1"	365	24	"0.035279825090"	"0.035"	"N"	"1.0000"	0	"na"	"N"	"0.9999999993274287"	0	"na"	"N"	"0.9931883458700896"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.997004495503217"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"154"	"GNG5"	"GNG5_sequences_filtered_longestORFs_mafft_mincov_prank"	"GNG5_all"	601	24	"0.481274164068"	"0.532"	"Y"	"0.0002"	2	"415, 435"	"N"	"0.9999998548751242"	0	"na"	"N"	"0.9999904134392855"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"GNG5_sequences_filtered_longestORFs_mafft_prank"	"GNG5"	113	12	"0.326582203040"	"0.361"	"N"	0.0987	3	"54, 56, 97"	"N"	"0.9999964835763402"	0	"na"	"N"	"0.9990756526614606"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9588697805725648"	0	"na"	"Recombination triggered by two shorter seq with diff Nter"	""	"shared"
"155"	"GNG5_like"	"GNG5_sequences_filtered_longestORFs_D189gp2_prank"	"GNG5_189-2"	96	10	"1.076352311929"	"1.336"	"N"	"0.9298"	0	"na"	"N"	"0.9999999999998295"	0	"na"	"N"	"0.9893947262238464"	0	"na"	"N"	"0.8589882807411348"	0	"na"	"N"	"0.8589882807411348"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"156"	"GOLGA2"	"GOLGA2_sequences_filtered_longestORFs_mafft_mincov_prank"	"GOLGA2_all"	1684	24	"0.305393987169"	"0.257"	"N"	"0.1462"	19	"23, 168, 253, 724, 790, 849, 858, 935, 1142, 1144, 1153, 1166, 1431, 1569, 1577, 1579, 1580, 1581, 1583"	"N"	"0.9999991368589777"	0	"na"	"Y"	"0.025893707763014754"	1	"1579"	"N"	"1.0"	0	"na"	"Y"	"3.682200582975814e-06"	0	""	"GOLGA2_sequences_filtered_longestORFs_mafft_prank"	"GOLGA2"	1260	12	"0.283638729032"	"0.247"	"Y"	6e-04	28	"77, 79, 125, 126, 139, 144, 148, 149, 211, 217, 224, 322, 330, 335, 364, 479, 519, 530, 534, 819, 835, 852, 960, 1027, 1153, 1185, 1198, 1206"	"N"	"0.999999815638165"	0	"na"	"N"	"0.16516295628386798"	0	"na"	"N"	"0.7565399032147061"	0	"na"	"Y"	"0.00012577700758464264"	0	""	""	""	"shared"
"157"	"GOLGA3"	"GOLGA3_sequences_filtered_longestORFs_mafft_mincov_prank"	"GOLGA3_all"	1900	22	"0.163723593406"	"0.147"	"Y"	"0.0000"	16	"48, 218, 235, 393, 504, 817, 820, 847, 849, 855, 861, 930, 1154, 1169, 1437, 1824"	"N"	"0.9999997475752344"	0	"na"	"N"	"0.24136126411156225"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"na"	"na"	0	"na"	"GOLGA3_sequences_filtered_longestORFs_mafft_prank"	"GOLGA3"	1770	12	"0.198279547667"	"0.161"	"N"	1	18	"26, 55, 58, 85, 140, 199, 341, 684, 777, 816, 823, 847, 986, 1232, 1245, 1335, 1636, 1673"	"N"	"0.999999400046543"	0	"na"	"N"	"0.5381094011389551"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.09965909171569372"	0	"na"	""	""	"shared"
"158"	"GOLGA7"	"GOLGA7_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"GOLGA7_all_part1"	183	24	"0.156756002379"	"0.147"	"Y"	"0.0000"	3	"108, 110, 126"	"Y"	"0.00022950324671518768"	1	"126"	"Y"	"1.926716958405556e-07"	1	"126"	"Y"	"1.1467426728354779e-05"	1	"126"	"Y"	"1.4006346635015994e-05"	2	"105, 126"	"GOLGA7_bat_select_mafft_prank"	"GOLGA7"	149	12	"0.220573583150933"	"0.207"	"Y"	0	0	"na"	"Y"	"2.70705925441226e-07"	1	"123"	"Y"	"1.75104775190395e-09"	1	"123"	"Y"	"9.285332670143659e-11"	1	"123"	"Y"	"2.0005777681870837e-11"	1	"123"	""	""	"shared"
"159"	"GOLGA7[0-312]"	"GOLGA7_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag0to312"	"GOLGA7_all_part1[0-312]"	104	24	"0.042677487252"	"0.037"	"N"	"1.0000"	0	"na"	"N"	"0.9999999986654302"	0	"na"	"N"	"0.9999788010460965"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6401837720616302"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"160"	"GOLGA7[311-549]"	"GOLGA7_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag311to549"	"GOLGA7_all_part1[311-549]"	79	24	"0.189995883167"	"0.257"	"N"	"1.0000"	0	"na"	"N"	"0.9999999991825348"	0	"na"	"N"	"0.7828405678089209"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6804506362045939"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"161"	"GOLGB1"	"GOLGB1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GOLGB1_all"	3732	24	"0.378204440309"	"0.407"	"N"	"0.0796"	43	"83, 140, 142, 154, 159, 185, 590, 608, 643, 743, 763, 987, 1050, 1063, 1226, 1271, 1279, 1326, 1337, 1411, 1471, 1529, 1561, 1578, 1582, 1613, 1616, 1728, 1784, 1785, 1787, 1851, 1852, 1971, 2194, 2700, 2728, 2881, 2963, 3101, 3314, 3593, 3694"	"Y"	"0.04586809391212947"	0	""	"Y"	"0.0001008144633452632"	0	""	"Y"	"2.6360084887481196e-09"	2	"2464, 3105"	"na"	"na"	0	"na"	"GOLGB1_sequences_filtered_longestORFs_mafft_prank"	"GOLGB1"	3379	12	"0.358672957821"	"0.382"	"N"	0.6564	0	"na"	"N"	"0.9999982494643379"	0	"na"	"N"	"0.9977185838627639"	0	"na"	"Y"	"0.012765615648940824"	0	""	"Y"	"0.00020903685120196526"	1	"1864"	""	""	"shared"
"162"	"GORASP1"	"GORASP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GORASP1_all"	1939	24	"0.387956217637"	"0.379"	"N"	"0.1831"	15	"816, 831, 1292, 1417, 1451, 1487, 1526, 1527, 1639, 1695, 1735, 1740, 1749, 1754, 1756"	"N"	"0.10802784002302251"	0	"na"	"Y"	"0.04870295760413275"	1	"1740"	"Y"	"0.012919725848616241"	0	""	"Y"	"0.006984932149948331"	2	"1740, 1756"	"GORASP1_sequences_filtered_longestORFs_mafft_prank"	"GORASP1"	812	11	"0.313024592727"	"0.279"	"N"	0.8267	5	"196, 462, 553, 599, 615"	"N"	"0.7718451596308276"	0	"na"	"N"	"0.28935504135190926"	0	"na"	"N"	"0.29258501645347795"	0	"na"	"N"	"0.07715028546888042"	0	"na"	""	""	"shared"
"163"	"GPAA1"	"GPAA1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GPAA1_all"	1454	24	"0.090726390872"	"0.091"	"N"	"0.9826"	5	"85, 376, 442, 613, 1139"	"N"	"0.9999997631266805"	0	"na"	"N"	"0.3059381800239461"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.16999266328690485"	0	"na"	"GPAA1_sequences_filtered_longestORFs_mafft_prank"	"GPAA1"	725	11	"0.079230590578"	"0.076"	"N"	0.8016	2	"389, 642"	"N"	"0.9999999804449546"	0	"na"	"Y"	"0.008941563540158914"	2	"384, 642"	"N"	"1.0"	0	"na"	"Y"	"0.00018632837199053192"	2	"384, 642"	""	""	"shared"
"164"	"GPX1"	"GPX1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GPX1_all"	982	27	"0.220387050417"	"0.220"	"Y"	"0.0000"	12	"351, 366, 410, 415, 434, 577, 650, 667, 730, 733, 750, 774"	"N"	"0.9999996748506947"	0	"na"	"N"	"0.9999866177422099"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2639488353791985"	0	"na"	"GPX1_sequences_filtered_longestORFs_D150gp2_prank"	"GPX1_150-2"	258	8	"0.167942454881"	"0.134"	"N"	1	0	"na"	"N"	"0.9999995266942944"	0	"na"	"N"	"0.9999786426592591"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"Yes duplication, not perfect groups but ok"	""	"shared"
"165"	"GPX1[0-1218]"	"GPX1_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to1218"	"GPX1_all[0-1218]"	406	27	"0.241667038998"	"0.174"	"Y"	"0.0199"	1	"366"	"N"	"0.9999995226086187"	0	"na"	"N"	"0.9404089421029961"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9493288668427617"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"166"	"GPX1[1217-2946]"	"GPX1_sequences_filtered_longestORFs_mafft_mincov_prank_frag1217to2946"	"GPX1_all[1217-2946]"	576	27	"0.178042757509"	"0.242"	"N"	"0.1176"	8	"4, 85, 171, 190, 244, 261, 280, 324"	"N"	"0.9999991270446289"	0	"na"	"N"	"0.9999470688920213"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7167701941559649"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"167"	"GRIPAP1"	"GRIPAP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GRIPAP1_all"	1711	22	"0.137449468005"	"0.104"	"N"	"0.9914"	5	"366, 467, 473, 949, 1597"	"N"	"0.9971162888884593"	0	"na"	"Y"	"0.0010441129923277768"	17	"101, 206, 218, 226, 259, 260, 263, 273, 278, 452, 461, 539, 709, 714, 720, 735, 925"	"N"	"0.12135926503896373"	0	"na"	"N"	"0.054530232846024596"	0	"na"	"GRIPAP1_sequences_filtered_longestORFs_mafft_prank"	"GRIPAP1"	1409	12	"0.146610466542"	"0.131"	"N"	0.8681	6	"299, 305, 396, 397, 744, 902"	"N"	"0.9712566374068777"	0	"na"	"Y"	"0.00014917901856823743"	6	"73, 288, 297, 299, 305, 520"	"Y"	"0.04411303332245541"	0	""	"Y"	"0.0009509966671486873"	5	"288, 297, 299, 305, 520"	"yes PS"	""	"shared"
"168"	"GRPEL1"	"GRPEL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"GRPEL1_all"	240	24	"0.086719113802"	"0.087"	"N"	"1.0000"	1	"91"	"N"	"0.9999995135173141"	0	"na"	"N"	"0.2577892912415277"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"GRPEL1_sequences_filtered_longestORFs_mafft_prank"	"GRPEL1"	387	12	"0.153021798728"	"0.141"	"Y"	0	2	"334, 380"	"N"	"0.9999989885773742"	0	"na"	"Y"	"0.02362956206208953"	2	"334, 380"	"N"	"0.2059750982048984"	0	"na"	"Y"	"0.011631946006600644"	1	"380"	"yes PS"	""	"shared"
"169"	"GTF2F2"	"GTF2F2_sequences_filtered_longestORFs_mafft_mincov_prank"	"GTF2F2_all"	520	24	"0.063909796339"	"0.061"	"N"	"1.0000"	0	"na"	"N"	"0.9999999905733148"	0	"na"	"N"	"0.9999741529398143"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9980019986673803"	0	"na"	"GTF2F2_sequences_filtered_longestORFs_mafft_prank"	"GTF2F2"	368	12	"0.052374130123"	"0.046"	"N"	1	0	"na"	"N"	"0.9999989068598161"	0	"na"	"N"	"0.9954021165346404"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9990004998336257"	0	"na"	""	""	"shared"
"170"	"HDAC1"	"HDAC2_sequences_filtered_longestORFs_D584gp2_prank"	"HDAC2_584-2"	1127	19	"0.162258780411"	"0.152"	"N"	"1.0000"	9	"81, 343, 376, 396, 423, 436, 454, 457, 500"	"N"	"0.9999998474122666"	0	"na"	"N"	"0.9990237621965757"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"171"	"HDAC2"	"HDAC2_sequences_filtered_longestORFs_D584gp1_prank"	"HDAC2_584-1"	792	22	"0.072625220245"	"0.069"	"Y"	"0.0212"	3	"195, 529, 679"	"N"	"0.9999999633500927"	0	"na"	"N"	"0.9997173382334857"	0	"na"	"Y"	"0.02100489023574836"	0	""	"Y"	"0.005976022895006596"	0	""	"HDAC2_sequences_filtered_longestORFs_D132gp2_prank"	"HDAC2_132-2"	545	10	"0.065456573033"	"0.056"	"N"	0.916	2	"134, 351"	"N"	"0.9999973836886631"	0	"na"	"N"	"0.2806779038483537"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9464851479532084"	0	"na"	"Yes for duplication, only lost 2 species in another group"	""	"shared"
"172"	"HEATR3"	"HEATR3_sequences_filtered_longestORFs_mafft_mincov_prank"	"HEATR3_all"	1645	22	"0.180463336537"	"0.180"	"N"	"0.5376"	3	"531, 582, 626"	"N"	"0.9999979553042962"	0	"na"	"N"	"0.9996892022780154"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9960079893431798"	0	"na"	"HEATR3_sequences_filtered_longestORFs_mafft_prank"	"HEATR3"	842	12	"0.158810119780"	"0.175"	"Y"	0	6	"21, 128, 224, 689, 691, 781"	"N"	"0.9999991490643861"	0	"na"	"N"	"0.3385670045597787"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5168513344917745"	0	"na"	"surprised not under PS, but aln is good"	""	"shared"
"173"	"HECTD1"	"HECTD1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HECTD1_all"	2939	24	"0.021094262608"	"0.019"	"Y"	"0.0001"	4	"684, 1404, 1879, 2028"	"Y"	"0.008901674998077978"	1	"1879"	"Y"	"3.7920189419444137e-11"	2	"1879, 2188"	"Y"	"0.01608287882263056"	0	""	"Y"	"3.2223008399506914e-07"	1	"1879"	"HECTD1_sequences_filtered_longestORFs_mafft_prank"	"HECTD1"	2748	11	"0.018804604118"	"0.017"	"N"	1	2	"1642, 1647"	"N"	"0.14299421412322735"	0	"na"	"Y"	"4.6782268893524087e-07"	1	"1647"	"N"	"0.3266062376117585"	0	"na"	"Y"	"0.00015118595329833632"	1	"1647"	""	""	"shared"
"174"	"HMOX1"	"HMOX1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HMOX1_all"	496	24	"0.251296084380"	"0.171"	"Y"	"0.0011"	9	"41, 111, 113, 208, 215, 314, 327, 399, 402"	"N"	"0.9999996541487833"	0	"na"	"N"	"0.9999864280441805"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"HMOX1_sequences_filtered_longestORFs_mafft_prank"	"HMOX1"	314	12	"0.169891781425"	"0.147"	"Y"	0.0019	5	"100, 197, 229, 240, 268"	"N"	"0.9999980288149674"	0	"na"	"N"	"0.6946305916846283"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8402968976584497"	0	"na"	""	""	"shared"
"175"	"HOOK1"	"HOOK1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HOOK1_all"	901	24	"0.099574669625"	"0.100"	"N"	"0.6019"	1	"391"	"N"	"0.9999996985362031"	0	"na"	"N"	"0.12807058131492954"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"1.0"	0	"na"	"HOOK1_sequences_filtered_longestORFs_mafft_prank"	"HOOK1"	884	12	"0.092760665115"	"0.086"	"N"	0.0686	1	"471"	"N"	"0.9999989485682889"	0	"na"	"N"	"0.10257076456806259"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.42912801555982616"	0	"na"	""	""	"shared"
"176"	"HS2ST1"	"HS2ST1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HS2ST1_all"	467	24	"0.049526435418"	"0.047"	"N"	"0.8304"	0	"na"	"N"	"0.7669728060811652"	0	"na"	"N"	"0.21629317355740055"	0	"na"	"N"	"0.7945336025033196"	0	"na"	"N"	"0.32791527889951105"	0	"na"	"HS2ST1_sequences_filtered_longestORFs_mafft_prank"	"HS2ST1"	460	12	"0.031896401046"	"0.030"	"Y"	0.0201	1	"92"	"N"	"0.9999989824287415"	0	"na"	"Y"	"0.04683669540407693"	1	"154"	"N"	"0.8504412045400103"	0	"na"	"N"	"0.5786832586839825"	0	"na"	""	""	"shared"
"177"	"HS6ST2"	"HS6ST2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"HS6ST2_all_part1"	813	24	"0.270519011833"	"0.221"	"N"	"1.0000"	7	"139, 141, 418, 656, 708, 711, 724"	"Y"	"0.02429023356039424"	1	"418"	"Y"	"0.0051018881067389854"	1	"418"	"N"	"0.05393368730035209"	0	"na"	"Y"	"0.010041788933126234"	1	"418"	"HS6ST2_sequences_filtered_longestORFs_mafft_prank"	"HS6ST2"	815	9	"0.122994671159"	"0.120"	"N"	1	3	"280, 434, 474"	"N"	"0.9999994672208741"	0	"na"	"N"	"0.8009033507567138"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.14926978092209653"	0	"na"	"ok, One seq is gene 3"	""	"shared"
"178"	"HS6ST3"	"HS6ST2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"HS6ST2_all_part2"	480	16	"0.156833587204"	"0.085"	"Y"	"0.0000"	4	"31, 42, 43, 74"	"N"	"0.999999981871497"	0	"na"	"na"	"na"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"179"	"HSBP1"	"HSBP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HSBP1_all"	795	24	"0.362897817634"	"0.408"	"N"	"0.0610"	2	"592, 661"	"N"	"0.78798694179292"	0	"na"	"N"	"0.0894389251807912"	0	"na"	"N"	"0.195929574126888"	0	"na"	"Y"	"0.019139519457233287"	0	""	"HSBP1_bat-select_mafft_prank"	"HSBP1"	110	12	"0.154122572218507"	"0.152"	"N"	1	0	"na"	"N"	"0.999999994110794"	0	"na"	"N"	"0.999980539121756"	0	"na"	"N"	"0.9990004998333987"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"180"	"HYOU1"	"HYOU1_sequences_filtered_longestORFs_mafft_mincov_prank"	"HYOU1_all"	1337	24	"0.158524063377"	"0.136"	"Y"	"0.0014"	15	"139, 165, 201, 393, 553, 554, 563, 665, 798, 801, 803, 833, 850, 863, 1277"	"N"	"0.9999990131896406"	0	"na"	"N"	"0.859796205836504"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"HYOU1_sequences_filtered_longestORFs_mafft_prank"	"HYOU1"	1034	12	"0.186537649602"	"0.170"	"N"	1	4	"683, 971, 993, 1024"	"N"	"0.9999995483232053"	0	"na"	"Y"	"0.0329969447075339"	1	"993"	"N"	"1.0"	0	"na"	"Y"	"0.031054858792339112"	0	""	""	""	"shared"
"181"	"IDE"	"IDE_sequences_filtered_longestORFs_mafft_mincov_prank"	"IDE_all"	1445	24	"0.090773344200"	"0.089"	"Y"	"0.0000"	10	"139, 151, 705, 792, 794, 807, 808, 872, 876, 878"	"Y"	"5.232216490035662e-41"	3	"872, 876, 878"	"Y"	"2.4701413764351294e-66"	3	"872, 876, 878"	"Y"	"5.975956040153828e-44"	3	"872, 876, 878"	"na"	"na"	0	"na"	"IDE_sequences_filtered_longestORFs_mafft_prank"	"IDE"	1637	12	"0.095078927531"	"0.098"	"Y"	0	6	"158, 206, 996, 1000, 1002, 1583"	"Y"	"1.1435776810227844e-27"	1	"1000"	"Y"	"2.952064946346253e-41"	3	"996, 1000, 1002"	"Y"	"8.372002990590578e-34"	3	"996, 1000, 1002"	"na"	"na"	0	"na"	"Recombination: Not surprising given the aln. And it makes sense. PRANK aln from DGINN very different from the one with Muscle that is super conservative. Mostly due to splicing variants with some very cool domains that change within a species. This is what brings the recombination marks. 
Lots of splicing variants within and between species: at Nter and middle too. 
- PS: PS per se does not look much present.
But Genetic Innovation by splicing variants YES.
"	""	"shared"
"182"	"IDE[0-2343]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"IDE_sequences_filtered_longestORFs_mafft_prank_frag0to2343"	"IDE[0-2343]"	781	12	"0.107544646690"	"0.098"	"N"	1	0	"na"	"N"	"0.9999976929984095"	0	"na"	"N"	"0.13026738400942509"	0	"na"	"N"	"0.08681290441412229"	0	"na"	"N"	"0.76337949433652"	0	"na"	""	""	"onlybats"
"183"	"IDE[2342-3240]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"IDE_sequences_filtered_longestORFs_mafft_prank_frag2342to3240"	"IDE[2342-3240]"	299	12	"0.009507244401"	"0.676"	"N"	0.9256	0	"na"	"N"	"0.9999996551129327"	0	"na"	"N"	"0.9999999235783179"	0	"na"	"N"	"0.32497728220613026"	0	"na"	"N"	"0.3246524673583498"	0	"na"	""	""	"onlybats"
"184"	"IDE[3239-4911]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"IDE_sequences_filtered_longestORFs_mafft_prank_frag3239to4911"	"IDE[3239-4911]"	557	12	"0.037340186694"	"0.038"	"N"	0.998	0	"na"	"N"	"0.9999996445067786"	0	"na"	"N"	"0.7042574716702156"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998336257"	0	"na"	""	""	"onlybats"
"185"	"IL17RA"	"IL17RA_sequences_filtered_longestORFs_mafft_mincov_prank"	"IL17RA_all"	1557	23	"0.228451784188"	"0.195"	"N"	"0.1417"	143	"423, 427, 433, 435, 445, 446, 451, 460, 468, 533, 545, 546, 548, 554, 561, 562, 573, 588, 594, 595, 597, 621, 647, 651, 654, 655, 664, 665, 666, 671, 673, 678, 682, 687, 689, 698, 699, 702, 708, 714, 716, 718, 727, 728, 731, 735, 738, 742, 745, 933, 938, 949, 955, 956, 979, 981, 994, 1000, 1021, 1022, 1027, 1028, 1029, 1030, 1031, 1032, 1035, 1040, 1054, 1061, 1066, 1076, 1078, 1131, 1089, 1092, 1105, 1116, 1119, 1129, 1132, 1136, 1138, 1145, 1148, 1170, 1177, 1179, 1187, 1215, 1218, 1229, 1243, 1244, 1247, 1248, 1251, 1255, 1272, 1276, 1282, 1292, 1293, 1295, 1302, 1317, 1322, 1332, 1334, 1339, 1359, 1370, 1373, 1374, 1377, 1379, 1382, 1384, 1392, 1402, 1403, 1405, 1411, 1414, 1416, 1424, 1432, 1439, 1462, 1465, 1471, 1491, 1494, 1508, 1527, 1531, 1535, 1536, 1538, 1541, 1542, 1548, 1553"	"N"	"0.9999996922743339"	0	"na"	"N"	"0.3768769266449034"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.11706803704428821"	0	"na"	"IL17RA_sequences_filtered_longestORFs_mafft_prank"	"IL17RA"	1140	12	"0.387082487423"	"0.291"	"Y"	0.0017	21	"112, 225, 227, 229, 280, 298, 324, 329, 343, 447, 470, 574, 852, 878, 905, 915, 917, 927, 935, 946, 1024"	"N"	"0.9999996775405244"	0	"na"	"N"	"0.6967350668837281"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.0725122330231234"	0	"na"	""	""	"shared"
"186"	"IMPDH1"	"IMPDH2_sequences_filtered_longestORFs_D761gp1_prank"	"IMPDH2_761-1"	2686	17	"0.075725136079"	"0.073"	"N"	"1.0000"	1	"2647"	"N"	"0.9999999780670807"	0	"na"	"N"	"0.9999798880975258"	0	"na"	"Y"	"0.019920618063970656"	0	""	"Y"	"0.009150012807220062"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"187"	"IMPDH2"	"IMPDH2_sequences_filtered_longestORFs_D906gp1_prank"	"IMPDH2_906-1"	1560	24	"0.035412844051"	"0.053"	"N"	"1.0000"	1	"1228"	"N"	"0.9999875873015338"	0	"na"	"N"	"0.9999968708128864"	0	"na"	"N"	"0.9559974818330303"	0	"na"	"Y"	"0.01757988373902485"	1	"165"	"IMPDH2_sequences_filtered_longestORFs_mafft_prank_part2_prank"	"IMPDH2_part2"	538	12	"0.026754574269"	"0.025"	"Y"	0	2	"356, 360"	"Y"	"0.0006852185108705853"	1	"360"	"Y"	"5.378308196075921e-16"	7	"183, 192, 240, 270, 284, 292, 360"	"Y"	"6.114608498512458e-08"	1	"360"	"N"	"nan"	0	"na"	"Yes duplication, perfect separation of groups"	""	"shared"
"188"	"INHBE"	"INHBE_sequences_filtered_longestORFs_mafft_mincov_prank"	"INHBE_all"	416	24	"0.342439624293"	"0.322"	"N"	"1.0000"	5	"64, 178, 214, 245, 268"	"N"	"0.9999995054391861"	0	"na"	"N"	"0.8585915620276827"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.376438722738118"	0	"na"	"INHBE_sequences_filtered_longestORFs_mafft_prank"	"INHBE"	369	12	"0.390243108621"	"0.369"	"Y"	0.0017	6	"5, 72, 101, 204, 222, 224"	"Y"	"0.022636878720498972"	1	"222"	"Y"	"0.028198594818389013"	1	"222"	"Y"	"0.0018941217582224507"	1	"222"	"Y"	"0.0014721961698403688"	1	"222"	""	""	"shared"
"189"	"INTS4"	"INTS4_sequences_filtered_longestORFs_mafft_mincov_prank"	"INTS4_all"	1451	23	"0.065534166740"	"0.069"	"N"	"0.9979"	2	"237, 881"	"N"	"0.9999992099641014"	0	"na"	"N"	"0.6279142548125374"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"INTS4_bat_select_mafft_prank"	"INTS4"	1016	10	"0.0760288371690115"	"0.079"	"N"	0.9908	3	"218, 219, 731"	"N"	"0.999998918289424"	0	"na"	"Y"	"0.00466417072417321"	4	"25, 521, 988, 989"	"N"	"1.0"	0	"na"	"N"	"0.5804219151408183"	0	"na"	""	""	"shared"
"190"	"ITGB1"	"ITGB1_sequences_filtered_longestORFs_mafft_mincov_prank"	"ITGB1_all"	948	24	"0.075389116543"	"0.070"	"Y"	"0.0000"	7	"15, 387, 442, 602, 665, 666, 815"	"Y"	"7.537730013261963e-28"	1	"815"	"Y"	"8.405361714688995e-41"	1	"815"	"Y"	"8.289317990525046e-29"	1	"815"	"Y"	"5.175278539688275e-34"	1	"815"	"ITGB1_sequences_filtered_longestORFs_mafft_prank"	"ITGB1"	880	12	"0.062427808503"	"0.057"	"Y"	0	3	"576, 716, 783"	"Y"	"7.350255927039871e-10"	1	"783"	"na"	"na"	0	"na"	"Y"	"2.825276423737631e-13"	1	"783"	"Y"	"1.5699807337461194e-36"	1	"783"	"Highly conserved gene. PS triggered by one site that is G/Q toggling furing bat evolution over both ancient and recent times as it seems polymorphic now too."	""	"shared"
"191"	"ITGB1[0-2328]"	"ITGB1_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to2328"	"ITGB1_all[0-2328]"	776	24	"0.071589344075"	"0.068"	"N"	"0.1785"	7	"15, 215, 387, 442, 602, 665, 666"	"N"	"0.9999994998407943"	0	"na"	"Y"	"2.7999915159604266e-06"	7	"15, 77, 227, 387, 442, 716, 717"	"N"	"1.0"	0	"na"	"N"	"0.08200295465408007"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"192"	"ITGB1[2327-2844]"	"ITGB1_sequences_filtered_longestORFs_mafft_mincov_prank_frag2327to2844"	"ITGB1_all[2327-2844]"	172	24	"0.011932622339"	"0.026"	"Y"	"0.0060"	1	"39"	"N"	"0.9999999981236556"	0	"na"	"N"	"0.23675279387447562"	0	"na"	"N"	"0.8453538346847493"	0	"na"	"N"	"0.13452570270752423"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"193"	"JAKMIP1"	"JAKMIP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"JAKMIP1_all"	2728	23	"na"	"na"	"N"	"0.9992"	1	"354"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"JAKMIP1_sequences_filtered_longestORFs_mafft_prank"	"JAKMIP1"	1144	9	"0.056908187727"	"0.055"	"Y"	0	11	"704, 908, 910, 925, 926, 928, 953, 974, 991, 1014, 1100"	"N"	"0.9999998754210615"	0	"na"	"Y"	"0.02067784386692642"	2	"640, 1012"	"N"	"1.0"	0	"na"	"N"	"0.9130177108989469"	0	"na"	""	""	"shared"
"194"	"KDELC1"	"POGLUT2_sequences_filtered_longestORFs_mafft_mincov_prank"	"POGLUT2_all"	692	24	"0.167272623386"	"0.167"	"Y"	"0.0013"	7	"12, 30, 119, 120, 475, 540, 587"	"N"	"0.9999989941066417"	0	"na"	"N"	"0.09821116411876424"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"POGLUT2_sequences_filtered_longestORFs_mafft_prank"	"POGLUT2"	580	12	"0.138485204386"	"0.134"	"Y"	0.0082	2	"63, 508"	"N"	"0.9999973182870723"	0	"na"	"N"	"0.9909607594669252"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"Yes two annotations for the same gene"	""	"shared"
"195"	"KDELC2"	"POGLUT3_sequences_filtered_longestORFs_mafft_mincov_prank"	"POGLUT3_all"	767	24	"0.197294336344"	"0.200"	"N"	"0.2944"	3	"35, 545, 767"	"N"	"0.9789947727080898"	0	"na"	"N"	"0.14689032808088523"	0	"na"	"N"	"0.9212719586960403"	0	"na"	"N"	"0.13834565210816457"	0	"na"	"POGLUT3_sequences_filtered_longestORFs_mafft_prank"	"POGLUT3"	874	12	"0.148704946994"	"0.168"	"N"	0.9757	4	"85, 515, 633, 636"	"N"	"0.9999981306108758"	0	"na"	"N"	"0.11188339523965174"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8607079764245881"	0	"na"	""	""	"shared"
"196"	"LARP1"	"LARP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"LARP1_all"	2718	24	"0.076249252518"	"0.085"	"Y"	"0.0000"	33	"962, 986, 1000, 1343, 1352, 1370, 1385, 1680, 1702, 1716, 1726, 1745, 1854, 1956, 2049, 2078, 2079, 2081, 2235, 2390, 2428, 2469, 2488, 2573, 2601, 2619, 2669, 2670, 2686, 2687, 2688, 2689, 2700"	"N"	"0.05302745779921875"	0	"na"	"Y"	"3.048378244134424e-11"	6	"1745, 1821, 1854, 2083, 2390, 2687"	"Y"	"0.04573003390017499"	0	""	"Y"	"0.0004496684610310375"	3	"1821, 1854, 2687"	"LARP1_sequences_filtered_longestORFs_mafft_prank"	"LARP1"	1482	12	"0.100719600329"	"0.091"	"N"	0.4329	0	"na"	"N"	"0.9999980706798364"	0	"na"	"Y"	"1.1845531058214244e-05"	8	"474, 638, 642, 727, 729, 736, 1449, 1450"	"N"	"1.0"	0	"na"	"N"	"0.804125441667414"	0	"na"	""	""	"shared"
"197"	"LARP4B"	"LARP4B_sequences_filtered_longestORFs_mafft_mincov_prank"	"LARP4B_all"	5775	24	"0.175312895094"	"0.193"	"Y"	"0.0003"	11	"1475, 1726, 2604, 4419, 4428, 4444, 4448, 4492, 4810, 5195, 5240"	"N"	"0.9999994670553461"	0	"na"	"Y"	"0.014491164567191335"	1	"5698"	"Y"	"0.00015909643979889065"	0	""	"Y"	"6.772873649070608e-05"	1	"5698"	"LARP4B_sequences_filtered_longestORFs_mafft_prank"	"LARP4B"	2439	12	"0.218732299035"	"0.214"	"N"	0.9753	4	"382, 1330, 1967, 2425"	"N"	"0.999998634645658"	0	"na"	"N"	"0.9999977869790131"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"198"	"LARP7"	"LARP7_sequences_filtered_longestORFs_mafft_mincov_prank"	"LARP7_all"	864	24	"0.209704722289"	"0.175"	"N"	"0.5331"	6	"109, 415, 486, 503, 666, 677"	"N"	"0.5891998189502629"	0	"na"	"Y"	"0.002145546509367734"	11	"109, 383, 399, 419, 422, 434, 497, 658, 661, 666, 677"	"Y"	"0.040966525376057605"	0	""	"Y"	"8.431084951431661e-05"	1	"677"	"LARP7_sequences_filtered_longestORFs_mafft_prank"	"LARP7"	680	11	"0.171027104028"	"0.155"	"N"	0.3683	7	"143, 285, 294, 485, 487, 488, 566"	"N"	"0.9999998387802537"	0	"na"	"N"	"0.6801137687220536"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2621076452154077"	0	"na"	""	""	"shared"
"199"	"LMAN2"	"LMAN2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"LMAN2_all_part1"	747	24	"0.081787077552"	"0.064"	"Y"	"0.0002"	3	"26, 417, 492"	"N"	"0.0893634747928795"	0	"na"	"Y"	"2.004485221084069e-08"	4	"26, 27, 28, 621"	"Y"	"0.012562991117452701"	0	""	"Y"	"0.0015430412072925009"	4	"26, 28, 340, 621"	"LMAN2_sequences_filtered_longestORFs_D100gp1_prank"	"LMAN2_100-1"	400	11	"0.047004307549"	"0.044"	"N"	0.0542	2	"9, 144"	"Y"	"0.036766070641131875"	1	"144"	"Y"	"7.544550390677595e-05"	1	"144"	"Y"	"0.00912260390270626"	1	"144"	"Y"	"0.00012390443189913585"	1	"144"	"Duplication YES. Group ok. PS triggered by a single site. Rest conserved"	""	"shared"
"200"	"LMAN2L"	"LMAN2_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"LMAN2_all_part2"	388	22	"0.034765821851"	"0.050"	"N"	"1.0000"	0	"na"	"N"	"0.9999999991766799"	0	"na"	"N"	"0.9999900233596867"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"201"	"LOX"	"LOX_sequences_filtered_longestORFs_mafft_mincov_prank"	"LOX_all"	562	23	"0.172116636994"	"0.143"	"Y"	"0.0000"	4	"85, 159, 335, 346"	"N"	"0.9999990803330229"	0	"na"	"N"	"0.2641538582060904"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9675385595886871"	0	"na"	"LOX_sequences_filtered_longestORFs_mafft_prank"	"LOX"	487	12	"0.114354273651"	"0.097"	"N"	0.4111	4	"80, 136, 160, 371"	"N"	"0.9999992464989301"	0	"na"	"Y"	"0.0020561936709213246"	5	"27, 86, 108, 115, 136"	"N"	"1.0"	0	"na"	"N"	"0.39534360742614594"	0	"na"	""	""	"shared"
"202"	"MAP7D1"	"MAP7D1_sequences_filtered_longestORFs_mafft_mincov_prank"	"MAP7D1_all"	1517	22	"0.231338346469"	"0.210"	"Y"	"0.0000"	16	"160, 221, 240, 251, 714, 716, 717, 734, 735, 737, 738, 739, 748, 764, 851, 1291"	"N"	"0.9999993949870271"	0	"na"	"N"	"0.9999980106505751"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.842821573471387"	0	"na"	"MAP7D1_sequences_filtered_longestORFs_mafft_prank"	"MAP7D1"	1468	12	"0.198984283374"	"0.197"	"N"	0.9293	5	"363, 724, 911, 1278, 1347"	"N"	"0.9999996340230369"	0	"na"	"N"	"0.9999999762640076"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8302735949806761"	0	"na"	""	""	"shared"
"203"	"MARC1"	"MTARC1_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"MTARC1_all_part1"	871	24	"0.259082353825"	"0.254"	"N"	"0.9494"	6	"119, 256, 300, 310, 321, 793"	"N"	"0.8746790384338535"	0	"na"	"N"	"0.08467836426671232"	0	"na"	"N"	"0.34610952768969544"	0	"na"	"N"	"0.05664225599327754"	0	"na"	"MTARC1_bat_select_mafft_prank"	"MTARC1"	386	9	"0.171114750686732"	"0.188"	"N"	0.0986	32	"7, 30, 31, 38, 39, 41, 46, 48, 62, 64, 68, 74, 82, 85, 91, 94, 113, 120, 162, 179, 183, 211, 218, 220, 245, 270, 273, 300, 306, 331, 336, 371"	"N"	"0.999999770750973"	0	"na"	"N"	"0.99998088852708"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"204"	"MARC2"	"MTARC1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"MTARC1_all_part2"	436	24	"0.344462528827"	"0.308"	"Y"	"0.0018"	4	"4, 93, 203, 205"	"N"	"0.9999980322505768"	0	"na"	"N"	"0.44785466189293366"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.22024824112706862"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"205"	"MARK1"	"MARK1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"MARK1_all_part2"	1260	23	"0.062013277987"	"0.065"	"Y"	"0.0272"	7	"40, 44, 293, 306, 462, 758, 1233"	"Y"	"0.009116381763125295"	1	"758"	"Y"	"3.8693583251427994e-07"	2	"462, 758"	"N"	"0.2763740713275202"	0	"na"	"Y"	"0.005434433476480101"	1	"758"	"MARK1_sequences_filtered_longestORFs_mafft_prank_part2_prank"	"MARK1_part2"	1171	12	"0.052460524012"	"0.051"	"N"	0.221	2	"787, 1071"	"N"	"0.9999997083260012"	0	"na"	"Y"	"0.028467597972819232"	1	"293"	"N"	"1.0"	0	"na"	"N"	"0.7795799733848592"	0	"na"	"Duplication YES. Group ok."	""	"shared"
"206"	"MARK2"	"MARK2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"MARK2_all_part1"	2108	24	"na"	"na"	"N"	"1.0000"	1	"1244"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"MARK2_sequences_filtered_longestORFs_mafft_prank_part1_prank"	"MARK2_part1"	1481	12	"0.023250118338"	"0.025"	"Y"	0	13	"105, 115, 367, 558, 566, 574, 577, 674, 689, 1320, 1370, 1418, 1437"	"N"	"0.9999997391569535"	0	"na"	"Y"	"0.0010837373321862945"	3	"105, 574, 1320"	"Y"	"3.195299245325374e-08"	0	""	"na"	"na"	0	"na"	"Duplication YES. Group ok. 106 seq total so many within sp (indels / splices). Does not look PS positive."	""	"shared"
"207"	"MARK3"	"MARK3_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"MARK3_all_part1"	3633	24	"na"	"na"	"Y"	"0.0195"	3	"385, 491, 3611"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"MARK3_sequences_filtered_longestORFs_mafft_prank_part1_prank"	"MARK3_part1"	1275	12	"0.052301784234"	"0.047"	"Y"	0.0163	2	"443, 672"	"N"	"0.9999998830280743"	0	"na"	"Y"	"0.0003415665249197995"	5	"639, 646, 649, 954, 1171"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"Duplication YES. Group ok."	""	"shared"
"208"	"MAT2B"	"MAT2B_sequences_filtered_longestORFs_mafft_mincov_prank"	"MAT2B_all"	670	24	"0.127391282546"	"0.123"	"N"	"0.4664"	1	"449"	"N"	"0.9999983677043608"	0	"na"	"N"	"0.9952761645355965"	0	"na"	"N"	"0.15198096442869868"	0	"na"	"N"	"0.1512229562062779"	0	"na"	"MAT2B_sequences_filtered_longestORFs_mafft_prank"	"MAT2B"	577	12	"0.069577506008"	"0.083"	"N"	1	0	"na"	"N"	"0.9999995800122605"	0	"na"	"N"	"0.46121680811375965"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"209"	"MDN1"	"MDN1_sequences_filtered_longestORFs_mafft_mincov_prank"	"MDN1_all"	5863	24	"0.250623848616"	"0.255"	"Y"	"0.0003"	75	"275, 330, 342, 481, 546, 553, 703, 714, 1399, 1569, 1691, 1834, 2115, 2149, 2168, 2501, 2510, 2536, 2629, 2944, 3066, 3091, 3130, 3162, 3174, 3265, 3300, 3316, 3413, 3418, 3421, 3469, 3532, 3584, 3587, 3684, 3763, 3857, 3917, 4144, 4155, 4158, 4160, 4196, 4313, 4320, 4323, 4385, 4465, 4466, 4483, 4515, 4535, 4618, 4655, 4673, 4674, 4685, 4753, 4817, 4901, 4936, 5092, 5098, 5200, 5202, 5219, 5238, 5307, 5390, 5474, 5517, 5557, 5726, 5727"	"N"	"0.9999975629864503"	0	"na"	"Y"	"9.882460511621072e-05"	1	"4535"	"N"	"1.0"	0	"na"	"Y"	"9.830704087230954e-06"	0	""	"MDN1_sequences_filtered_longestORFs_mafft_prank"	"MDN1"	5692	12	"0.215443695281"	"0.219"	"N"	0.0659	41	"2, 75, 465, 530, 1027, 1285, 1396, 1410, 1942, 2053, 2155, 2246, 2449, 2623, 2743, 2745, 2866, 2867, 2946, 2957, 2992, 3071, 3166, 3197, 3338, 3458, 3476, 3519, 3757, 3833, 4058, 4564, 4894, 4999, 5018, 5072, 5093, 5200, 5241, 5266, 5333"	"N"	"0.9999999534120445"	0	"na"	"Y"	"1.1414171459035473e-05"	7	"2943, 3032, 3070, 3071, 3197, 3476, 4042"	"N"	"1.0"	0	"na"	"Y"	"0.020181276709079873"	0	""	""	""	"shared"
"210"	"MEPCE"	"MEPCE_sequences_filtered_longestORFs_mafft_mincov_prank"	"MEPCE_all"	973	22	"0.149771190695"	"0.149"	"N"	"0.9796"	2	"41, 639"	"N"	"0.9999979106554746"	0	"na"	"N"	"0.6189175407089369"	0	"na"	"N"	"0.9093729344679998"	0	"na"	"N"	"0.28996356552932095"	0	"na"	"MEPCE_sequences_filtered_longestORFs_mafft_prank"	"MEPCE"	726	12	"0.219093876368"	"0.204"	"N"	0.9352	2	"87, 456"	"N"	"0.2688036084056731"	0	"na"	"Y"	"0.04508406397524983"	1	"105"	"N"	"0.1435603176558531"	0	"na"	"Y"	"0.02266349043863414"	0	""	""	""	"shared"
"211"	"MFGE8"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"MFGE8_sequences_filtered_longestORFs_mafft_prank"	"MFGE8"	646	11	"0.330234703292"	"0.207"	"Y"	0.0112	9	"130, 138, 154, 189, 204, 211, 529, 619, 621"	"N"	"0.9999972678525444"	0	"na"	"Y"	"0.013757050385994894"	1	"339"	"N"	"1.0"	0	"na"	"Y"	"0.0013508787126702152"	1	"339"	""	""	"onlybats"
"212"	"MGRN1"	"MYCBP2_sequences_filtered_longestORFs_mafft_mincov_prank_part5_prank"	"MYCBP2_all_part5"	1872	6	"0.154992630690"	"0.062"	"N"	"0.9862"	5	"978, 1321, 1362, 1376, 1764"	"N"	"0.9999860553670283"	0	"na"	"N"	"0.9990235252610209"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"213"	"MIB1"	"MIB1_sequences_filtered_longestORFs_mafft_mincov_prank"	"MIB1_all"	1103	24	"0.007412542081"	"0.007"	"N"	"1.0000"	0	"na"	"N"	"0.999999995030521"	0	"na"	"N"	"0.9997613544724151"	0	"na"	"N"	"0.9970044955027636"	0	"na"	"N"	"0.9970044955036704"	0	"na"	"MIB1_sequences_filtered_longestORFs_mafft_prank"	"MIB1"	1141	12	"0.010708089720"	"0.010"	"N"	1	0	"na"	"N"	"0.3131853669743744"	0	"na"	"Y"	"3.9565815165420535e-06"	2	"1015, 1045"	"N"	"1.0"	0	"na"	"Y"	"0.00020407969064175605"	0	""	"Highly conserved gene."	""	"shared"
"214"	"MIPOL1"	"MIPOL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"MIPOL1_all"	1757	24	"0.512484277696"	"0.437"	"N"	"0.4608"	6	"122, 129, 150, 227, 292, 408"	"Y"	"8.425034731629987e-05"	1	"1172"	"Y"	"6.773362808447534e-05"	1	"1172"	"Y"	"5.425421818460034e-07"	1	"1172"	"Y"	"4.948555179068949e-07"	2	"152, 1172"	"MIPOL1_sequences_filtered_longestORFs_mafft_prank"	"MIPOL1"	749	12	"0.468056639244"	"0.460"	"Y"	8e-04	6	"93, 99, 436, 610, 611, 664"	"N"	"0.36946219962943133"	0	"na"	"N"	"0.16022450488042922"	0	"na"	"Y"	"0.00033815709241324894"	1	"677"	"Y"	"0.00011077604581825765"	2	"668, 677"	""	""	"shared"
"215"	"MOGS"	"MOGS_sequences_filtered_longestORFs_mafft_mincov_prank"	"MOGS_all"	856	24	"0.205738341931"	"0.205"	"N"	"0.4746"	13	"184, 256, 318, 349, 370, 386, 408, 439, 572, 589, 624, 631, 687"	"N"	"0.9999974359876561"	0	"na"	"N"	"0.7188296929103337"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5856692901443464"	0	"na"	"MOGS_sequences_filtered_longestORFs_mafft_prank"	"MOGS"	846	12	"0.226899466104"	"0.236"	"N"	0.3783	8	"13, 210, 426, 535, 639, 712, 751, 794"	"N"	"0.9999999935716914"	0	"na"	"N"	"0.39973598777987807"	0	"na"	"N"	"0.9464851479540692"	0	"na"	"N"	"0.4950977802807309"	0	"na"	""	""	"shared"
"216"	"MOV10"	"MOV10_sequences_filtered_longestORFs_mafft_mincov_prank"	"MOV10_all"	2125	24	"0.095908440356"	"0.091"	"Y"	"0.0006"	7	"467, 600, 862, 937, 1753, 1799, 1822"	"N"	"0.9999616081998488"	0	"na"	"Y"	"0.0020290899869964403"	2	"371, 1795"	"N"	"0.3516918193780413"	0	"na"	"Y"	"0.010021725425469637"	2	"371, 1795"	"MOV10_bat_cut_mafft_prank"	"MOV10"	1173	12	"0.1932496597342"	"0.196"	"Y"	0.0052	14	"7, 34, 41, 263, 391, 455, 485, 527, 575, 657, 661, 1066, 1067, 1068"	"N"	"0.999998937390611"	0	"na"	"Y"	"0.00327546160514019"	1	"391"	"N"	"1.0"	0	"na"	"Y"	"0.012727376189877581"	0	""	""	""	"shared"
"217"	"MPHOSPH10"	"MPHOSPH10_sequences_filtered_longestORFs_mafft_mincov_prank"	"MPHOSPH10_all"	806	21	"0.312304114872"	"0.320"	"Y"	"0.0001"	8	"72, 187, 197, 301, 323, 400, 418, 494"	"N"	"0.06584789338899043"	0	"na"	"Y"	"0.011553122524699911"	1	"400"	"Y"	"0.03111703066108125"	1	"400"	"Y"	"0.0027203356651058553"	1	"400"	"MPHOSPH10_sequences_filtered_longestORFs_mafft_prank"	"MPHOSPH10"	797	11	"0.219365486705"	"0.214"	"Y"	0	19	"4, 58, 69, 92, 117, 128, 156, 161, 177, 305, 329, 346, 348, 358, 359, 383, 635, 659, 671"	"N"	"0.9999997545747038"	0	"na"	"N"	"0.5769195293685707"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.16202575093392788"	0	"na"	"Also looks under PS from my eyes!"	""	"shared"
"218"	"MRPS2"	"MRPS2_sequences_filtered_longestORFs_mafft_mincov_prank"	"MRPS2_all"	586	24	"0.207851765282"	"0.132"	"Y"	"0.0015"	7	"114, 265, 373, 408, 506, 539, 546"	"N"	"0.9999998996213485"	0	"na"	"N"	"0.11602899210880209"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.0501368004807428"	0	"na"	"MRPS2_sequences_filtered_longestORFs_mafft_prank"	"MRPS2"	721	12	"0.082667692251"	"0.091"	"N"	0.0504	9	"319, 328, 340, 341, 349, 554, 582, 594, 700"	"N"	"0.9999999342931026"	0	"na"	"N"	"0.08515687462553476"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7649077811028417"	0	"na"	""	""	"shared"
"219"	"MRPS25"	"MRPS25_sequences_filtered_longestORFs_mafft_mincov_prank"	"MRPS25_all"	308	24	"0.072366477342"	"0.067"	"N"	"0.0628"	2	"57, 251"	"N"	"0.9999999836779808"	0	"na"	"N"	"0.1225169592175207"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.11406349636372963"	0	"na"	"MRPS25_sequences_filtered_longestORFs_mafft_prank"	"MRPS25"	230	10	"0.154765506724"	"0.135"	"Y"	0.0102	1	"60"	"N"	"0.29016377677605226"	0	"na"	"N"	"0.0547567968301941"	0	"na"	"N"	"0.8436648165963223"	0	"na"	"N"	"0.34438329921892946"	0	"na"	""	""	"shared"
"220"	"MRPS27"	"MRPS27_sequences_filtered_longestORFs_mafft_mincov_prank"	"MRPS27_all"	600	24	"0.395788246295"	"0.406"	"N"	"0.1306"	14	"90, 105, 150, 242, 301, 339, 486, 522, 534, 545, 557, 567, 575, 587"	"N"	"0.07984023514681617"	0	"na"	"Y"	"0.013622007442688537"	2	"462, 587"	"N"	"0.064441335254013"	0	"na"	"Y"	"0.011231870065595896"	2	"462, 587"	"MRPS27_sequences_filtered_longestORFs_mafft_prank"	"MRPS27"	443	11	"0.256108512123"	"0.261"	"Y"	0	6	"10, 49, 74, 413, 425, 436"	"N"	"0.9999995383751568"	0	"na"	"N"	"0.9273291898408674"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"221"	"MRPS5"	"MRPS5_sequences_filtered_longestORFs_mafft_mincov_prank"	"MRPS5_all"	1261	24	"0.416601635924"	"0.417"	"Y"	"0.0000"	16	"165, 306, 309, 314, 330, 375, 387, 557, 789, 893, 894, 928, 982, 1061, 1100, 1248"	"N"	"0.9999981841791056"	0	"na"	"N"	"0.25629686803992613"	0	"na"	"Y"	"0.011855065907644069"	1	"1100"	"Y"	"0.005753194576077027"	1	"1100"	"MRPS5_sequences_filtered_longestORFs_mafft_prank"	"MRPS5"	821	11	"0.223685298522"	"0.209"	"N"	0.9599	3	"362, 609, 795"	"N"	"0.9999982520286537"	0	"na"	"Y"	"0.023335640922836146"	2	"647, 795"	"N"	"0.43127902868882784"	0	"na"	"Y"	"0.03449296116373417"	0	""	""	""	"shared"
"222"	"MRPS5[0-1569]"	"MRPS5_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to1569"	"MRPS5_all[0-1569]"	523	24	"0.591391995411"	"0.581"	"Y"	"0.0346"	9	"158, 165, 306, 309, 314, 330, 375, 387, 393"	"N"	"0.9999982261035529"	0	"na"	"N"	"0.8930677931418386"	0	"na"	"N"	"0.9694755730760753"	0	"na"	"N"	"0.7664391275009605"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"223"	"MRPS5[1568-3783]"	"MRPS5_sequences_filtered_longestORFs_mafft_mincov_prank_frag1568to3783"	"MRPS5_all[1568-3783]"	738	24	"0.303692318833"	"0.309"	"Y"	"0.0027"	9	"34, 266, 370, 371, 405, 459, 538, 573, 577"	"N"	"0.9999972161897498"	0	"na"	"N"	"0.10046273814721357"	0	"na"	"Y"	"0.0058752891684603886"	1	"577"	"Y"	"0.00313853232736479"	1	"577"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"224"	"MSN"	"RDX_sequences_filtered_longestORFs_mafft_mincov_prank_part4_prank"	"RDX_all_part4"	800	23	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"225"	"MTCH1"	"MTCH1_sequences_filtered_longestORFs_mafft_mincov_prank"	"MTCH1_all"	1228	24	"0.106148621761"	"0.100"	"N"	"1.0000"	1	"16"	"N"	"0.9999998145304007"	0	"na"	"N"	"0.9999980835441594"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"MTCH1_sequences_filtered_longestORFs_mafft_prank"	"MTCH1"	581	12	"0.025674791478"	"0.033"	"Y"	2e-04	2	"63, 157"	"N"	"0.99999996765655"	0	"na"	"N"	"0.5322534343704919"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998336257"	0	"na"	""	""	"shared"
"226"	"MYCBP2"	"MYCBP2_sequences_filtered_longestORFs_D358gp1_prank"	"MYCBP2_358-1"	6174	9	"0.036536439670"	"0.052"	"Y"	"0.0199"	1	"4046"	"Y"	"0.00012590724553983797"	2	"20, 4046"	"Y"	"7.794892423779286e-07"	1	"4046"	"Y"	"1.8285266951132942e-06"	0	""	"Y"	"1.5254461930603552e-21"	1	"4046"	"MYCBP2_sequences_filtered_longestORFs_D280gp2_prank"	"MYCBP2_280-2"	5479	10	"0.035837925402"	"0.031"	"Y"	0	7	"734, 735, 736, 3321, 3777, 4000, 4588"	"N"	"0.9980245232149526"	0	"na"	"Y"	"7.416232479052216e-06"	3	"1709, 2296, 3321"	"N"	"0.9970044955063907"	0	"na"	"N"	"0.7505117288341411"	0	"na"	"Duplication ok. No real PS"	""	"shared"
"227"	"NARS2"	"NARS2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NARS2_all"	873	23	"0.327580620578"	"0.329"	"Y"	"0.0000"	7	"80, 88, 99, 193, 246, 408, 435"	"N"	"0.9999998411340256"	0	"na"	"N"	"0.9972664067752461"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9704455335478727"	0	"na"	"NARS2_sequences_filtered_longestORFs_mafft_prank"	"NARS2"	541	12	"0.245685946598"	"0.250"	"N"	1	4	"10, 45, 210, 486"	"N"	"0.3264457921530277"	0	"na"	"Y"	"0.021080669666269154"	2	"212, 317"	"N"	"0.19378615920637357"	0	"na"	"N"	"0.052971565997802054"	0	"na"	""	""	"shared"
"228"	"NAT14"	"NAT14_sequences_filtered_longestORFs_mafft_mincov_prank"	"NAT14_all"	895	22	"0.051237159962"	"0.069"	"Y"	"0.0000"	3	"566, 568, 849"	"N"	"0.9999996429397198"	0	"na"	"N"	"0.9974875609932363"	0	"na"	"Y"	"0.026569269845437157"	0	""	"Y"	"0.005782032583908955"	1	"566"	"NAT14_sequences_filtered_longestORFs_mafft_prank"	"NAT14"	277	10	"0.093943119706"	"0.101"	"N"	1	0	"na"	"N"	"0.9999993868888911"	0	"na"	"N"	"0.1984537133922413"	0	"na"	"N"	"0.9940179640540763"	0	"na"	"N"	"0.13002871087843063"	0	"na"	""	""	"shared"
"229"	"NDFIP2"	"NDFIP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NDFIP2_all"	438	24	"0.318148333387"	"0.323"	"Y"	"0.0169"	0	"na"	"N"	"0.6113666644127715"	0	"na"	"N"	"0.380047992057359"	0	"na"	"N"	"0.5700677873780715"	0	"na"	"N"	"0.18068501722730326"	0	"na"	"NDFIP2_sequences_filtered_longestORFs_mafft_prank"	"NDFIP2"	392	12	"0.306558540650"	"0.282"	"N"	0.9512	3	"3, 6, 86"	"N"	"0.2918213098589899"	0	"na"	"N"	"0.11952480216458904"	0	"na"	"N"	"0.7527666447064592"	0	"na"	"N"	"0.4542988670758048"	0	"na"	"Of interest to Andrea? Looks quite variable"	""	"shared"
"230"	"NDFIP2[0-768]"	"NDFIP2_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to768"	"NDFIP2_all[0-768]"	256	24	"0.525636435491"	"0.598"	"N"	"0.9363"	0	"na"	"N"	"0.7467833782619784"	0	"na"	"N"	"0.47537027029187584"	0	"na"	"N"	"0.2156712546246529"	0	"na"	"N"	"0.1199116568787479"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"231"	"NDFIP2[767-1314]"	"NDFIP2_sequences_filtered_longestORFs_mafft_mincov_prank_frag767to1314"	"NDFIP2_all[767-1314]"	182	24	"0.109800459665"	"0.103"	"Y"	"0.0000"	2	"25, 77"	"N"	"0.8594082389936307"	0	"na"	"N"	"0.1693781494683738"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7687418973112219"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"232"	"NDUFAF1"	"NDUFAF1_sequences_filtered_longestORFs_mafft_mincov_prank"	"NDUFAF1_all"	450	26	"0.378088629476"	"0.344"	"N"	"0.7905"	3	"28, 267, 293"	"N"	"0.05031251612356678"	0	"na"	"Y"	"0.0038219225107270363"	3	"9, 179, 261"	"N"	"0.09856884903487213"	0	"na"	"Y"	"0.006929275615721499"	1	"9"	"NDUFAF1_sequences_filtered_longestORFs_mafft_prank"	"NDUFAF1"	340	12	"0.313655866051"	"0.283"	"N"	0.228	6	"25, 38, 59, 118, 180, 234"	"N"	"0.9999979631704998"	0	"na"	"N"	"0.980061480187931"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"233"	"NDUFAF2"	"NDUFAF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NDUFAF2_all"	248	23	"0.631156540650"	"0.556"	"Y"	"0.0000"	8	"26, 53, 111, 142, 154, 155, 162, 234"	"Y"	"3.620174373133328e-05"	4	"53, 111, 150, 154"	"Y"	"4.768160182666211e-06"	4	"53, 111, 150, 154"	"Y"	"1.0079569546030942e-05"	2	"150, 154"	"Y"	"1.872165254167919e-07"	5	"26, 53, 150, 154, 185"	"NDUFAF2_sequences_filtered_longestORFs_mafft_prank"	"NDUFAF2"	255	12	"0.480516895624"	"0.440"	"N"	1	2	"143, 189"	"N"	"0.7654496880176566"	0	"na"	"N"	"0.6815024673967645"	0	"na"	"N"	"0.33420523455571843"	0	"na"	"N"	"0.09594309727222568"	0	"na"	""	""	"shared"
"234"	"NDUFAF2[0-258]"	"NDUFAF2_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to258"	"NDUFAF2_all[0-258]"	86	23	"0.272153211869"	"0.233"	"N"	"0.5435"	1	"26"	"N"	"0.9262192439088353"	0	"na"	"N"	"0.38493688358895517"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5694980045294837"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"235"	"NDUFAF2[257-744]"	"NDUFAF2_sequences_filtered_longestORFs_mafft_mincov_prank_frag257to744"	"NDUFAF2_all[257-744]"	162	23	"0.733637609760"	"0.532"	"Y"	"0.0000"	6	"25, 56, 68, 69, 76, 148"	"Y"	"5.894163700040056e-05"	3	"25, 64, 68"	"Y"	"1.333015198888184e-05"	3	"25, 64, 68"	"Y"	"4.099747821921156e-05"	3	"25, 64, 68"	"Y"	"4.0427512592929675e-05"	3	"25, 64, 68"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"236"	"NDUFB9"	"NDUFB9_sequences_filtered_longestORFs_mafft_mincov_prank"	"NDUFB9_all"	939	25	"0.327075612351"	"0.329"	"Y"	"0.0000"	8	"264, 271, 279, 296, 340, 368, 422, 777"	"N"	"0.2672952783601943"	0	"na"	"Y"	"0.004655447162966287"	3	"270, 340, 777"	"Y"	"0.0359006456130128"	0	""	"Y"	"0.00036705458059481806"	1	"777"	"NDUFB9_sequences_filtered_longestORFs_mafft_prank"	"NDUFB9"	179	13	"0.127899789326"	"0.123"	"N"	0.461	2	"147, 179"	"N"	"0.9999998990183536"	0	"na"	"N"	"0.08365571153288943"	0	"na"	"N"	"0.967538559589127"	0	"na"	"N"	"0.5015760690660281"	0	"na"	""	""	"shared"
"237"	"NEK9"	"NEK9_sequences_filtered_longestORFs_mafft_mincov_prank"	"NEK9_all"	1091	24	"0.082369224818"	"0.083"	"N"	"0.9698"	1	"371"	"N"	"0.9999988128772882"	0	"na"	"N"	"0.11248384117876256"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5488116360938269"	0	"na"	"NEK9_sequences_filtered_longestORFs_mafft_prank"	"NEK9"	1304	12	"0.105241457601"	"0.107"	"Y"	0	2	"1229, 1301"	"N"	"0.9289259680065098"	0	"na"	"Y"	"0.0004107944994979139"	5	"198, 454, 763, 1210, 1229"	"N"	"0.87197022613315"	0	"na"	"N"	"0.42485812046202354"	0	"na"	""	""	"shared"
"238"	"NEU1"	"NEU1_sequences_filtered_longestORFs_mafft_mincov_prank"	"NEU1_all"	592	23	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"NEU1_sequences_filtered_longestORFs_mafft_prank"	"NEU1"	656	12	"0.153652799692"	"0.140"	"Y"	0	3	"134, 163, 173"	"N"	"0.9999992702499119"	0	"na"	"Y"	"0.008246702419223753"	2	"135, 299"	"N"	"1.0"	0	"na"	"N"	"0.0704395770339975"	0	"na"	""	""	"shared"
"239"	"NGDN"	"NGDN_sequences_filtered_longestORFs_mafft_mincov_prank"	"NGDN_all"	403	24	"0.196746297282"	"0.203"	"N"	"0.2357"	5	"4, 164, 257, 308, 328"	"N"	"0.9999996749607436"	0	"na"	"N"	"0.3367567017973967"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6107912690659221"	0	"na"	"NGDN_sequences_filtered_longestORFs_mafft_prank"	"NGDN"	540	12	"0.205667666328"	"0.206"	"N"	0.885	2	"65, 74"	"N"	"0.9999970287943627"	0	"na"	"N"	"0.9990045122531841"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"240"	"NGLY1"	"NGLY1_sequences_filtered_longestORFs_mafft_mincov_prank"	"NGLY1_all"	1538	24	"0.292983182049"	"0.275"	"Y"	"0.0000"	8	"44, 532, 598, 669, 1047, 1056, 1515, 1520"	"N"	"0.06149275202982891"	0	"na"	"Y"	"0.0010796041125753367"	2	"511, 525"	"N"	"0.12075398317951777"	0	"na"	"Y"	"0.03136696531192716"	2	"511, 525"	"NGLY1_sequences_filtered_longestORFs_mafft_prank"	"NGLY1"	881	11	"0.301206874793"	"0.271"	"Y"	0.0203	10	"271, 293, 296, 352, 360, 441, 467, 731, 770, 801"	"N"	"0.9999972767764821"	0	"na"	"N"	"0.21002568368470978"	0	"na"	"N"	"0.9342604735770164"	0	"na"	"N"	"0.5792622313806218"	0	"na"	""	""	"shared"
"241"	"NIN"	"NIN_sequences_filtered_longestORFs_mafft_mincov_prank"	"NIN_all"	10697	22	"0.211191421675"	"0.224"	"N"	"0.9199"	18	"870, 997, 1333, 1339, 1397, 1493, 8963, 9014, 9230, 9320, 9441, 9530, 9534, 9538, 9540, 9605, 9744, 10042"	"N"	"0.9999960651953295"	0	"na"	"N"	"0.8519489054018843"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"NIN_sequences_filtered_longestORFs_mafft_prank"	"NIN"	4996	12	"0.261282750429"	"0.277"	"Y"	0	17	"799, 1201, 2720, 2848, 3016, 3075, 3253, 3304, 3433, 3600, 3670, 3674, 3711, 3736, 4477, 4809, 4927"	"N"	"0.9999998423954946"	0	"na"	"N"	"0.9997736992394146"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na explained from aln. 83 seq total for only 12 sp"	""	"shared"
"242"	"NINL"	"NINL_sequences_filtered_longestORFs_mafft_mincov_prank"	"NINL_all"	2604	23	"0.427852487352"	"0.390"	"N"	"0.1028"	40	"340, 592, 637, 639, 644, 692, 840, 1042, 1073, 1096, 1643, 1674, 1687, 1751, 1756, 1782, 1793, 1801, 1806, 1817, 1823, 1837, 1842, 1853, 1898, 1907, 1924, 1977, 2017, 2028, 2118, 2155, 2166, 2220, 2230, 2237, 2247, 2463, 2485, 2536"	"N"	"0.9999971376751129"	0	"na"	"Y"	"0.031103287956552407"	0	""	"N"	"0.9990004998331715"	0	"na"	"Y"	"0.0004429737698240615"	0	""	"NINL_sequences_filtered_longestORFs_mafft_prank"	"NINL"	1320	9	"0.291186931610"	"0.330"	"N"	0.9073	9	"66, 178, 186, 398, 475, 557, 679, 750, 896"	"N"	"0.9999973543625383"	0	"na"	"N"	"0.9984432776236783"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8286147072325962"	0	"na"	""	""	"shared"
"243"	"NLRX1"	"NLRX1_sequences_filtered_longestORFs_mafft_mincov_prank"	"NLRX1_all"	1342	24	"0.191851581154"	"0.158"	"N"	"0.1076"	14	"18, 19, 20, 22, 40, 61, 64, 66, 71, 151, 291, 343, 1149, 1159"	"N"	"0.9999996792794777"	0	"na"	"Y"	"0.016986494811331982"	5	"5, 64, 68, 151, 341"	"N"	"0.9960079893431798"	0	"na"	"Y"	"0.0033193045197521024"	0	""	"NLRX1_sequences_filtered_longestORFs_mafft_prank"	"NLRX1"	1159	12	"0.174592688656"	"0.141"	"Y"	0	10	"187, 222, 224, 375, 430, 860, 946, 978, 1142, 1147"	"N"	"0.9999986254943348"	0	"na"	"N"	"0.738781808329577"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9665715046378442"	0	"na"	""	""	"shared"
"244"	"NOL10"	"NOL10_sequences_filtered_longestORFs_mafft_mincov_prank"	"NOL10_all"	939	24	"0.078755544009"	"0.073"	"Y"	"0.0000"	2	"353, 403"	"N"	"0.9999863641398594"	0	"na"	"N"	"0.9999998543389772"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9970044955036704"	0	"na"	"NOL10_sequences_filtered_longestORFs_mafft_prank"	"NOL10"	729	12	"0.063202933312"	"0.060"	"N"	0.2658	3	"154, 215, 703"	"N"	"0.999999928002583"	0	"na"	"Y"	"4.5613424449856195e-06"	5	"215, 495, 559, 703, 723"	"N"	"1.0"	0	"na"	"N"	"0.36240242983237164"	0	"na"	""	""	"shared"
"245"	"NPC2"	"NPC2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NPC2_all"	780	24	"0.508028059871"	"0.457"	"Y"	"0.0001"	10	"25, 39, 65, 82, 83, 129, 138, 146, 544, 719"	"N"	"0.2328510019315863"	0	"na"	"N"	"0.057719371839172945"	0	"na"	"Y"	"0.004719747389456752"	0	""	"Y"	"0.001593217057936894"	3	"65, 138, 545"	"NPC2_sequences_filtered_longestORFs_mafft_prank"	"NPC2"	165	12	"0.315560158487"	"0.305"	"N"	0.5947	2	"24, 127"	"N"	"0.9999973983449045"	0	"na"	"N"	"0.9965413927524406"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"246"	"NPTX1"	"NPTX1_sequences_filtered_longestORFs_mafft_mincov_prank"	"NPTX1_all"	1410	22	"0.026765310295"	"0.025"	"N"	"0.8825"	4	"1047, 1059, 1266, 1356"	"N"	"0.999999757519647"	0	"na"	"N"	"0.9987352907898548"	0	"na"	"N"	"0.9445940693675817"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"NPTX1_sequences_filtered_longestORFs_mafft_prank"	"NPTX1"	1097	10	"0.023105165192"	"0.040"	"N"	1	3	"828, 836, 1039"	"N"	"0.999999886609664"	0	"na"	"N"	"0.4011492862110374"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"2.8919339494199573e-05"	1	"237"	"Mix of 2 genes. Was not automatically separated because less than 8 sp on one side. (which makes sense from bat seq)."	""	"shared"
"247"	"NSD2"	"NSD2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NSD2_all"	1918	23	"0.113995429131"	"0.106"	"N"	"1.0000"	5	"394, 543, 760, 1821, 1865"	"N"	"0.9999997044524643"	0	"na"	"Y"	"1.2044331264821216e-05"	8	"161, 380, 394, 413, 422, 423, 543, 957"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.22672895630598963"	0	"na"	"NSD2_sequences_filtered_longestORFs_mafft_prank"	"NSD2"	1967	11	"0.148197094993"	"0.115"	"N"	1	0	"na"	"N"	"0.9999995612362053"	0	"na"	"Y"	"0.029190967734365886"	0	""	"N"	"1.0"	0	"na"	"Y"	"0.03699398304371079"	1	"603"	""	""	"shared"
"248"	"NUP210"	"NUP210_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP210_all"	3638	21	"0.168684208369"	"0.126"	"N"	"0.2227"	16	"165, 377, 603, 682, 754, 911, 932, 2372, 2434, 2715, 2778, 2930, 3035, 3053, 3118, 3466"	"N"	"0.9999984922953896"	0	"na"	"Y"	"0.000560055585517515"	1	"1061"	"N"	"nan"	0	"na"	"Y"	"2.1210801528009748e-05"	1	"1061"	"NUP210_sequences_filtered_longestORFs_mafft_prank"	"NUP210"	2228	12	"0.177550614839"	"0.172"	"N"	0.4556	0	"na"	"N"	"0.9999997886771094"	0	"na"	"Y"	"8.160634990754697e-05"	3	"658, 2019, 2113"	"N"	"1.0"	0	"na"	"Y"	"4.6409796015133775e-05"	0	""	""	""	"shared"
"249"	"NUP214"	"NUP214_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP214_all"	3953	24	"0.292847695065"	"0.296"	"N"	"0.8924"	19	"190, 753, 754, 1093, 1207, 1303, 1351, 1440, 1479, 1585, 1747, 1764, 1813, 1871, 1981, 2016, 2066, 2081, 2489"	"N"	"0.9999922165455296"	0	"na"	"Y"	"1.1777447939908644e-06"	1	"753"	"Y"	"0.00045875236651099906"	0	""	"na"	"na"	0	"na"	"NUP214_sequences_filtered_longestORFs_mafft_prank"	"NUP214"	2724	12	"0.210062800297"	"0.217"	"Y"	0	25	"390, 481, 516, 521, 750, 942, 972, 997, 1022, 1366, 1490, 1531, 1546, 1647, 1663, 1690, 1712, 1731, 1739, 1740, 1749, 1764, 1873, 2079, 2398"	"N"	"0.999970409340112"	0	"na"	"N"	"0.1098127018402205"	0	"na"	"Y"	"8.395727754465127e-32"	0	""	"Y"	"7.202171687694045e-28"	0	""	"Interesting One"	""	"shared"
"250"	"NUP54"	"NUP54_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP54_all"	1305	24	"0.074379806320"	"0.066"	"N"	"1.0000"	4	"22, 796, 857, 978"	"N"	"0.9643347227277823"	0	"na"	"N"	"0.08374034939195321"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.40171998009784604"	0	"na"	"NUP54_sequences_filtered_longestORFs_mafft_prank"	"NUP54"	916	12	"0.108833344666"	"0.099"	"N"	1	0	"na"	"N"	"0.9999996841821074"	0	"na"	"N"	"0.941432132856242"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.912105149544586"	0	"na"	""	""	"shared"
"251"	"NUP58"	"NUP58_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"NUP58_all_part2"	789	23	"0.133796894965"	"0.119"	"Y"	"0.0000"	5	"4, 27, 749, 785, 786"	"Y"	"2.009975645682337e-10"	3	"749, 785, 786"	"Y"	"5.342817945735711e-19"	3	"749, 785, 786"	"Y"	"2.0243847696632473e-09"	3	"749, 785, 786"	"Y"	"2.614364680334922e-12"	4	"34, 749, 785, 786"	"NUP58_sequences_filtered_longestORFs_mafft_prank"	"NUP58"	895	12	"0.132254962191"	"0.137"	"Y"	0	4	"119, 300, 493, 494"	"N"	"0.6561255751539898"	0	"na"	"N"	"0.0912602799029464"	0	"na"	"N"	"0.7053931302698415"	0	"na"	"N"	"0.16316391010000333"	0	"na"	""	""	"shared"
"252"	"NUP58[0-1824]"	"NUP58_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank_frag0to1824"	"NUP58_all_part2[0-1824]"	608	23	"0.089059781633"	"0.076"	"N"	"0.9854"	1	"341"	"N"	"0.9999981249060811"	0	"na"	"N"	"0.6914227965133435"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9792189645688326"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"253"	"NUP58[1823-2367]"	"NUP58_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank_frag1823to2367"	"NUP58_all_part2[1823-2367]"	181	23	"0.232722736013"	"0.226"	"Y"	"0.0402"	1	"141"	"N"	"0.9999999380397658"	0	"na"	"N"	"0.6299675459043648"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9980019986672668"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"254"	"NUP62"	"NUP62_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP62_all"	732	24	"0.260507976485"	"0.210"	"Y"	"0.0000"	5	"165, 234, 299, 306, 552"	"N"	"0.9999998184657835"	0	"na"	"N"	"0.8330241635844272"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.4766370400829789"	0	"na"	"NUP62_sequences_filtered_longestORFs_mafft_prank"	"NUP62"	580	12	"0.235365629051"	"0.174"	"Y"	0	10	"48, 115, 120, 218, 265, 397, 398, 430, 530, 554"	"N"	"0.9999989763287668"	0	"na"	"N"	"0.9999982760524598"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7921535735248961"	0	"na"	"Recent duplications in the Myo. Quite variable for PS"	""	"shared"
"255"	"NUP88"	"NUP88_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP88_all"	893	24	"0.171479668096"	"0.169"	"N"	"0.6253"	9	"42, 156, 251, 293, 644, 696, 779, 812, 876"	"N"	"0.9999992328360564"	0	"na"	"N"	"0.13278352449163852"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.2602792983786746"	0	"na"	"NUP88_sequences_filtered_longestORFs_mafft_prank"	"NUP88"	900	12	"0.144093639598"	"0.145"	"N"	0.9989	2	"45, 421"	"N"	"0.9999997299401366"	0	"na"	"N"	"0.06441114316564217"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.15755195533034877"	0	"na"	""	""	"shared"
"256"	"NUP98"	"NUP98_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUP98_all"	5910	34	"na"	"na"	"Y"	"0.0000"	18	"22, 132, 165, 331, 1153, 1154, 1487, 1507, 1913, 2035, 2051, 2082, 2163, 2598, 2599, 2839, 3514, 4112"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"NUP98_sequences_filtered_longestORFs_mafft_prank"	"NUP98"	1981	12	"0.140604995886"	"0.138"	"N"	0.8774	4	"362, 861, 1046, 1619"	"N"	"0.999997564956411"	0	"na"	"N"	"0.09109567087173494"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8833798408829309"	0	"na"	""	""	"shared"
"257"	"NUTF2"	"NUTF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"NUTF2_all"	493	24	"0.351664349637"	"0.321"	"Y"	"0.0291"	8	"280, 282, 284, 285, 324, 339, 425, 473"	"N"	"0.9208057350375947"	0	"na"	"N"	"0.9995795781363376"	0	"na"	"N"	"0.9579113900669156"	0	"na"	"N"	"0.9880717128617615"	0	"na"	"NUTF2_sequences_filtered_longestORFs_mafft_prank"	"NUTF2"	127	12	"0.098253734861"	"0.086"	"N"	0.3257	0	"na"	"N"	"0.9999954361577017"	0	"na"	"N"	"0.997820688169417"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"258"	"OS9"	"OS9_sequences_filtered_longestORFs_mafft_mincov_prank"	"OS9_all"	2383	24	"0.192502708990"	"0.179"	"N"	"0.1109"	8	"7, 53, 634, 675, 1505, 1514, 1853, 2349"	"N"	"0.9999995736071469"	0	"na"	"N"	"0.1173463127809913"	0	"na"	"N"	"1.0"	0	"na"	"na"	"na"	0	"na"	"OS9_sequences_filtered_longestORFs_mafft_prank"	"OS9"	727	12	"0.221563948134"	"0.211"	"N"	0.2167	4	"198, 333, 340, 465"	"N"	"0.9999988034940425"	0	"na"	"N"	"0.18063582562350763"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.18544443195606533"	0	"na"	""	""	"shared"
"259"	"PABPC1"	"PABPC1_sequences_filtered_longestORFs_D976gp1_prank"	"PABPC1_976-1"	755	14	"0.533694474655"	"0.478"	"N"	"1.0000"	0	"na"	"N"	"0.9994741259976754"	0	"na"	"N"	"0.9826334675013463"	0	"na"	"N"	"0.9665715046374047"	0	"na"	"N"	"0.9380049995304428"	0	"na"	"PABPC1_bat_select_mafft_prank"	"PABPC1"	735	12	"0.0938951370512233"	"0.093"	"N"	0.0509	2	"471, 671"	"N"	"0.972002479200044"	0	"na"	"N"	"0.609585807664959"	0	"na"	"N"	"0.7124824490892332"	0	"na"	"N"	"0.32497728220613026"	0	"na"	""	""	"shared"
"260"	"PABPC3"	"PABPC1_sequences_filtered_longestORFs_D1084gp1_prank"	"PABPC1_1084-1"	917	27	"0.514691593479"	"0.481"	"N"	"0.6181"	0	"na"	"N"	"0.2883573004036036"	0	"na"	"Y"	"0.045318527575407094"	0	""	"Y"	"0.007476429055377534"	0	""	"Y"	"0.0001470114622112897"	1	"461"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"261"	"PABPC4"	"PABPC4_sequences_filtered_longestORFs_D1202gp2_prank"	"PABPC4_1202-2"	1303	24	"0.086971224325"	"0.091"	"Y"	"0.0003"	6	"144, 690, 746, 770, 903, 916"	"N"	"0.9999988697124558"	0	"na"	"N"	"0.1069597779776388"	0	"na"	"Y"	"0.016490018838369237"	0	""	"N"	"0.6319152448996017"	0	"na"	"PABPC4_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"PABPC4_rem"	1601	12	"0.063778768571"	"0.068"	"Y"	0.0362	2	"20, 363"	"N"	"0.9999988545411919"	0	"na"	"N"	"0.9296422664654556"	0	"na"	"N"	"0.9990004998349886"	0	"na"	"N"	"1.0"	0	"na"	"Duplication yes. Group ok. "	""	"shared"
"262"	"PABPC4L"	"PABPC4_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"PABPC4_rem"	817	23	"0.196270905513"	"0.294"	"Y"	"0.0003"	6	"34, 49, 142, 213, 285, 347"	"N"	"0.9999997662380611"	0	"na"	"N"	"0.9992167050999494"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.37120530005746055"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"263"	"PABPC5"	"PABPC4_sequences_filtered_longestORFs_mafft_mincov_prank_part3_prank"	"PABPC4_all_part3"	382	25	"0.062392282727"	"0.059"	"N"	"1.0000"	1	"131"	"N"	"0.999998542565361"	0	"na"	"N"	"0.9999999590731941"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"264"	"PCNT"	"PCNT_sequences_filtered_longestORFs_mafft_mincov_prank"	"PCNT_all"	4529	18	"0.378148780950"	"0.371"	"Y"	"0.0215"	81	"20, 83, 91, 96, 565, 588, 601, 611, 619, 694, 710, 727, 796, 803, 1015, 1092, 1190, 1241, 1255, 1278, 1316, 1336, 1358, 1401, 1459, 1482, 1564, 1614, 1636, 1637, 1647, 1649, 1661, 1667, 1685, 1691, 1692, 1698, 1718, 1735, 1779, 1852, 1908, 2013, 2014, 2111, 2113, 2561, 2564, 2703, 2805, 2899, 2921, 2963, 2970, 2999, 3001, 3007, 3011, 3040, 3084, 3102, 3140, 3151, 3162, 3245, 3271, 3349, 3412, 3424, 3602, 3881, 3894, 3914, 3918, 4023, 4122, 4219, 4269, 4392, 4434"	"N"	"0.5482488609326766"	0	"na"	"Y"	"7.094956322513417e-06"	4	"1614, 2921, 3000, 3162"	"Y"	"7.702235088396207e-06"	0	""	"Y"	"8.241573644122765e-14"	3	"611, 3000, 3162"	"PCNT_sequences_filtered_longestORFs_mafft_prank"	"PCNT"	3992	12	"0.405046328649"	"0.376"	"Y"	0.0151	12	"80, 82, 158, 381, 417, 1478, 1660, 1961, 2385, 2758, 2853, 3877"	"N"	"0.999999364496236"	0	"na"	"N"	"0.10267715781616366"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"8.293819160781511e-06"	0	""	""	""	"shared"
"265"	"PCSK5"	"PCSK6_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"PCSK6_all_part2"	6156	20	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"PCSK6_sequences_filtered_longestORFs_mafft_prank"	"PCSK6"	2988	12	"0.071524736578"	"0.089"	"Y"	0	10	"506, 697, 889, 896, 940, 972, 977, 1830, 1831, 2483"	"N"	"0.9999998047424206"	0	"na"	"N"	"0.9750946580856525"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.14015588661579498"	0	"na"	"Group mix. Gene name: warning. No PS"	"PCSK6. Correct ortho retained."	"shared"
"266"	"PCSK6"	"PCSK6_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PCSK6_all_part1"	2728	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"PCSK6_bat_select_mafft_prank"	"PCSK6"	1654	8	"0.0986985494453695"	"0.089"	"Y"	0	16	"28, 499, 522, 690, 749, 889, 948, 953, 966, 1010, 1303, 1310, 1324, 1325, 1350, 1398"	"N"	"0.999999715678354"	0	"na"	"N"	"0.105937396179248"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"3.761624567607716e-10"	0	""	""	""	"shared"
"267"	"PDE4DIP"	"PDE4DIP_sequences_filtered_longestORFs_mafft_mincov_prank"	"PDE4DIP_all"	6983	22	"na"	"na"	"Y"	"0.0000"	39	"1600, 1988, 1995, 2013, 2083, 2115, 2195, 2273, 2413, 2464, 2468, 2478, 2479, 2484, 2501, 2639, 2734, 2736, 2960, 3042, 3052, 3125, 3127, 3136, 3213, 3276, 3289, 3309, 4254, 4423, 4466, 4488, 4581, 4651, 4656, 4670, 4687, 4986, 5118"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"PDE4DIP_bat_select_check_mafft_prank"	"PDE4DIP"	2894	9	"0.243836905699349"	"0.244"	"N"	0.0597	49	"179, 292, 315, 375, 443, 541, 546, 732, 888, 931, 991, 1201, 1208, 1397, 1437, 1559, 1564, 1583, 1640, 1697, 1783, 1891, 1927, 2005, 2008, 2016, 2018, 2021, 2023, 2027, 2028, 2041, 2135, 2187, 2193, 2194, 2276, 2325, 2364, 2388, 2392, 2450, 2516, 2517, 2526, 2531, 2580, 2855, 2869"	"N"	"0.999997930428758"	0	"na"	"N"	"0.767590091583004"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.20028778934513805"	0	"na"	""	""	"shared"
"268"	"PDZD11"	"PDZD11_sequences_filtered_longestORFs_mafft_mincov_prank"	"PDZD11_all"	482	24	"0.165348956755"	"0.193"	"Y"	"0.0000"	2	"435, 445"	"N"	"0.7082290406313829"	0	"na"	"N"	"0.3351684111209584"	0	"na"	"N"	"0.7363866194560706"	0	"na"	"N"	"0.4041375454214722"	0	"na"	"PDZD11_sequences_filtered_longestORFs_mafft_prank"	"PDZD11"	194	12	"0.049745910610"	"0.049"	"N"	0.0543	1	"188"	"N"	"0.9999997555486587"	0	"na"	"N"	"0.9999754442623039"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"269"	"PIGO"	"PIGO_sequences_filtered_longestORFs_mafft_mincov_prank"	"PIGO_all"	1608	24	"0.236723326058"	"0.264"	"N"	"1.0000"	14	"192, 240, 428, 515, 555, 665, 695, 702, 711, 750, 820, 935, 944, 1408"	"N"	"0.999996608534569"	0	"na"	"N"	"0.11394615645405819"	0	"na"	"N"	"0.14646042844749838"	0	"na"	"Y"	"0.0465606274262097"	0	""	"PIGO_sequences_filtered_longestORFs_mafft_prank"	"PIGO"	1196	12	"0.219447199292"	"0.242"	"N"	0.9565	8	"156, 368, 557, 564, 572, 751, 1046, 1078"	"N"	"0.9999965921255213"	0	"na"	"N"	"0.999991909166045"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8228346580562579"	0	"na"	""	""	"shared"
"270"	"PIGS"	"PIGS_sequences_filtered_longestORFs_mafft_mincov_prank"	"PIGS_all"	676	24	"0.138568117539"	"0.133"	"N"	"1.0000"	1	"637"	"N"	"0.9999997357436208"	0	"na"	"N"	"0.999846628686188"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"PIGS_sequences_filtered_longestORFs_mafft_prank"	"PIGS"	630	12	"0.161492159517"	"0.148"	"N"	0.983	6	"16, 144, 196, 206, 362, 552"	"N"	"0.9999977841650427"	0	"na"	"N"	"0.999601889878112"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9841273200556575"	0	"na"	""	""	"shared"
"271"	"PITRM1"	"PITRM1_sequences_filtered_longestORFs_mafft_mincov_prank"	"PITRM1_all"	2828	24	"0.129790611586"	"0.139"	"Y"	"0.0000"	24	"117, 123, 825, 837, 914, 938, 964, 1162, 1207, 1215, 1218, 1260, 1305, 1307, 1357, 1372, 1455, 1474, 2213, 2333, 2359, 2377, 2662, 2809"	"N"	"0.9999995957969894"	0	"na"	"N"	"0.4076210903185358"	0	"na"	"Y"	"9.157802140678478e-13"	0	""	"Y"	"0.0011004897180721745"	1	"119"	"PITRM1_sequences_filtered_longestORFs_mafft_prank"	"PITRM1"	1084	10	"0.163972160325"	"0.146"	"N"	1	12	"41, 346, 361, 549, 554, 627, 649, 709, 821, 831, 887, 1012"	"N"	"0.9999999867613952"	0	"na"	"N"	"0.1819655863451437"	0	"na"	"Y"	"1.5117468506889957e-09"	0	""	"N"	"0.16332715561929245"	0	"na"	""	""	"shared"
"272"	"PKP2"	"PKP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"PKP2_all"	1127	22	"0.160659314869"	"0.144"	"Y"	"0.0000"	6	"76, 77, 293, 723, 990, 1033"	"N"	"0.9999995148865577"	0	"na"	"N"	"0.9998626427515777"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"PKP2_sequences_filtered_longestORFs_mafft_prank"	"PKP2"	894	7	"0.167343436613"	"0.154"	"N"	1	5	"58, 61, 65, 320, 340"	"N"	"0.9999997007180802"	0	"na"	"N"	"0.9999999889741958"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"Only very few sequences"	""	"shared"
"273"	"PLAT"	"PLAT_sequences_filtered_longestORFs_mafft_mincov_prank"	"PLAT_all"	682	23	"0.210172895832"	"0.167"	"Y"	"0.0052"	11	"100, 179, 209, 339, 368, 429, 467, 534, 552, 659, 677"	"N"	"0.9999987954413861"	0	"na"	"Y"	"0.04713155923609384"	1	"179"	"N"	"1.0"	0	"na"	"Y"	"0.019177836800726614"	0	""	"PLAT_sequences_filtered_longestORFs_mafft_prank"	"PLAT"	598	12	"0.406866539433"	"0.374"	"Y"	0.0254	23	"6, 32, 120, 150, 184, 195, 204, 219, 220, 234, 250, 253, 277, 317, 342, 396, 418, 428, 497, 510, 538, 559, 594"	"N"	"0.9999978119564111"	0	"na"	"N"	"0.1520578715323859"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.628763554467135"	0	"na"	""	""	"shared"
"274"	"PLD3"	"PLD3_sequences_filtered_longestORFs_mafft_mincov_prank"	"PLD3_all"	523	24	"0.106210003370"	"0.086"	"Y"	"0.0002"	2	"392, 483"	"N"	"0.999999916396522"	0	"na"	"N"	"0.24372784306247056"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.22246177275023613"	0	"na"	"PLD3_sequences_filtered_longestORFs_mafft_prank"	"PLD3"	547	12	"0.087847326366"	"0.074"	"N"	1	3	"44, 127, 161"	"N"	"0.9999997026416609"	0	"na"	"N"	"0.0606732522644502"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.08689976073955778"	0	"na"	""	""	"shared"
"275"	"PLEKHA5"	"PLEKHA5_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PLEKHA5_all_part1"	7595	21	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"PLEKHA5_sequences_filtered_longestORFs_mafft_prank"	"PLEKHA5"	2947	11	"0.147404980383"	"0.132"	"N"	1	9	"433, 461, 2453, 2757, 2761, 2784, 2828, 2837, 2873"	"N"	"0.9999997266277579"	0	"na"	"N"	"0.12842097333294247"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.45384479528361066"	0	"na"	""	""	"shared"
"276"	"PLEKHF2"	"PLEKHF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"PLEKHF2_all"	249	23	"0.061384631227"	"0.056"	"N"	"1.0000"	0	"na"	"N"	"0.9999960259305521"	0	"na"	"N"	"0.1687570848704306"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"PLEKHF2_sequences_filtered_longestORFs_mafft_prank"	"PLEKHF2"	249	12	"0.048943152846"	"0.037"	"N"	1	0	"na"	"N"	"0.22983455572188574"	0	"na"	"Y"	"0.006996295069881674"	1	"218"	"N"	"0.20331475164727103"	0	"na"	"Y"	"0.020506774172182902"	1	"218"	""	""	"shared"
"277"	"PLOD2"	"PLOD2_sequences_filtered_longestORFs_mafft_mincov_prank"	"PLOD2_all"	910	24	"0.112917586068"	"0.099"	"N"	"0.9684"	8	"2, 20, 277, 308, 355, 378, 570, 797"	"N"	"0.2972724503773207"	0	"na"	"Y"	"0.00038959564441634636"	1	"20"	"Y"	"0.021004890235729264"	0	""	"Y"	"0.00012390443189924853"	1	"20"	"PLOD2_sequences_filtered_longestORFs_mafft_prank"	"PLOD2"	836	10	"0.095937946781"	"0.082"	"N"	0.0718	5	"64, 79, 80, 84, 673"	"N"	"0.9999986137900636"	0	"na"	"Y"	"0.0006372406189584631"	6	"54, 64, 69, 80, 308, 365"	"N"	"1.0"	0	"na"	"N"	"0.15366198369305042"	0	"na"	""	""	"shared"
"278"	"PMPCA"	"PMPCA_sequences_filtered_longestORFs_mafft_mincov_prank"	"PMPCA_all"	2133	22	"0.090932719246"	"0.095"	"Y"	"0.0409"	9	"262, 311, 349, 962, 1067, 1330, 1890, 1908, 1922"	"N"	"0.9999997696359325"	0	"na"	"Y"	"5.917791328477869e-05"	3	"297, 311, 1190"	"N"	"1.0"	0	"na"	"N"	"0.053718383445887474"	0	"na"	"PMPCA_sequences_filtered_longestORFs_mafft_prank"	"PMPCA"	885	10	"0.072861463768"	"0.085"	"N"	0.8983	6	"153, 154, 503, 521, 662, 776"	"N"	"0.9999991202916366"	0	"na"	"N"	"0.4562990412926383"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"279"	"PMPCB"	"PMPCB_sequences_filtered_longestORFs_mafft_mincov_prank"	"PMPCB_all"	830	24	"0.204359423038"	"0.177"	"Y"	"0.0004"	7	"99, 103, 125, 133, 148, 670, 678"	"N"	"0.18727413961788525"	0	"na"	"Y"	"0.00017242828028838283"	5	"113, 116, 148, 670, 678"	"N"	"0.07699613909573662"	0	"na"	"Y"	"0.011527728176241822"	1	"670"	"PMPCB_sequences_filtered_longestORFs_mafft_prank"	"PMPCB"	496	12	"0.154664421420"	"0.126"	"Y"	0	19	"24, 25, 29, 42, 43, 168, 211, 264, 289, 300, 343, 346, 376, 382, 439, 448, 457, 461, 496"	"N"	"0.9999994096448896"	0	"na"	"Y"	"0.0001485699424057094"	28	"3, 4, 9, 10, 12, 15, 17, 18, 21, 23, 24, 26, 29, 37, 38, 51, 264, 265, 269, 273, 300, 346, 376, 382, 388, 457, 486, 496"	"N"	"1.0"	0	"na"	"N"	"0.6859160738960525"	0	"na"	"Looks like there is indeed some PS. But some of the MEME and BioppM7M8 signal in the middle/Cter portion is weird"	""	"shared"
"280"	"POFUT1"	"POFUT1_sequences_filtered_longestORFs_mafft_mincov_prank"	"POFUT1_all"	777	24	"0.134710840412"	"0.117"	"Y"	"0.0054"	4	"11, 19, 21, 529"	"N"	"0.9999998223093074"	0	"na"	"N"	"0.23449724785509962"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"POFUT1_sequences_filtered_longestORFs_mafft_prank"	"POFUT1"	670	12	"0.150592576223"	"0.136"	"N"	0.2747	1	"580"	"N"	"0.999999332628472"	0	"na"	"Y"	"0.044397322861119"	2	"462, 465"	"N"	"0.911193500295451"	0	"na"	"Y"	"0.03043993138796614"	0	""	""	""	"shared"
"281"	"POLA1"	"POLA1_sequences_filtered_longestORFs_mafft_mincov_prank"	"POLA1_all"	1919	22	"0.301302665223"	"0.259"	"Y"	"0.0000"	11	"122, 123, 270, 547, 836, 847, 955, 1296, 1390, 1633, 1678"	"Y"	"3.723647917907225e-06"	3	"122, 345, 1678"	"Y"	"2.007229115287742e-08"	4	"122, 345, 351, 1678"	"Y"	"0.0014215605953936511"	3	"122, 345, 351"	"na"	"na"	0	"na"	"POLA1_sequences_filtered_longestORFs_mafft_prank"	"POLA1"	1573	12	"0.275408633142"	"0.261"	"N"	0.0588	20	"174, 208, 224, 247, 294, 321, 360, 362, 540, 620, 743, 891, 1164, 1330, 1374, 1494, 1532, 1535, 1538, 1573"	"Y"	"0.00029491151462736847"	2	"294, 341"	"Y"	"4.708850802002232e-09"	4	"294, 341, 1133, 1330"	"Y"	"2.5055557293228085e-06"	0	""	"Y"	"7.047554970330143e-08"	5	"294, 341, 360, 1133, 1573"	"yes PS"	""	"shared"
"282"	"POLA2"	"POLA2_sequences_filtered_longestORFs_mafft_mincov_prank"	"POLA2_all"	998	24	"0.184125429083"	"0.175"	"N"	"1.0000"	5	"356, 436, 496, 498, 513"	"N"	"0.9999988280067147"	0	"na"	"N"	"0.1198582560555339"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.1193135949950122"	0	"na"	"POLA2_sequences_filtered_longestORFs_mafft_prank"	"POLA2"	858	12	"0.203525948892"	"0.214"	"Y"	8e-04	6	"108, 114, 131, 150, 162, 164"	"N"	"0.9999999185247395"	0	"na"	"N"	"0.9806751585650236"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.15350839851485368"	0	"na"	""	""	"shared"
"283"	"POR"	"POR_sequences_filtered_longestORFs_mafft_mincov_prank"	"POR_all"	1040	24	"0.067794049403"	"0.052"	"Y"	"0.0000"	6	"214, 215, 289, 798, 830, 849"	"N"	"0.9999484617067621"	0	"na"	"Y"	"4.880931697279608e-06"	3	"215, 567, 572"	"N"	"0.3620402085436244"	0	"na"	"Y"	"9.194506709446797e-13"	1	"215"	"POR_sequences_filtered_longestORFs_mafft_prank"	"POR"	921	11	"0.086809958980"	"0.083"	"N"	0.7166	4	"217, 367, 377, 774"	"N"	"0.9999998038529349"	0	"na"	"Y"	"0.013382069942123242"	2	"249, 305"	"N"	"1.0"	0	"na"	"Y"	"0.017474720242549"	1	"249"	""	""	"shared"
"284"	"POTPABPC1"	"PABPC1_sequences_filtered_longestORFs_D1084gp2_prank"	"PABPC1_1084-2"	758	10	"0.553227221622"	"0.529"	"N"	"0.9852"	6	"78, 366, 407, 444, 462, 559"	"N"	"0.6978365530075028"	0	"na"	"N"	"0.5416946213143998"	0	"na"	"N"	"0.14284430758455366"	0	"na"	"N"	"0.06405584487014927"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"285"	"PPIL3"	"PPIL3_sequences_filtered_longestORFs_mafft_mincov_prank"	"PPIL3_all"	624	23	"0.167852646185"	"0.178"	"Y"	"0.0037"	2	"54, 316"	"N"	"0.9999980185276931"	0	"na"	"N"	"0.999954805226432"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"PPIL3_sequences_filtered_longestORFs_mafft_prank"	"PPIL3"	235	12	"0.108093140816"	"0.110"	"N"	1	0	"na"	"N"	"0.9999978561116012"	0	"na"	"N"	"0.9579717769964547"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.8940442575002858"	0	"na"	""	""	"shared"
"286"	"PPT1"	"PPT1_sequences_filtered_longestORFs_mafft_mincov_prank"	"PPT1_all"	411	24	"0.170108493272"	"0.181"	"N"	"1.0000"	0	"na"	"N"	"0.9999984412396187"	0	"na"	"N"	"0.32403175500629133"	0	"na"	"N"	"0.9831436846350813"	0	"na"	"N"	"0.2621076452154077"	0	"na"	"PPT1_sequences_filtered_longestORFs_mafft_prank"	"PPT1"	382	12	"0.303232389071"	"0.308"	"Y"	0.0013	4	"69, 90, 129, 170"	"N"	"0.9999996432607713"	0	"na"	"N"	"0.4664126912175116"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9851119396031881"	0	"na"	""	""	"shared"
"287"	"PRIM1"	"PRIM1_sequences_filtered_longestORFs_mafft_mincov_prank"	"PRIM1_all"	637	23	"0.365201136035"	"0.367"	"Y"	"0.0381"	11	"42, 243, 400, 404, 419, 420, 430, 449, 471, 522, 523"	"N"	"0.3772508500342065"	0	"na"	"N"	"0.0922978762770567"	0	"na"	"N"	"0.7772447380686296"	0	"na"	"Y"	"0.019742136871489187"	0	""	"PRIM1_sequences_filtered_longestORFs_mafft_prank"	"PRIM1"	467	12	"0.229678204850"	"0.221"	"N"	0.1124	2	"302, 327"	"Y"	"0.0032052637220846263"	1	"323"	"Y"	"3.0435982275610693e-08"	9	"3, 299, 302, 323, 326, 327, 335, 337, 338"	"N"	"0.9427067691573432"	0	"na"	"Y"	"0.00028844676858805923"	4	"3, 302, 323, 337"	"yes PS"	""	"shared"
"288"	"PRIM2"	"PRIM2_sequences_filtered_longestORFs_mafft_mincov_prank"	"PRIM2_all"	634	19	"0.330737120235"	"0.295"	"Y"	"0.0000"	14	"21, 23, 24, 27, 89, 186, 190, 199, 201, 202, 348, 349, 357, 381"	"Y"	"0.00010247199023237653"	2	"24, 348"	"Y"	"2.0254788105544518e-08"	6	"24, 26, 92, 199, 200, 348"	"Y"	"3.4608373136746415e-06"	5	"24, 26, 92, 199, 348"	"Y"	"1.105735315956251e-06"	5	"24, 26, 92, 199, 348"	"PRIM2_sequences_filtered_longestORFs_mafft_prank"	"PRIM2"	620	11	"0.270987796562"	"0.247"	"N"	0.0887	13	"83, 88, 97, 111, 145, 146, 148, 171, 228, 259, 294, 379, 526"	"N"	"0.5062462656940934"	0	"na"	"N"	"0.07151864304986696"	0	"na"	"N"	"0.2961171872901758"	0	"na"	"N"	"0.052812889433677984"	0	"na"	""	""	"shared"
"289"	"PRIM2[0-1071]"	"PRIM2_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to1071"	"PRIM2_all[0-1071]"	357	19	"0.438648969072"	"0.412"	"Y"	"0.0001"	9	"21, 23, 24, 27, 89, 186, 190, 199, 201"	"Y"	"3.961978604835688e-06"	9	"24, 25, 26, 27, 92, 196, 199, 200, 203"	"Y"	"1.4499165311711042e-11"	9	"24, 25, 26, 27, 92, 196, 199, 200, 203"	"Y"	"0.000367054580595152"	6	"24, 25, 26, 92, 199, 200"	"Y"	"1.4798274083115424e-05"	6	"24, 25, 26, 92, 199, 200"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"290"	"PRIM2[1070-1902]"	"PRIM2_sequences_filtered_longestORFs_mafft_mincov_prank_frag1070to1902"	"PRIM2_all[1070-1902]"	277	19	"0.203768429546"	"0.182"	"N"	"1.0000"	1	"24"	"N"	"0.9999994491806017"	0	"na"	"N"	"0.9970125900762447"	0	"na"	"N"	"0.8057353018733815"	0	"na"	"N"	"0.41979029080804486"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"291"	"PRKACA"	"PRKACA_sequences_filtered_longestORFs_D365gp2_prank"	"PRKACA_365-2"	501	18	"0.039710780541"	"0.052"	"N"	"0.2569"	1	"499"	"N"	"0.9999991376127207"	0	"na"	"N"	"0.13572725067863908"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.18050442252244114"	0	"na"	"PRKACA_sequences_filtered_longestORFs_mafft_prank_part2_prank"	"PRKACA_part2"	435	12	"0.032086701525"	"0.027"	"Y"	0	1	"64"	"N"	"0.9999995230988361"	0	"na"	"N"	"0.24706495671427373"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998336257"	0	"na"	""	""	"shared"
"292"	"PRKACB"	"PRKACA_sequences_filtered_longestORFs_D283gp1_prank"	"PRKACA_283-1"	380	9	"0.295887194535"	"0.258"	"Y"	"0.0000"	1	"15"	"Y"	"0.019981562557437375"	4	"22, 23, 54, 379"	"Y"	"0.0023981082477840883"	4	"22, 23, 54, 379"	"Y"	"9.756419366933184e-05"	3	"15, 22, 23"	"Y"	"9.746667824150497e-05"	5	"15, 22, 23, 54, 379"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"293"	"PRKACG"	"PRKACA_sequences_filtered_longestORFs_D365gp1_prank"	"PRKACA_365-1"	601	21	"0.714090648286"	"0.331"	"Y"	"0.0117"	13	"73, 122, 127, 128, 148, 280, 295, 332, 334, 340, 383, 472, 484"	"N"	"0.14234804829584616"	0	"na"	"N"	"0.08395250191322272"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5320594754128812"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"294"	"PRKAR2A"	"PRKAR2A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PRKAR2A_all_part1"	984	23	"0.299073519639"	"0.282"	"N"	"1.0000"	4	"201, 598, 833, 845"	"Y"	"0.024791201325934854"	2	"201, 212"	"Y"	"0.002101126869598929"	2	"201, 212"	"Y"	"0.04522976007777733"	0	""	"Y"	"0.003312672544899771"	1	"201"	"PRKAR2A_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"PRKAR2A_rem"	428	12	"0.191067386740"	"0.186"	"N"	0.8393	5	"68, 259, 305, 424, 427"	"N"	"0.718417650460873"	0	"na"	"na"	"na"	0	"na"	"N"	"0.39971639333816755"	0	"na"	"Y"	"0.01412230241016088"	0	""	"yes duplication ok"	""	"shared"
"295"	"PRKAR2B"	"PRKAR2B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PRKAR2B_all_part1"	653	24	"0.158472375125"	"0.155"	"Y"	"0.0156"	3	"248, 472, 473"	"N"	"0.4699461333020021"	0	"na"	"Y"	"0.02022628095991523"	2	"248, 292"	"N"	"0.5163347414967244"	0	"na"	"N"	"0.25132710025408966"	0	"na"	"PRKAR2B_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"PRKAR2B_rem"	445	12	"0.051934715957"	"0.057"	"Y"	0.0023	1	"432"	"N"	"0.9999980988359194"	0	"na"	"N"	"0.11799096386319853"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"296"	"PRRC2B"	"PRRC2B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PRRC2B_all_part1"	3044	23	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"PRRC2B_sequences_filtered_longestORFs_mafft_prank"	"PRRC2B"	2626	9	"0.173459583148"	"0.158"	"Y"	0.0145	0	"na"	"N"	"0.9999989880530511"	0	"na"	"N"	"0.0791555736912109"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.20638746062598415"	0	"na"	""	""	"shared"
"297"	"PSMD8"	"PSMD8_sequences_filtered_longestORFs_mafft_mincov_prank"	"PSMD8_all"	501	24	"0.141291057576"	"0.092"	"N"	"0.0615"	2	"88, 411"	"N"	"0.9943178708245272"	0	"na"	"N"	"0.13875385381717611"	0	"na"	"N"	"0.9212719586960403"	0	"na"	"Y"	"0.005102625845940538"	0	""	"PSMD8_sequences_filtered_longestORFs_mafft_prank"	"PSMD8"	366	12	"0.111408772558"	"0.081"	"Y"	0	5	"25, 43, 58, 64, 130"	"N"	"0.9616347107394698"	0	"na"	"Y"	"5.771337692709617e-05"	39	"3, 6, 8, 9, 10, 23, 24, 25, 26, 28, 29, 35, 36, 37, 38, 43, 50, 55, 56, 57, 58, 60, 65, 66, 68, 77, 80, 82, 83, 84, 88, 92, 93, 96, 98, 117, 130, 131, 190"	"N"	"0.2687429318443122"	0	"na"	"N"	"0.8807336725971986"	0	"na"	""	""	"shared"
"298"	"PTBP2"	"PTBP2_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"PTBP2_all_part1"	871	22	"0.007644042056"	"0.015"	"Y"	"0.0100"	0	"na"	"N"	"0.9999999998981366"	0	"na"	"N"	"0.9999957093679047"	0	"na"	"Y"	"0.0023414146055088974"	0	""	"Y"	"0.000234512890837538"	0	""	"PTBP2_sequences_filtered_longestORFs_mafft_prank_part1_prank"	"PTBP2_part1"	702	12	"0.006126637877"	"0.007"	"N"	1	0	"na"	"N"	"0.9999999988476702"	0	"na"	"N"	"0.07994692970857444"	0	"na"	"N"	"0.7482635675785925"	0	"na"	"N"	"0.7475156780179659"	0	"na"	"Yes TB"	""	"shared"
"299"	"PTGES2"	"PTGES2_sequences_filtered_longestORFs_mafft_mincov_prank"	"PTGES2_all"	734	21	"0.099052284958"	"0.091"	"Y"	"0.0000"	10	"223, 226, 243, 299, 351, 370, 486, 488, 610, 719"	"N"	"0.9999998492021518"	0	"na"	"N"	"0.19146004921817086"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.478069098216242"	0	"na"	"PTGES2_sequences_filtered_longestORFs_mafft_prank"	"PTGES2"	690	12	"0.055491753823"	"0.091"	"Y"	0	1	"70"	"N"	"0.9999999546357695"	0	"na"	"Y"	"0.004400481161938919"	3	"114, 202, 411"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"Recombination: Triggered by Nter variation before the M start. Between and within species. The Frag1 aln has no sense to be made because there is no common history within that aln in bats (and it is expected to crash in the PS because no common site with PRANK here).
- PS: Yes frag2 should be under PS. Aln is afftected by lots and lots of structural variants within species. I made a handcurated one with only one ID per species and we can keep that in mind if needed for later analyses.
"	""	"shared"
"300"	"PTGES2[0-1587]"	"PTGES2_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to1587"	"PTGES2_all[0-1587]"	529	21	"0.144359781480"	"0.128"	"Y"	"0.0001"	9	"223, 226, 243, 299, 334, 351, 370, 486, 488"	"N"	"0.9999995699819025"	0	"na"	"N"	"0.8421770140749426"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9960079893440856"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"301"	"PTGES2[0-513]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"PTGES2_sequences_filtered_longestORFs_mafft_prank_frag0to513"	"PTGES2[0-513]"	171	12	"0.007322973305"	"na"	"N"	0.9104	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	""	""	"onlybats"
"302"	"PTGES2[1586-2202]"	"PTGES2_sequences_filtered_longestORFs_mafft_mincov_prank_frag1586to2202"	"PTGES2_all[1586-2202]"	205	21	"0.045843081208"	"0.045"	"N"	"0.0818"	0	"na"	"N"	"0.9999999812130229"	0	"na"	"N"	"0.9429532432625356"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7039837538557017"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"303"	"PTGES2[512-2070]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"PTGES2_sequences_filtered_longestORFs_mafft_prank_frag512to2070"	"PTGES2[512-2070]"	519	12	"0.058843866113"	"0.065"	"N"	1	0	"na"	"N"	"0.9999996668335016"	0	"na"	"Y"	"0.04241071351595013"	2	"31, 240"	"N"	"1.0"	0	"na"	"N"	"0.7131952878984691"	0	"na"	""	""	"onlybats"
"304"	"PUSL1"	"PUSL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"PUSL1_all"	2174	20	"0.136296404622"	"0.171"	"N"	"0.9380"	4	"161, 229, 501, 1587"	"N"	"0.9999998648163546"	0	"na"	"N"	"0.8749368182311382"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.00038279919550335127"	1	"1587"	"PUSL1_sequences_filtered_longestORFs_mafft_prank"	"PUSL1"	733	11	"0.159830842553"	"0.171"	"Y"	0.0015	7	"127, 462, 495, 496, 515, 585, 588"	"N"	"0.9999986238163193"	0	"na"	"N"	"0.9694927663741583"	0	"na"	"Y"	"0.00012316323113359992"	0	""	"Y"	"6.000996057124083e-05"	0	""	"Most of the signal comes from the Cter that has lots and lots of variability and does not allow for a good aln."	""	"shared"
"305"	"PVR"	"PVR_sequences_filtered_longestORFs_mafft_mincov_prank"	"PVR_all"	1480	23	"0.585837982910"	"0.442"	"Y"	"0.0000"	41	"207, 235, 237, 332, 357, 363, 367, 388, 397, 409, 412, 451, 452, 458, 469, 470, 512, 516, 518, 526, 535, 553, 558, 566, 569, 586, 593, 596, 598, 627, 628, 632, 634, 644, 647, 658, 673, 699, 707, 711, 1158"	"Y"	"2.3760715522747607e-07"	2	"1129, 1131"	"Y"	"8.657276700697942e-09"	4	"330, 1129, 1131, 1166"	"Y"	"3.5532082577431795e-10"	3	"1129, 1131, 1166"	"Y"	"2.135661414900621e-15"	4	"1129, 1131, 1166, 1285"	"PVR_sequences_filtered_longestORFs_mafft_prank"	"PVR"	1556	9	"0.386585296754"	"0.326"	"Y"	0	33	"96, 105, 203, 204, 232, 236, 246, 248, 304, 305, 346, 350, 357, 386, 423, 430, 434, 439, 447, 449, 705, 715, 716, 717, 956, 978, 992, 993, 1006, 1222, 1323, 1361, 1367"	"N"	"0.9999995019953861"	0	"na"	"N"	"0.3687676595580579"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.024649467035636845"	0	""	""	""	"shared"
"306"	"QSOX2"	"QSOX2_sequences_filtered_longestORFs_mafft_mincov_prank"	"QSOX2_all"	1379	24	"0.198021545110"	"0.196"	"Y"	"0.0014"	13	"619, 621, 660, 859, 867, 966, 971, 975, 1102, 1239, 1262, 1315, 1322"	"N"	"0.9999991493690666"	0	"na"	"N"	"0.9999947352000511"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.05059006833084182"	0	"na"	"QSOX2_sequences_filtered_longestORFs_mafft_prank"	"QSOX2"	1759	10	"0.174916503505"	"0.185"	"Y"	0	46	"203, 206, 213, 246, 302, 548, 256, 307, 671, 299, 475, 484, 488, 494, 552, 563, 710, 639, 665, 666, 711, 797, 801, 802, 818, 820, 892, 1040, 1041, 1053, 1055, 1059, 1060, 1068, 1089, 1095, 1131, 1136, 1446, 1490, 1507, 1534, 1543, 1557, 1569, 1693"	"N"	"0.9999987586905691"	0	"na"	"N"	"0.46478328146480163"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5694980045294837"	0	"na"	""	""	"shared"
"307"	"RAB10"	"RAB10_sequences_filtered_longestORFs_D179gp1_prank"	"RAB10_179-1"	298	18	"0.183203580220"	"0.167"	"N"	"0.8383"	0	"na"	"N"	"0.9998517557629133"	0	"na"	"N"	"0.9778259585062402"	0	"na"	"N"	"0.9066489037539605"	0	"na"	"N"	"0.887807800762026"	0	"na"	"RAB10_sequences_filtered_longestORFs_D230gp2_prank"	"RAB10_230-2"	252	12	"0.223251295327"	"0.241"	"N"	0.764	0	"na"	"N"	"0.9999995267941113"	0	"na"	"N"	"0.9992598280309021"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"308"	"RAB13"	"RAB10_sequences_filtered_longestORFs_mafft_mincov_prank_part3_prank"	"RAB10_all_part3"	257	21	"0.115300604326"	"0.098"	"N"	"0.9990"	1	"222"	"N"	"0.9999989466556235"	0	"na"	"N"	"0.9999998610867448"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"309"	"RAB14"	"RAB14_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"RAB14_all_part1"	254	24	"0.052888426522"	"0.708"	"Y"	"0.0000"	2	"148, 150"	"N"	"0.40730452460593103"	0	"na"	"Y"	"0.00019146069674151985"	4	"148, 150, 157, 160"	"N"	"0.5096658316912588"	0	"na"	"Y"	"0.015560805410051986"	0	""	"RAB14_sequences_filtered_longestORFs_mafft_prank"	"RAB14"	215	12	"0.001000000000"	"0.000"	"N"	1	0	"na"	"N"	"0.999999999998181"	0	"na"	"N"	"0.9994603195966442"	0	"na"	"N"	"0.9990004998333987"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"shared"
"310"	"RAB15"	"RAB8A_sequences_filtered_longestORFs_D722gp2_prank"	"RAB8A_722-2"	429	17	"0.026261260111"	"0.023"	"N"	"0.0949"	1	"383"	"N"	"0.10152657878312041"	0	"na"	"Y"	"0.002778135074918182"	1	"337"	"N"	"0.14543878537063262"	0	"na"	"Y"	"0.0012162292320567383"	1	"337"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"311"	"RAB18"	"RAB18_sequences_filtered_longestORFs_mafft_mincov_prank"	"RAB18_all"	605	23	"0.162891920389"	"0.203"	"Y"	"0.0000"	4	"55, 56, 254, 287"	"N"	"0.9999999772123831"	0	"na"	"N"	"0.5621434944866635"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.22313016014842982"	0	"na"	"RAB18_sequences_filtered_longestORFs_mafft_prank"	"RAB18"	438	12	"0.080104837126"	"0.155"	"Y"	0	1	"437"	"Y"	"0.018516087317630797"	1	"334"	"Y"	"4.0106557145248056e-07"	2	"191, 334"	"Y"	"0.00013302147188878514"	1	"334"	"Y"	"0.00011335342106918821"	2	"191, 334"	"PS triggered by isoforms (or dupl -would need check) "	""	"shared"
"312"	"RAB18[0-855]"	"RAB18_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to855"	"RAB18_all[0-855]"	285	23	"0.148913294080"	"0.146"	"Y"	"0.0413"	3	"55, 56, 254"	"N"	"0.9999986529614922"	0	"na"	"N"	"0.9998394653912072"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"313"	"RAB18[854-1815]"	"RAB18_sequences_filtered_longestORFs_mafft_mincov_prank_frag854to1815"	"RAB18_all[854-1815]"	320	23	"0.140518668352"	"0.324"	"N"	"0.2284"	1	"2"	"N"	"0.9298952734834036"	0	"na"	"N"	"0.5509808809105197"	0	"na"	"N"	"0.838617983337132"	0	"na"	"N"	"0.9960079893440856"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"314"	"RAB1A"	"RAB1A_sequences_filtered_longestORFs_mafft_mincov_prank"	"RAB1A_all"	506	23	"0.071955603138"	"0.068"	"Y"	"0.0002"	1	"258"	"N"	"0.6733332828164793"	0	"na"	"Y"	"0.022835370766341775"	1	"7"	"N"	"1.0"	0	"na"	"Y"	"0.0015884445690762155"	1	"7"	"RAB1A_sequences_filtered_longestORFs_mafft_prank"	"RAB1A"	248	12	"0.008701779692"	"0.013"	"N"	1	0	"na"	"N"	"0.9999991876894572"	0	"na"	"N"	"0.9965697068625546"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"315"	"RAB2A"	"RAB2A_sequences_filtered_longestORFs_D450gp2_prank"	"RAB2A_450-2"	430	23	"0.049894825996"	"0.060"	"Y"	"0.0246"	0	"na"	"N"	"0.9999999998710791"	0	"na"	"N"	"0.9898001480708969"	0	"na"	"Y"	"0.00195767056459931"	0	""	"Y"	"0.0015461303778478448"	0	""	"RAB2A_sequences_filtered_longestORFs_D110gp1_prank"	"RAB2A_110-1"	244	12	"0.010122299972"	"0.009"	"N"	1	0	"na"	"N"	"0.9999999970061708"	0	"na"	"N"	"0.9999900238903716"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"316"	"RAB2B"	"RAB2A_sequences_filtered_longestORFs_D450gp1_prank"	"RAB2A_450-1"	460	24	"0.051668327345"	"0.042"	"Y"	"0.0008"	2	"325, 446"	"N"	"0.99999983827412"	0	"na"	"Y"	"0.03773270510465456"	1	"448"	"N"	"1.0"	0	"na"	"Y"	"0.010889023668554645"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"317"	"RAB5A"	"RAB5C_sequences_filtered_longestORFs_D484gp2_prank"	"RAB5C_484-2"	236	17	"0.153457939096"	"0.137"	"Y"	"0.0010"	2	"72, 100"	"N"	"0.999998434382494"	0	"na"	"N"	"0.9999999942087925"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"318"	"RAB5B"	"RAB5C_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"RAB5C_rem"	312	24	"0.130422140459"	"0.122"	"Y"	"0.0016"	1	"280"	"N"	"0.9999991583232617"	0	"na"	"N"	"0.05847250401162709"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9811793622428007"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"319"	"RAB5C"	"RAB5C_sequences_filtered_longestORFs_D189gp2_prank"	"RAB5C_189-2"	414	16	"0.029945684662"	"0.037"	"Y"	"0.0061"	1	"122"	"N"	"0.4176935942643851"	0	"na"	"Y"	"0.02946882819084406"	1	"122"	"N"	"0.20576922605988013"	0	"na"	"N"	"0.050488989306910946"	0	"na"	"RAB5C_sequences_filtered_longestORFs_D182gp1_prank"	"RAB5C_182-1"	259	12	"0.044332860160"	"0.047"	"N"	0.7699	1	"142"	"N"	"0.9999998383773476"	0	"na"	"N"	"0.93761480231155"	0	"na"	"N"	"0.2317722663433577"	0	"na"	"N"	"0.838617983337132"	0	"na"	""	""	"shared"
"320"	"RAB7A"	"RAB7A_sequences_filtered_longestORFs_mafft_mincov_prank"	"RAB7A_all"	454	24	"0.044385850106"	"0.061"	"Y"	"0.0010"	2	"267, 353"	"N"	"0.9999991343710571"	0	"na"	"N"	"0.9996041823454711"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.15198096442869868"	0	"na"	"RAB7A_sequences_filtered_longestORFs_mafft_prank"	"RAB7A"	331	12	"0.006214970371"	"0.016"	"N"	1	0	"na"	"N"	"0.9999985599914817"	0	"na"	"N"	"0.9996263598542194"	0	"na"	"N"	"0.9990004998336257"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"321"	"RAB8A"	"RAB8A_sequences_filtered_longestORFs_D724gp2_prank"	"RAB8A_724-2"	468	23	"0.022529444092"	"0.022"	"N"	"1.0000"	0	"na"	"N"	"0.9999994011056489"	0	"na"	"N"	"0.5659519017090746"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"RAB8A_sequences_filtered_longestORFs_D247gp2_prank"	"RAB8A_247-2"	390	12	"0.053497369772"	"0.049"	"Y"	0.0129	2	"200, 346"	"N"	"0.9999988784667871"	0	"na"	"N"	"0.9991451123344435"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9990004998336257"	0	"na"	""	""	"shared"
"322"	"RAB8B"	"RAB10_sequences_filtered_longestORFs_D402gp2_prank"	"RAB10_402-2"	314	17	"0.041084503761"	"0.140"	"N"	"0.2555"	0	"na"	"N"	"0.6988066611266873"	0	"na"	"N"	"0.21409131909397736"	0	"na"	"Y"	"0.0008682768001134115"	1	"251"	"Y"	"0.0008443022595936754"	2	"251, 312"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"323"	"RAE1"	"RAE1_sequences_filtered_longestORFs_mafft_mincov_prank"	"RAE1_all"	956	24	"0.018212170402"	"0.020"	"Y"	"0.0314"	0	"na"	"N"	"0.9999999947176548"	0	"na"	"N"	"0.7952226447680236"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"RAE1_sequences_filtered_longestORFs_mafft_prank"	"RAE1"	476	12	"0.011550421850"	"0.012"	"N"	0.5495	0	"na"	"N"	"0.9999999992505764"	0	"na"	"Y"	"0.009703953190307929"	1	"84"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"324"	"RALA"	"RALA_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"RALA_all_part2"	215	25	"0.096781334415"	"0.095"	"N"	"1.0000"	1	"17"	"N"	"0.9999998606133528"	0	"na"	"N"	"0.9999948267631796"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9811793622428007"	0	"na"	"RALA_sequences_filtered_longestORFs_D112gp1_prank"	"RALA_112-1"	206	12	"0.003695573472"	"0.004"	"N"	0.7222	0	"na"	"N"	"0.9999999962080892"	0	"na"	"N"	"0.9999994631977265"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	"yes dupl TB"	""	"shared"
"325"	"RALB"	"RALA_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"RALA_all_part1"	396	24	"0.038919723022"	"0.041"	"N"	"1.0000"	0	"na"	"N"	"0.999999947522157"	0	"na"	"N"	"0.9999676040610934"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9990004998331715"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"326"	"RAP1GDS1"	"RAP1GDS1_sequences_filtered_longestORFs_mafft_mincov_prank"	"RAP1GDS1_all"	1157	24	"0.182272268296"	"0.166"	"Y"	"0.0000"	6	"550, 653, 798, 1055, 1074, 1081"	"Y"	"9.75681486532579e-68"	1	"107"	"Y"	"1.9880263266176278e-79"	1	"107"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"RAP1GDS1_sequences_filtered_longestORFs_mafft_prank"	"RAP1GDS1"	790	12	"0.127207844325"	"0.115"	"Y"	0	0	"na"	"Y"	"5.872399224899566e-29"	1	"2"	"Y"	"2.611186477612738e-36"	1	"2"	"Y"	"1.5055192914142404e-31"	1	"2"	"Y"	"5.2137953716818936e-33"	2	"2, 461"	"NO PS. Only triggered by M/A at codon 2."	""	"shared"
"327"	"RBM28"	"RBM28_sequences_filtered_longestORFs_mafft_mincov_prank"	"RBM28_all"	1042	22	"0.328426149580"	"0.311"	"N"	"0.4597"	13	"72, 142, 151, 293, 306, 314, 383, 683, 715, 758, 781, 791, 996"	"N"	"0.9999993242392985"	0	"na"	"N"	"0.8502052545444388"	0	"na"	"N"	"0.173600256364976"	0	"na"	"N"	"0.11158150149347275"	0	"na"	"RBM28_sequences_filtered_longestORFs_mafft_prank"	"RBM28"	1044	12	"0.273591811038"	"0.249"	"N"	0.0582	6	"102, 266, 338, 367, 720, 901"	"N"	"0.999998611995633"	0	"na"	"N"	"0.09829807686258053"	0	"na"	"Y"	"0.03597251875340349"	1	"720"	"Y"	"0.006207481629437576"	1	"720"	"yes. Good aln by Prank. "	""	"shared"
"328"	"RBM41"	"RBM41_sequences_filtered_longestORFs_mafft_mincov_prank"	"RBM41_all"	1223	24	"0.312052480947"	"0.340"	"Y"	"0.0008"	8	"37, 167, 201, 874, 879, 880, 1007, 1217"	"N"	"0.2109063097851672"	0	"na"	"N"	"0.08505208405629817"	0	"na"	"N"	"0.059725273885798714"	0	"na"	"Y"	"0.00017390524083438558"	0	""	"RBM41_sequences_filtered_longestORFs_mafft_prank"	"RBM41"	673	12	"0.223739767189"	"0.227"	"N"	0.7329	2	"602, 608"	"N"	"0.9999970189945865"	0	"na"	"N"	"0.9997120617250892"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"329"	"RBX1"	"RBX1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"RBX1_all_part2"	567	24	"0.119128948301"	"0.152"	"Y"	"0.0209"	0	"na"	"N"	"0.9999997240120518"	0	"na"	"N"	"0.9998308519294604"	0	"na"	"Y"	"0.00825447336109025"	1	"450"	"Y"	"0.0003245730277967795"	2	"423, 450"	"RBX1_sequences_filtered_longestORFs_mafft_prank"	"RBX1"	148	12	"0.262676108294"	"0.243"	"N"	0.2864	4	"17, 59, 66, 129"	"N"	"0.9999998085004519"	0	"na"	"N"	"0.9997255824184248"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"330"	"RDX"	"RDX_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"RDX_all_part1"	2586	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"RDX_bat_select_mafft_prank"	"RDX"	677	11	"0.0708302878717671"	"0.065"	"Y"	0.0012	3	"2, 348, 608"	"N"	"0.999998452843843"	0	"na"	"Y"	"0.00870082277450124"	2	"348, 601"	"N"	"1.0"	0	"na"	"N"	"0.9464851479532084"	0	"na"	""	""	"shared"
"331"	"REEP5"	"REEP5_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"REEP5_all_part1"	1006	24	"0.086498435715"	"0.107"	"N"	"1.0000"	2	"866, 877"	"N"	"0.9999991875705408"	0	"na"	"N"	"0.7813142126809386"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.696978998466959"	0	"na"	"REEP5_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"REEP5_rem"	284	7	"0.309153558643"	"0.255"	"N"	0.9701	3	"79, 81, 96"	"N"	"0.9999999417607358"	0	"na"	"N"	"0.86557876645096"	0	"na"	"N"	"0.7174873228543663"	0	"na"	"N"	"0.3937653915324635"	0	"na"	""	""	"shared"
"332"	"REEP6"	"REEP5_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"REEP5_all_part2"	580	16	"1.007695000550"	"1.111"	"Y"	"0.0001"	12	"48, 62, 73, 109, 222, 401, 416, 428, 484, 491, 496, 555"	"Y"	"0.0004223018320237546"	1	"222"	"Y"	"0.002160428267496892"	0	""	"Y"	"0.00033985211189276206"	1	"222"	"Y"	"0.00032198680226961615"	3	"132, 222, 416"	"REEP6_LA_bat_select_mafft_prank"	"REEP6"	382	10	"0.295176226245928"	"0.237"	"N"	0.6966	1	"378"	"N"	"0.675870221654513"	0	"na"	"N"	"0.198620091514709"	0	"na"	"N"	"0.6616622828278411"	0	"na"	"N"	"0.31505753690349364"	0	"na"	""	""	"shared"
"333"	"REEP6_like"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"REEP6_LB_bat_select_mafft_prank"	"REEP6"	810	6	"0.938279690659992"	"0.952"	"Y"	0	11	"377, 380, 492, 522, 526, 576, 589, 590, 599, 618, 793"	"N"	"0.117125879489168"	0	"na"	"Y"	"0.0470838342609061"	0	""	"Y"	"0.01900601064703638"	0	""	"Y"	"0.014610716685120028"	0	""	""	""	"onlybats"
"334"	"REEP6_old"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"REEP6_sequences_filtered_longestORFs_D210gp1_prank"	"REEP6_210-1"	1253	12	"0.211580967901"	"0.428"	"Y"	0.0069	13	"256, 398, 835, 913, 953, 1031, 1037, 1044, 1050, 1061, 1172, 1231, 1236"	"N"	"0.9999998989028478"	0	"na"	"N"	"0.8292887769349311"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.054748790601554014"	0	"na"	"This is a mes. Further duplication"	"REEP6. Made two aln. One A and one B. Correspond to two paralogues. One being more closely to REEP5"	"onlybats"
"335"	"RETREG3"	"RETREG3_sequences_filtered_longestORFs_mafft_mincov_prank"	"RETREG3_all"	500	24	"0.184997088890"	"0.185"	"Y"	"0.0084"	2	"233, 412"	"N"	"0.9624418484439029"	0	"na"	"N"	"0.3644791055063258"	0	"na"	"N"	"0.8555591903710621"	0	"na"	"N"	"0.2928777478112756"	0	"na"	"RETREG3_sequences_filtered_longestORFs_mafft_prank"	"RETREG3"	567	12	"0.191546856009"	"0.204"	"N"	0.8222	2	"225, 478"	"N"	"0.9999998216717517"	0	"na"	"N"	"0.29974396289270483"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.16880686976312853"	0	"na"	"allows annotation"	""	"shared"
"336"	"RHOA"	"RHOA_sequences_filtered_longestORFs_D615gp1_prank"	"RHOA_615-1"	343	15	"0.137136178182"	"0.137"	"N"	"1.0000"	0	"na"	"N"	"0.999999994000973"	0	"na"	"N"	"0.9999972407217098"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"RHOA_sequences_filtered_longestORFs_D151gp1_prank"	"RHOA_151-1"	200	9	"0.001000000000"	"0.000"	"N"	1	0	"na"	"N"	"0.999999999994543"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9980019986673803"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"shared"
"337"	"RHOB"	"RHOA_sequences_filtered_longestORFs_D356gp1_prank"	"RHOA_356-1"	214	18	"0.001758292167"	"0.003"	"Y"	"0.0147"	0	"na"	"N"	"0.9999993357916924"	0	"na"	"N"	"0.9999983801075747"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"338"	"RHOC"	"RHOA_sequences_filtered_longestORFs_D356gp2_prank"	"RHOA_356-2"	858	21	"0.171364201863"	"0.126"	"Y"	"0.0074"	2	"568, 831"	"N"	"0.9999970788623532"	0	"na"	"N"	"0.9985261531246851"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"339"	"RIPK1"	"RIPK1_sequences_filtered_longestORFs_quickclean_mafft_prank"	"RIPK1"	804	24	"0.43700247549172"	"0.412"	"N"	"0.0863"	20	"55, 95, 103, 277, 348, 377, 404, 565, 574, 581, 584, 586, 613, 617, 667, 690, 695, 707, 725, 797"	"Y"	"0.0460095197916455"	0	""	"Y"	"0.00120342633832725"	1	"797"	"Y"	"0.024551066100545648"	1	"797"	"Y"	"0.0002102948425097665"	1	"797"	"RIPK1_sequences_filtered_longestORFs_mafft_prank"	"RIPK1"	822	12	"0.352982795589"	"0.331"	"Y"	0.0075	15	"16, 127, 230, 276, 281, 288, 372, 402, 482, 484, 490, 633, 638, 697, 821"	"N"	"0.5725600367528054"	0	"na"	"N"	"0.07959362938950036"	0	"na"	"N"	"0.13439124424530172"	0	"na"	"Y"	"0.006402927316412248"	1	"818"	"PS "	""	"shared"
"340"	"RNF41"	"RNF41_sequences_filtered_longestORFs_mafft_mincov_prank"	"RNF41_all"	480	23	"0.003104031507"	"0.003"	"N"	"0.2850"	0	"na"	"N"	"0.9999999999974989"	0	"na"	"N"	"0.9999999403173678"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998336257"	0	"na"	"RNF41_sequences_filtered_longestORFs_mafft_prank"	"RNF41"	317	12	"0.010419376844"	"0.010"	"N"	1	0	"na"	"N"	"0.9999999999888587"	0	"na"	"N"	"0.999977440892537"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"shared"
"341"	"RPL36"	"RPL36_sequences_filtered_longestORFs_mafft_mincov_prank"	"RPL36_all"	628	24	"0.483461312002"	"0.362"	"Y"	"0.0001"	14	"337, 361, 371, 394, 417, 418, 431, 432, 582, 585, 596, 606, 607, 615"	"N"	"0.9999993193635006"	0	"na"	"N"	"0.5593643172171061"	0	"na"	"Y"	"2.728305563944152e-08"	5	"582, 585, 606, 607, 620"	"Y"	"1.8456858262039173e-10"	6	"230, 582, 585, 606, 607, 620"	"RPL36_sequences_filtered_longestORFs_mafft_prank"	"RPL36"	276	12	"0.237378633047"	"0.146"	"N"	1	0	"na"	"N"	"0.9999998049668383"	0	"na"	"N"	"0.3601113013498369"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.01942877625150621"	0	""	""	""	"shared"
"342"	"RRP9"	"RRP9_sequences_filtered_longestORFs_mafft_mincov_prank"	"RRP9_all"	584	24	"0.155682509754"	"0.107"	"N"	"0.6394"	6	"38, 40, 65, 162, 207, 329"	"N"	"0.9999991275330271"	0	"na"	"N"	"0.6244806248771296"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.03568588666049016"	1	"126"	"RRP9_sequences_filtered_longestORFs_mafft_prank"	"RRP9"	566	11	"0.057771262846"	"0.052"	"N"	1	3	"87, 457, 557"	"N"	"0.9999999895417204"	0	"na"	"Y"	"0.006302127209825691"	2	"88, 523"	"N"	"1.0"	0	"na"	"Y"	"0.007335717892413876"	0	""	""	""	"shared"
"343"	"RTN4"	"RTN4_sequences_filtered_longestORFs_mafft_mincov_prank"	"RTN4_all"	8139	25	"0.171867113055"	"0.312"	"Y"	"0.0000"	7	"239, 564, 2805, 5381, 6195, 8068, 8111"	"N"	"0.9999997229961466"	0	"na"	"N"	"0.9999601599127923"	0	"na"	"N"	"0.0713612695564276"	0	"na"	"Y"	"0.04221414181437675"	0	""	"RTN4_sequences_filtered_longestORFs_mafft_prank"	"RTN4"	2805	12	"0.125832250975"	"0.407"	"Y"	0.0174	12	"1855, 1915, 1917, 1948, 1969, 1982, 2231, 2430, 2440, 2508, 2515, 2804"	"N"	"0.9999991902524111"	0	"na"	"N"	"0.998503285710714"	0	"na"	"N"	"0.6281351051895494"	0	"na"	"N"	"0.15945396804603182"	0	"na"	""	""	"shared"
"344"	"SAAL1"	"SAAL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SAAL1_all"	906	24	"0.290676205004"	"0.301"	"Y"	"0.0002"	4	"84, 201, 226, 466"	"N"	"0.20683626125030372"	0	"na"	"Y"	"0.02973495952426878"	6	"79, 366, 466, 552, 556, 700"	"Y"	"0.036443214389920243"	0	""	"Y"	"0.0024713270633736194"	0	""	"SAAL1_sequences_filtered_longestORFs_mafft_prank"	"SAAL1"	507	12	"0.261629641069"	"0.266"	"Y"	0	7	"119, 156, 195, 330, 488, 499, 500"	"N"	"0.2584666678037798"	0	"na"	"N"	"0.06451407067002299"	0	"na"	"N"	"0.09965909171569372"	0	"na"	"N"	"0.349238573021875"	0	"na"	""	""	"shared"
"345"	"SBNO1"	"SBNO1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SBNO1_all"	3019	22	"0.069039630102"	"0.064"	"Y"	"0.0000"	9	"131, 845, 1072, 2514, 2807, 2948, 2949, 2984, 2985"	"N"	"0.9999996739734874"	0	"na"	"Y"	"0.01503334418429866"	1	"2514"	"N"	"0.8105842459708948"	0	"na"	"N"	"1.0"	0	"na"	"SBNO1_sequences_filtered_longestORFs_mafft_prank"	"SBNO1"	1580	12	"0.026378112791"	"0.026"	"Y"	0	1	"1212"	"N"	"0.9999998961866422"	0	"na"	"Y"	"0.0005303875917709041"	3	"252, 856, 862"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"346"	"SCAP"	"SCAP_sequences_filtered_longestORFs_mafft_mincov_prank"	"SCAP_all"	1756	24	"0.103990024565"	"0.082"	"N"	"0.6729"	0	"na"	"N"	"0.9999999590691013"	0	"na"	"Y"	"0.00582198304793135"	1	"1256"	"N"	"1.0"	0	"na"	"Y"	"7.581270092171557e-08"	1	"1256"	"SCAP_sequences_filtered_longestORFs_mafft_prank"	"SCAP"	1286	10	"0.084236433526"	"0.061"	"N"	0.0636	4	"687, 934, 1044, 1074"	"N"	"0.9999995101171698"	0	"na"	"Y"	"0.0033378470176263285"	1	"863"	"N"	"1.0"	0	"na"	"N"	"0.11281567351170993"	0	"na"	""	""	"shared"
"347"	"SCARB1"	"SCARB1_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"SCARB1_all_part2"	1623	24	"0.094947443872"	"0.131"	"Y"	"0.0000"	11	"549, 607, 630, 703, 733, 911, 965, 993, 1432, 1531, 1622"	"N"	"0.9999999983037924"	0	"na"	"N"	"0.42297612986890076"	0	"na"	"Y"	"7.551887340080195e-27"	1	"1531"	"na"	"na"	0	"na"	"SCARB1_sequences_filtered_longestORFs_mafft_prank"	"SCARB1"	763	10	"0.218091439138"	"0.155"	"Y"	0	19	"5, 7, 132, 133, 137, 157, 176, 236, 277, 417, 476, 509, 592, 674, 688, 724, 740, 741, 763"	"N"	"0.9999998503026403"	0	"na"	"N"	"0.4515726499701246"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.0002460440433622239"	1	"763"	"PS. Splicing variants"	""	"shared"
"348"	"SCARB1[0-2004]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SCARB1_sequences_filtered_longestORFs_mafft_prank_frag0to2004"	"SCARB1[0-2004]"	668	10	"0.213907939247"	"0.145"	"Y"	0	12	"5, 7, 132, 133, 137, 157, 176, 236, 273, 277, 417, 509"	"N"	"0.9999999882084013"	0	"na"	"N"	"0.3940874985693054"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.3125471316182796"	0	"na"	"Recombination: Mostly triggered by Cter splicing variants or something like that. So OK that GARD detects that.
- PS: Yes PS on the gene from visual inspection.
"	""	"onlybats"
"349"	"SCARB1[2003-2289]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SCARB1_sequences_filtered_longestORFs_mafft_prank_frag2003to2289"	"SCARB1[2003-2289]"	95	10	"0.135675513373"	"0.337"	"N"	0.2219	2	"6, 73"	"N"	"0.9999999989745731"	0	"na"	"N"	"0.9999819188136163"	0	"na"	"N"	"0.9194312560951741"	0	"na"	"N"	"0.5593387480547172"	0	"na"	"Recombination: Mostly triggered by Cter splicing variants or something like that. So OK that GARD detects that.
- PS: Yes PS on the gene from visual inspection.
"	""	"onlybats"
"350"	"SCCPDH"	"SCCPDH_sequences_filtered_longestORFs_mafft_mincov_prank"	"SCCPDH_all"	717	23	"0.297146699972"	"0.323"	"Y"	"0.0242"	4	"203, 437, 632, 635"	"N"	"0.16718066834449946"	0	"na"	"N"	"0.05798336825737528"	0	"na"	"Y"	"0.03951796106177764"	1	"590"	"Y"	"0.015732919159708345"	1	"590"	"SCCPDH_sequences_filtered_longestORFs_mafft_prank"	"SCCPDH"	654	12	"0.281129406592"	"0.291"	"N"	0.1315	11	"46, 70, 87, 228, 229, 231, 238, 327, 379, 594, 644"	"N"	"0.0747269312417341"	0	"na"	"Y"	"0.005045637026761042"	1	"367"	"Y"	"0.047028569511397056"	0	""	"Y"	"0.0063709925831932045"	1	"367"	"PS ok. Splice variants"	""	"shared"
"351"	"SDF2"	"SDF2_sequences_filtered_longestORFs_mafft_mincov_prank"	"SDF2_all"	364	23	"0.091229165614"	"0.089"	"N"	"0.7862"	0	"na"	"N"	"0.9999997541511068"	0	"na"	"N"	"0.9999998942125841"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"SDF2_bat_select_mafft_prank"	"SDF2"	246	12	"0.082797829312181"	"0.080"	"N"	0.2145	0	"na"	"N"	"0.999999439606811"	0	"na"	"N"	"0.999999993020992"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"352"	"SELENOS"	"SELENOS_sequences_filtered_longestORFs_mafft_mincov_prank"	"SELENOS_all"	367	24	"0.207287174753623"	"0.196"	"Y"	"0"	1	"90"	"N"	"0.999999228305"	0	"na"	"N"	"0.986116909613"	0	"na"	"N"	"1"	0	"na"	"N"	"0.692117181689"	0	"na"	"SELENOS_bat_select_mafft_prank"	"SELENOS"	218	8	"0.1693975661318"	"0.172"	"N"	0.8176	5	"71, 72, 85, 128, 173"	"N"	"0.999999579118228"	0	"na"	"N"	"0.389714156459387"	0	"na"	"N"	"0.9970044955034437"	0	"na"	"N"	"0.2133118712228997"	0	"na"	""	""	"shared"
"353"	"SELENOS[0-927]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SELENOS_sequences_filtered_longestORFs_mafft_prank_frag0to927"	"SELENOS[0-927]"	309	11	"0.213235744659"	"0.250"	"Y"	0.0085	3	"126, 148, 154"	"N"	"0.3022734485269354"	0	"na"	"N"	"0.1168296305173564"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.24268280925769264"	0	"na"	"Recomb triggered by aln with lots of indels"	""	"onlybats"
"354"	"SELENOS[926-1137]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SELENOS_sequences_filtered_longestORFs_mafft_prank_frag926to1137"	"SELENOS[926-1137]"	70	11	"0.233147569842"	"0.246"	"N"	1	0	"na"	"N"	"0.9999999153342323"	0	"na"	"N"	"0.9999906640992244"	0	"na"	"N"	"0.9694755730759651"	0	"na"	"N"	"0.3348743138811512"	0	"na"	""	""	"onlybats"
"355"	"SEPSECS"	"SEPSECS_sequences_filtered_longestORFs_mafft_mincov_prank"	"SEPSECS_all"	1204	24	"0.200383584131"	"0.191"	"Y"	"0.0012"	4	"411, 792, 871, 1131"	"Y"	"0.04699410636855563"	1	"871"	"Y"	"0.000675790377354786"	1	"871"	"Y"	"0.022573017543302893"	0	""	"Y"	"0.002544044860029952"	1	"871"	"SEPSECS_sequences_filtered_longestORFs_mafft_prank"	"SEPSECS"	642	12	"0.207760285718"	"0.221"	"Y"	0.0113	0	"na"	"N"	"0.4067707665111908"	0	"na"	"Y"	"0.00326458340100601"	2	"577, 585"	"N"	"0.4269877306527835"	0	"na"	"N"	"0.0707218996108505"	0	"na"	""	""	"shared"
"356"	"SIGMAR1"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SIGMAR1_sequences_filtered_longestORFs_mafft_prank"	"SIGMAR1"	463	11	"0.063555782622"	"0.062"	"N"	1	0	"na"	"N"	"0.9999998523637823"	0	"na"	"Y"	"0.03935837746698778"	3	"28, 43, 296"	"N"	"1.0"	0	"na"	"N"	"0.3163202908753499"	0	"na"	""	""	"onlybats"
"357"	"SIL1"	"SIL1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SIL1_all"	586	24	"0.187714729747"	"0.164"	"N"	"0.5261"	5	"98, 119, 143, 208, 560"	"N"	"0.9999991549406264"	0	"na"	"N"	"0.2610615228717177"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.5210027286033118"	0	"na"	"SIL1_sequences_filtered_longestORFs_mafft_prank"	"SIL1"	670	12	"0.168133221490"	"0.160"	"Y"	0	5	"212, 241, 273, 568, 647"	"N"	"0.8329986992390037"	0	"na"	"N"	"0.10828949711717219"	0	"na"	"N"	"0.3426656803484229"	0	"na"	"N"	"0.05535435177850455"	0	"na"	""	""	"shared"
"358"	"SIRT5"	"SIRT5_sequences_filtered_longestORFs_mafft_mincov_prank"	"SIRT5_all"	1468	24	"0.258709335100"	"0.258"	"N"	"0.9680"	6	"21, 38, 42, 78, 912, 1095"	"Y"	"0.004669553010602517"	1	"1095"	"Y"	"4.899242027843421e-05"	3	"42, 78, 1095"	"Y"	"0.002159237778258251"	2	"42, 1095"	"Y"	"4.0711497970288204e-05"	3	"42, 78, 1095"	"SIRT5_sequences_filtered_longestORFs_mafft_prank"	"SIRT5"	845	12	"0.237387191711"	"0.279"	"Y"	0.0217	3	"109, 146, 637"	"N"	"0.999997756691088"	0	"na"	"N"	"0.9791150997954938"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"359"	"SLC25A21"	"SLC25A21_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC25A21_all"	574	24	"0.292486365788"	"0.285"	"N"	"1.0000"	1	"394"	"Y"	"0.01860047700992424"	1	"194"	"Y"	"0.004167232064733253"	1	"194"	"Y"	"0.016772745526491814"	1	"194"	"Y"	"0.009931934561606084"	1	"194"	"SLC25A21_sequences_filtered_longestORFs_mafft_prank"	"SLC25A21"	547	12	"0.215093302523"	"0.201"	"N"	1	1	"265"	"N"	"0.9999977171495311"	0	"na"	"N"	"0.40225889818633837"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9694755730760753"	0	"na"	""	""	"shared"
"360"	"SLC27A2"	"SLC27A2_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC27A2_all"	699	24	"0.317116282607"	"0.315"	"N"	"0.7063"	12	"83, 99, 105, 305, 393, 413, 449, 471, 527, 529, 637, 680"	"Y"	"0.0018422547501865886"	1	"305"	"Y"	"4.588381649609601e-05"	3	"305, 306, 527"	"Y"	"0.0012633352896771774"	1	"305"	"Y"	"3.120288498361901e-05"	4	"305, 306, 471, 527"	"SLC27A2_sequences_filtered_longestORFs_mafft_prank"	"SLC27A2"	727	12	"0.385009529186"	"0.376"	"Y"	5e-04	23	"26, 31, 40, 53, 79, 125, 196, 217, 247, 249, 250, 262, 281, 460, 471, 476, 499, 503, 567, 600, 610, 685, 699"	"Y"	"0.00037576903711733885"	1	"125"	"Y"	"6.522716428873516e-07"	20	"31, 40, 125, 201, 236, 247, 249, 250, 251, 255, 281, 335, 372, 460, 499, 503, 538, 567, 583, 619"	"Y"	"8.231147755842365e-05"	1	"125"	"Y"	"5.562767025688191e-07"	3	"40, 125, 249"	"yes PS"	""	"shared"
"361"	"SLC30A6"	"SLC30A6_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC30A6_all"	985	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"SLC30A6_sequences_filtered_longestORFs_mafft_prank"	"SLC30A6"	630	12	"0.095903435060"	"0.098"	"N"	0.5871	1	"137"	"N"	"0.9999993722715014"	0	"na"	"N"	"0.9999999439819491"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"362"	"SLC30A7"	"SLC30A7_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC30A7_all"	545	24	"0.066592670400"	"0.064"	"Y"	"0.0014"	2	"177, 222"	"N"	"0.9999974619068248"	0	"na"	"N"	"0.2984454068419767"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9980019986669264"	0	"na"	"SLC30A7_sequences_filtered_longestORFs_mafft_prank"	"SLC30A7"	571	11	"0.062338889596"	"0.070"	"N"	0.9806	2	"99, 316"	"N"	"0.9642172717055939"	0	"na"	"Y"	"0.002494839297655659"	1	"467"	"N"	"1.0"	0	"na"	"N"	"0.05276010294187835"	0	"na"	""	""	"shared"
"363"	"SLC30A9"	"SLC30A9_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC30A9_all"	755	24	"0.149571338056"	"0.120"	"N"	"0.3725"	6	"32, 68, 75, 357, 401, 555"	"N"	"0.9999974259705072"	0	"na"	"N"	"0.9999999375395439"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9970044955027636"	0	"na"	"SLC30A9_sequences_filtered_longestORFs_mafft_prank"	"SLC30A9"	604	12	"0.194459441780"	"0.172"	"Y"	0.0462	3	"73, 119, 406"	"N"	"0.39689306361734966"	0	"na"	"Y"	"0.0002480848189910309"	10	"33, 55, 63, 100, 102, 125, 267, 325, 406, 439"	"N"	"0.053183876599911716"	0	"na"	"Y"	"0.04084380996513176"	1	"406"	""	""	"shared"
"364"	"SLC44A2"	"SLC44A2_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC44A2_all"	1219	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"SLC44A2_sequences_filtered_longestORFs_mafft_prank"	"SLC44A2"	1264	12	"0.114209694102"	"0.110"	"Y"	0	8	"308, 312, 377, 579, 581, 585, 972, 982"	"Y"	"4.816663466237386e-45"	3	"972, 982, 984"	"Y"	"3.1935157674114988e-59"	3	"972, 982, 984"	"Y"	"4.758968983193939e-65"	3	"308, 972, 982"	"Y"	"5.018372006645229e-60"	3	"308, 972, 982"	"Would consider the FL instead of recomb. PS yes"	""	"shared"
"365"	"SLC44A2[0-2577]"	"SLC44A2_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to2577"	"SLC44A2_all[0-2577]"	859	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"366"	"SLC44A2[0-2820]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SLC44A2_sequences_filtered_longestORFs_mafft_prank_frag0to2820"	"SLC44A2[0-2820]"	940	12	"0.133823203630"	"0.107"	"N"	0.6206	7	"308, 312, 377, 579, 581, 585, 799"	"N"	"0.14406182963374692"	0	"na"	"Y"	"7.702462206985215e-07"	5	"308, 377, 577, 579, 585"	"Y"	"0.008463436349092706"	0	""	"Y"	"0.0009312339717154412"	1	"308"	"Recomb aln"	""	"onlybats"
"367"	"SLC44A2[2576-3657]"	"SLC44A2_sequences_filtered_longestORFs_mafft_mincov_prank_frag2576to3657"	"SLC44A2_all[2576-3657]"	360	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"368"	"SLC44A2[2819-3792]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"SLC44A2_sequences_filtered_longestORFs_mafft_prank_frag2819to3792"	"SLC44A2[2819-3792]"	324	12	"0.056657504384"	"0.063"	"Y"	0.0377	1	"32"	"N"	"0.9999999997122586"	0	"na"	"Y"	"0.003086369162383884"	4	"7, 11, 32, 42"	"N"	"1.0"	0	"na"	"N"	"0.9380049995306561"	0	"na"	""	""	"onlybats"
"369"	"SLC9A3R1"	"SLC9A3R1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLC9A3R1_all"	448	23	"0.178234732419"	"0.101"	"N"	"0.7234"	4	"64, 181, 191, 365"	"N"	"0.9999993284375231"	0	"na"	"N"	"0.9972514474835665"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"SLC9A3R1_sequences_filtered_longestORFs_mafft_prank"	"SLC9A3R1"	374	12	"0.130757231892"	"0.099"	"Y"	0	6	"119, 135, 136, 181, 282, 374"	"N"	"0.9999993029603202"	0	"na"	"Y"	"0.010308287959785774"	1	"282"	"N"	"1.0"	0	"na"	"Y"	"0.004566537590817452"	1	"282"	""	""	"shared"
"370"	"SLU7"	"SLU7_sequences_filtered_longestORFs_mafft_mincov_prank"	"SLU7_all"	658	24	"0.078443951323"	"0.069"	"N"	"0.9364"	2	"393, 576"	"N"	"0.4957027238701016"	0	"na"	"Y"	"1.6099547138282536e-05"	2	"66, 626"	"N"	"0.056812437906525494"	0	"na"	"Y"	"0.0008884785966213045"	2	"66, 626"	"SLU7_sequences_filtered_longestORFs_mafft_prank"	"SLU7"	629	12	"0.085159487610"	"0.073"	"N"	1	1	"136"	"N"	"0.9999985890654847"	0	"na"	"Y"	"5.791404197879968e-07"	23	"45, 61, 136, 140, 144, 158, 188, 196, 201, 491, 493, 505, 511, 513, 515, 516, 521, 530, 538, 564, 587, 597, 600"	"N"	"1.0"	0	"na"	"N"	"0.7046880897184571"	0	"na"	""	""	"shared"
"371"	"SMOC1"	"SMOC1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SMOC1_all"	1158	24	"0.098002371610"	"0.087"	"Y"	"0.0000"	2	"150, 1135"	"N"	"0.7558380802197857"	0	"na"	"Y"	"0.00012900450325755493"	5	"148, 150, 340, 753, 989"	"N"	"0.8411376148448129"	0	"na"	"N"	"0.06815300690157228"	0	"na"	"SMOC1_sequences_filtered_longestORFs_mafft_prank"	"SMOC1"	700	12	"0.053224388859"	"0.055"	"N"	1	0	"na"	"N"	"0.9999999988494892"	0	"na"	"N"	"0.12892934950160578"	0	"na"	"N"	"0.9801986733063274"	0	"na"	"N"	"0.522045776761206"	0	"na"	""	""	"shared"
"372"	"SNIP1"	"SNIP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"SNIP1_all"	638	24	"0.173217897527"	"0.170"	"N"	"0.9336"	9	"158, 193, 374, 383, 416, 423, 444, 462, 606"	"N"	"0.999997989455753"	0	"na"	"N"	"0.9999105327517296"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9579113900673513"	0	"na"	"SNIP1_sequences_filtered_longestORFs_mafft_prank"	"SNIP1"	430	12	"0.120126641213"	"0.118"	"N"	0.6703	1	"167"	"N"	"0.9999999406377373"	0	"na"	"N"	"0.5714013295616718"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.489681548585542"	0	"na"	""	""	"shared"
"373"	"SPART"	"SPART_sequences_filtered_longestORFs_mafft_mincov_prank"	"SPART_all"	704	24	"0.127242185779"	"0.129"	"N"	"1.0000"	4	"161, 203, 373, 395"	"N"	"0.999997824901221"	0	"na"	"N"	"0.770163666199085"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.44574867266496354"	0	"na"	"SPART_sequences_filtered_longestORFs_mafft_prank"	"SPART"	817	12	"0.134754866524"	"0.134"	"N"	0.5048	9	"2, 66, 167, 363, 383, 599, 664, 728, 767"	"N"	"0.9999987601675867"	0	"na"	"Y"	"0.0042226296605877315"	4	"122, 383, 728, 767"	"N"	"1.0"	0	"na"	"N"	"0.9930244429327221"	0	"na"	""	""	"shared"
"374"	"SRP19"	"SRP19_sequences_filtered_longestORFs_mafft_mincov_prank"	"SRP19_all"	997	24	"0.246470105804"	"0.356"	"Y"	"0.0000"	9	"219, 232, 433, 435, 452, 490, 493, 498, 557"	"N"	"0.9999993984813036"	0	"na"	"N"	"0.8240632557492455"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.20351816809027615"	0	"na"	"SRP19_sequences_filtered_longestORFs_mafft_prank"	"SRP19"	382	11	"0.304060283095"	"0.309"	"N"	1	4	"128, 133, 235, 312"	"N"	"0.9999993469480019"	0	"na"	"N"	"0.7188032909860891"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6262535236576515"	0	"na"	""	""	"shared"
"375"	"SRP54"	"SRP54_sequences_filtered_longestORFs_mafft_mincov_prank"	"SRP54_all"	734	24	"0.004569972829"	"0.004"	"N"	"0.4180"	0	"na"	"N"	"0.9999999999345164"	0	"na"	"N"	"0.9999985695186524"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.9801986733067731"	0	"na"	"SRP54_sequences_filtered_longestORFs_mafft_prank"	"SRP54"	514	12	"0.001692026331"	"0.002"	"N"	1	0	"na"	"N"	"0.9999999921756171"	0	"na"	"N"	"0.999999957015917"	0	"na"	"N"	"0.9990004998336257"	0	"na"	"N"	"0.9990004998331715"	0	"na"	""	""	"shared"
"376"	"SRP72"	"SRP72_sequences_filtered_longestORFs_mafft_mincov_prank"	"SRP72_all"	1139	23	"0.106194110530"	"0.113"	"Y"	"0.0000"	2	"771, 885"	"N"	"0.9623151432908147"	0	"na"	"N"	"0.096522337886414"	0	"na"	"N"	"0.18768317070702073"	0	"na"	"na"	"na"	0	"na"	"SRP72_sequences_filtered_longestORFs_mafft_prank"	"SRP72"	710	12	"0.068652587280"	"0.067"	"N"	0.9841	0	"na"	"N"	"0.6279854210644857"	0	"na"	"Y"	"5.701113701438703e-05"	5	"225, 394, 477, 569, 658"	"N"	"0.4529380127763897"	0	"na"	"N"	"0.051560469245106696"	0	"na"	""	""	"shared"
"377"	"SRP72[0-2604]"	"SRP72_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to2604"	"SRP72_all[0-2604]"	868	23	"0.102030978458"	"0.105"	"Y"	"0.0460"	2	"439, 771"	"N"	"0.8975304908475987"	0	"na"	"N"	"0.09284676459846575"	0	"na"	"N"	"0.684545612666343"	0	"na"	"N"	"0.18104674887281766"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"378"	"SRP72[2603-3417]"	"SRP72_sequences_filtered_longestORFs_mafft_mincov_prank_frag2603to3417"	"SRP72_all[2603-3417]"	271	23	"0.113708984028"	"0.120"	"N"	"0.7244"	1	"83"	"N"	"0.9999998026778679"	0	"na"	"N"	"0.9585557042047674"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"379"	"STC2"	"STC2_sequences_filtered_longestORFs_mafft_mincov_prank"	"STC2_all"	317	24	"0.163241047367"	"0.131"	"N"	"1.0000"	0	"na"	"N"	"0.9999976125915359"	0	"na"	"N"	"0.9998393244630842"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"STC2_sequences_filtered_longestORFs_mafft_prank"	"STC2"	464	11	"0.136088221159"	"0.132"	"N"	1	3	"383, 396, 402"	"N"	"0.9999998138109905"	0	"na"	"N"	"0.9999950043472564"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9920319148367972"	0	"na"	""	""	"shared"
"380"	"STOM"	"STOM_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"STOM_all_part1"	600	24	"0.215952729448"	"0.216"	"Y"	"0.0000"	6	"26, 31, 122, 363, 365, 534"	"N"	"0.2333523733982205"	0	"na"	"Y"	"0.006072382696255782"	2	"26, 93"	"N"	"0.15107180883632135"	0	"na"	"Y"	"0.0034790361219914244"	2	"26, 93"	"STOM_sequences_filtered_longestORFs_mafft_prank"	"STOM"	311	12	"0.174826037559"	"0.182"	"N"	0.1021	5	"8, 15, 48, 55, 70"	"N"	"0.6102022672127836"	0	"na"	"Y"	"7.793291706831177e-06"	10	"7, 8, 17, 47, 50, 62, 70, 83, 202, 311"	"N"	"0.657704195267903"	0	"na"	"N"	"0.06959935353327155"	0	"na"	""	""	"shared"
"381"	"STOM[0-1047]"	"STOM_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag0to1047"	"STOM_all_part1[0-1047]"	349	24	"0.245512170863"	"0.241"	"Y"	"0.0020"	3	"26, 31, 122"	"Y"	"0.04075295484138041"	1	"26"	"Y"	"0.003341261220344155"	2	"26, 93"	"Y"	"0.008826471039726565"	1	"26"	"Y"	"0.0009692383510549249"	2	"26, 93"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"382"	"STOM[1046-1800]"	"STOM_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank_frag1046to1800"	"STOM_all_part1[1046-1800]"	251	24	"0.158930294639"	"0.192"	"Y"	"0.0000"	2	"16, 185"	"N"	"0.9999981145169426"	0	"na"	"N"	"0.8596639527098576"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"383"	"STOML2"	"STOML2_sequences_filtered_longestORFs_mafft_mincov_prank"	"STOML2_all"	628	24	"0.103458535556"	"0.101"	"N"	"1.0000"	1	"318"	"N"	"0.9999990309684256"	0	"na"	"N"	"0.3767316233019632"	0	"na"	"N"	"0.9464851479532084"	0	"na"	"N"	"0.3109882962958908"	0	"na"	"STOML2_sequences_filtered_longestORFs_mafft_prank"	"STOML2"	356	12	"0.071134004860"	"0.074"	"N"	0.998	1	"21"	"N"	"0.9999989277008645"	0	"na"	"N"	"0.11249452518709809"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"384"	"STOML3"	"STOM_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"STOM_all_part2"	452	13	"0.181905545194"	"0.193"	"N"	"1.0000"	0	"na"	"N"	"0.9999999608205606"	0	"na"	"N"	"0.9999908875294299"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"385"	"SUN2"	"SUN2_sequences_filtered_longestORFs_mafft_mincov_prank"	"SUN2_all"	1705	24	"0.152096786573"	"0.130"	"N"	"0.9854"	14	"784, 1149, 1155, 1166, 1296, 1298, 1310, 1332, 1358, 1363, 1405, 1579, 1594, 1602"	"N"	"0.9999996579918519"	0	"na"	"N"	"0.14204123141551406"	0	"na"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.25233442195527483"	0	"na"	"SUN2_sequences_filtered_longestORFs_mafft_prank"	"SUN2"	950	12	"0.130189836997"	"0.120"	"Y"	0.0148	10	"171, 178, 228, 296, 297, 491, 546, 569, 613, 757"	"N"	"0.9999999386345754"	0	"na"	"N"	"0.10281740478528173"	0	"na"	"N"	"0.6900439415580961"	0	"na"	"Y"	"0.020241911445811743"	0	""	"Quite variable "	""	"shared"
"386"	"TAPT1"	"TAPT1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TAPT1_all"	1355	24	"0.059510938125"	"0.135"	"Y"	"0.0453"	2	"410, 414"	"N"	"0.9999992852647491"	0	"na"	"Y"	"1.311118094882085e-05"	8	"1097, 1240, 1241, 1245, 1259, 1263, 1273, 1276"	"N"	"0.8017166802898278"	0	"na"	"N"	"0.39455371037148623"	0	"na"	"TAPT1_sequences_filtered_longestORFs_mafft_prank"	"TAPT1"	847	12	"0.053518355661"	"0.077"	"N"	1	1	"101"	"N"	"0.9999999048982363"	0	"na"	"Y"	"0.0022989368127261907"	2	"684, 795"	"N"	"1.0"	0	"na"	"N"	"0.7032801219764382"	0	"na"	""	""	"shared"
"387"	"TARS2"	"TARS2_sequences_filtered_longestORFs_mafft_mincov_prank"	"TARS2_all"	1199	22	"0.256722988523"	"0.272"	"Y"	"0.0003"	15	"231, 319, 459, 469, 509, 556, 623, 680, 727, 929, 930, 973, 1020, 1026, 1124"	"N"	"0.9999989787471107"	0	"na"	"N"	"0.6227803328213158"	0	"na"	"N"	"0.9940179640527202"	0	"na"	"N"	"0.5521144043074049"	0	"na"	"TARS2_bat_same_mafft_prank"	"TARS2"	1893	11	"0.134537221746324"	"0.164"	"N"	1	6	"121, 571, 1151, 1732, 1832, 1833"	"N"	"0.999998829519203"	0	"na"	"N"	"0.999999998618478"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.4479829971847956"	0	"na"	""	""	"shared"
"388"	"TBCA"	"TBCA_sequences_filtered_longestORFs_mafft_mincov_prank"	"TBCA_all"	508	24	"0.337281001315"	"0.401"	"Y"	"0.0001"	5	"6, 49, 232, 242, 448"	"N"	"0.9547514305065781"	0	"na"	"N"	"0.3724648352353087"	0	"na"	"N"	"0.2546156820248195"	0	"na"	"N"	"0.08874395194919735"	0	"na"	"TBCA_bat_same_mafft_prank"	"TBCA"	190	12	"0.137521294837412"	"0.242"	"Y"	0	1	"112"	"N"	"0.99999970048434"	0	"na"	"N"	"0.993597058314342"	0	"na"	"Y"	"5.8900579536612135e-09"	3	"2, 3, 4"	"na"	"na"	0	"na"	""	""	"shared"
"389"	"TBK1"	"TBK1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TBK1_all"	1010	24	"0.071557832345"	"0.054"	"Y"	"0.0000"	6	"589, 599, 637, 697, 702, 735"	"N"	"0.9998866560273815"	0	"na"	"Y"	"0.0074795279294670725"	1	"441"	"N"	"1.0"	0	"na"	"N"	"0.2644772612998432"	0	"na"	"TBK1_sequences_filtered_longestORFs_mafft_prank"	"TBK1"	760	12	"0.160775310865"	"0.123"	"Y"	0	4	"283, 289, 635, 682"	"Y"	"0.01649150184328647"	1	"19"	"Y"	"1.5887590517440409e-06"	3	"19, 283, 406"	"Y"	"0.035154593024559"	0	""	"Y"	"1.450771742364061e-07"	3	"19, 283, 406"	"ok for PS. First site only due to alternative start site (splicing)"	""	"shared"
"390"	"TBKBP1"	"TBKBP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TBKBP1_all"	1961	21	"0.085497667869"	"0.061"	"Y"	"0.0000"	7	"210, 1584, 1586, 1592, 1640, 1643, 1932"	"N"	"0.9999992271617233"	0	"na"	"Y"	"0.007205789252335191"	4	"58, 1586, 1643, 1647"	"N"	"0.0626620047421258"	0	"na"	"N"	"0.05698313113194283"	0	"na"	"TBKBP1_sequences_filtered_longestORFs_mafft_prank"	"TBKBP1"	787	12	"0.050225800517"	"0.055"	"N"	0.9686	0	"na"	"N"	"0.9999998864691471"	0	"na"	"N"	"0.9313942790654101"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9970044955027636"	0	"na"	""	""	"shared"
"391"	"TCF12"	"TCF12_sequences_filtered_longestORFs_mafft_mincov_prank"	"TCF12_all"	1784	23	"0.089163951675"	"0.087"	"N"	"1.0000"	1	"1456"	"N"	"0.5717787679723109"	0	"na"	"Y"	"0.0005495687132345552"	2	"939, 1456"	"N"	"0.35879646540608207"	0	"na"	"na"	"na"	0	"na"	"TCF12_sequences_filtered_longestORFs_mafft_prank"	"TCF12"	1743	12	"0.090814965700"	"0.085"	"N"	0.1396	4	"1526, 1611, 1689, 1690"	"N"	"0.999997598744967"	0	"na"	"N"	"0.08447404722561117"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"392"	"THTPA"	"THTPA_sequences_filtered_longestORFs_mafft_mincov_prank"	"THTPA_all"	373	24	"0.443083285519"	"0.477"	"N"	"0.1223"	4	"163, 210, 292, 342"	"N"	"0.9766896697822607"	0	"na"	"N"	"0.9686115036684789"	0	"na"	"N"	"0.4533911773339794"	0	"na"	"N"	"0.2813938470598014"	0	"na"	"THTPA_sequences_filtered_longestORFs_mafft_prank"	"THTPA"	279	12	"0.399843538338"	"0.416"	"N"	1	4	"64, 66, 129, 276"	"N"	"0.9999959784148735"	0	"na"	"N"	"0.9987236270706843"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9870841350203666"	0	"na"	""	""	"shared"
"393"	"TIMM10"	"TIMM10_sequences_filtered_longestORFs_mafft_mincov_prank"	"TIMM10_all"	155	24	"0.144848899100"	"0.092"	"N"	"0.8126"	0	"na"	"N"	"0.9999990566677655"	0	"na"	"N"	"0.9999284525655219"	0	"na"	"N"	"0.1148647419259746"	0	"na"	"N"	"0.6596802704842788"	0	"na"	"TIMM10_sequences_filtered_longestORFs_mafft_prank"	"TIMM10"	156	12	"0.025368776757"	"0.022"	"N"	1	0	"na"	"N"	"0.9999980569046563"	0	"na"	"N"	"0.999396690041851"	0	"na"	"Y"	"0.0017963472167066177"	0	""	"N"	"1.0"	0	"na"	""	""	"shared"
"394"	"TIMM10B"	"TIMM10B_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"TIMM10B_all_part1"	247	24	"0.256599587009"	"0.177"	"N"	"0.8037"	1	"117"	"N"	"0.8704886074406261"	0	"na"	"N"	"0.6434962756108793"	0	"na"	"N"	"0.9920319148370227"	0	"na"	"N"	"0.38558253897972294"	0	"na"	"TIMM10B_sequences_filtered_longestORFs_mafft_prank"	"TIMM10B"	217	12	"0.203079808533"	"0.260"	"N"	1	3	"14, 67, 164"	"N"	"0.9999997065308865"	0	"na"	"N"	"0.9610584460379168"	0	"na"	"N"	"0.9493288668429777"	0	"na"	"N"	"0.3961350858554927"	0	"na"	""	""	"shared"
"395"	"TIMM29"	"TIMM29_sequences_filtered_longestORFs_mafft_mincov_prank"	"TIMM29_all"	403	23	"0.170189955167"	"0.095"	"N"	"0.9804"	5	"93, 99, 282, 350, 364"	"N"	"0.9999998265998479"	0	"na"	"N"	"0.9999930817487553"	0	"na"	"Y"	"8.484710991059769e-09"	0	""	"N"	"0.393371822958025"	0	"na"	"TIMM29_sequences_filtered_longestORFs_mafft_prank"	"TIMM29"	282	12	"0.108850147192"	"0.078"	"N"	0.8387	2	"62, 270"	"N"	"0.9999996952501997"	0	"na"	"N"	"0.9999316309689258"	0	"na"	"Y"	"0.023237219430594515"	0	""	"N"	"1.0"	0	"na"	""	""	"shared"
"396"	"TIMM8B"	"TIMM8B_sequences_filtered_longestORFs_mafft_mincov_prank"	"TIMM8B_all"	207	22	"0.090266411477"	"0.136"	"Y"	"0.0011"	1	"85"	"N"	"0.9999999866154213"	0	"na"	"N"	"0.9955822853216804"	0	"na"	"Y"	"0.019565254802910916"	0	""	"Y"	"0.00012279429512095677"	1	"85"	"TIMM8B_sequences_filtered_longestORFs_mafft_prank"	"TIMM8B"	113	12	"0.034615966404"	"0.039"	"N"	1	0	"na"	"N"	"0.9999999999095053"	0	"na"	"N"	"0.9999998429372122"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"397"	"TIMM9"	"TIMM9_sequences_filtered_longestORFs_mafft_mincov_prank"	"TIMM9_all"	289	21	"0.126085640961"	"0.264"	"N"	"1.0000"	3	"73, 125, 196"	"N"	"0.9999999788851712"	0	"na"	"N"	"0.9566142032001991"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.7385990963704006"	0	"na"	"TIMM9_sequences_filtered_longestORFs_mafft_prank"	"TIMM9"	89	12	"0.136125645835"	"0.107"	"N"	1	0	"na"	"N"	"0.9999998509868075"	0	"na"	"N"	"0.9978432465154056"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998333987"	0	"na"	""	""	"shared"
"398"	"TLE1"	"TLE1_sequences_filtered_longestORFs_mafft_mincov_prank_part5_prank"	"TLE1_all_part5"	2038	24	"na"	"na"	"Y"	"0.0000"	5	"703, 704, 831, 1725, 1865"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"TLE1_sequences_filtered_longestORFs_mafft_prank_part4_prank"	"TLE1_part4"	1349	12	"0.021379127643"	"0.021"	"Y"	0.0096	0	"na"	"N"	"0.999999737427095"	0	"na"	"N"	"0.10001183858193749"	0	"na"	"Y"	"5.373667079033846e-06"	0	""	"na"	"na"	0	"na"	"ok for dupl"	""	"shared"
"399"	"TLE2"	"TLE5_sequences_filtered_longestORFs_D410gp1_prank"	"TLE5_410-1"	1329	16	"0.051338280468"	"0.053"	"Y"	"0.0000"	10	"257, 347, 355, 423, 542, 543, 724, 768, 903, 1086"	"N"	"0.9999999648207456"	0	"na"	"Y"	"0.043485404946759565"	1	"543"	"N"	"0.9166770956319117"	0	"na"	"N"	"0.12319337545336614"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"400"	"TLE2[0-1302]"	"TLE5_sequences_filtered_longestORFs_D410gp1_prank_frag0to1302"	"TLE5_410-1[0-1302]"	434	16	"0.009618009185"	"0.041"	"N"	"1.0000"	0	"na"	"N"	"0.9999997206248672"	0	"na"	"N"	"0.9981692975126539"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6941966508781303"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"401"	"TLE2[1301-3987]"	"TLE5_sequences_filtered_longestORFs_D410gp1_prank_frag1301to3987"	"TLE5_410-1[1301-3987]"	895	16	"0.036078072852"	"0.038"	"Y"	"0.0000"	6	"108, 109, 290, 334, 469, 794"	"N"	"0.9999996774932307"	0	"na"	"Y"	"0.018246076964545485"	1	"109"	"N"	"0.9990004998331715"	0	"na"	"Y"	"0.04993665383897023"	0	""	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"402"	"TLE3"	"TLE3_sequences_filtered_longestORFs_D1242gp2_prank"	"TLE3_1242-2"	5562	25	"na"	"na"	"Y"	"0.0000"	9	"1195, 2212, 3825, 4772, 5086, 5243, 5327, 5363, 5425"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"TLE3_sequences_filtered_longestORFs_D556gp2_prank"	"TLE3_556-2"	1952	12	"0.013531340208"	"0.012"	"N"	1	2	"211, 1011"	"N"	"0.9999999944566298"	0	"na"	"N"	"0.9999999965148163"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	""	""	"shared"
"403"	"TLE4"	"TLE3_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"TLE3_rem"	2462	19	"0.005206466630"	"0.006"	"N"	"1.0000"	0	"na"	"N"	"0.9999994720584738"	0	"na"	"N"	"0.09282869531318969"	0	"na"	"Y"	"0.02643675505926894"	0	""	"na"	"na"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"404"	"TLE5"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"TLE5_sequences_filtered_longestORFs_D98gp1_prank"	"TLE5_98-1"	283	12	"0.002111890609"	"0.002"	"N"	1	0	"na"	"N"	"0.9999999994261088"	0	"na"	"N"	"0.9999997057343968"	0	"na"	"N"	"0.9990004998333987"	0	"na"	"N"	"0.9930244429331737"	0	"na"	""	""	"onlybats"
"405"	"TM2D3"	"TM2D3_sequences_filtered_longestORFs_mafft_mincov_prank"	"TM2D3_all"	693	24	"0.163507807652"	"0.163"	"N"	"0.1993"	2	"22, 408"	"N"	"0.6684045586679997"	0	"na"	"Y"	"3.430580758022897e-05"	10	"3, 4, 7, 12, 13, 22, 335, 345, 399, 408"	"N"	"0.4061632932980087"	0	"na"	"N"	"0.2253726555394879"	0	"na"	"TM2D3_sequences_filtered_longestORFs_mafft_prank"	"TM2D3"	437	12	"0.072524501738"	"0.095"	"N"	1	2	"51, 168"	"N"	"0.9999999844217201"	0	"na"	"N"	"0.4403563462071517"	0	"na"	"Y"	"0.00020489764422076452"	0	""	"N"	"0.4404316545061274"	0	"na"	""	""	"shared"
"406"	"TMED5"	"TMED5_sequences_filtered_longestORFs_mafft_mincov_prank"	"TMED5_all"	828	24	"0.142041245855"	"0.246"	"N"	"1.0000"	0	"na"	"N"	"0.9999896184062906"	0	"na"	"N"	"0.9996814693702539"	0	"na"	"N"	"0.9960079893440856"	0	"na"	"N"	"0.9821610323582721"	0	"na"	"TMED5_sequences_filtered_longestORFs_mafft_prank"	"TMED5"	484	11	"0.215128279257"	"0.216"	"Y"	0.0379	3	"81, 92, 149"	"N"	"0.9809204583363237"	0	"na"	"Y"	"0.016520072309041865"	16	"77, 79, 81, 92, 93, 94, 98, 103, 118, 119, 149, 378, 379, 418, 430, 443"	"N"	"0.7725952321070743"	0	"na"	"N"	"0.6107912690656443"	0	"na"	""	""	"shared"
"407"	"TMEM39B"	"TMEM39B_sequences_filtered_longestORFs_mafft_mincov_prank"	"TMEM39B_all"	1232	24	"0.031066125277"	"0.042"	"Y"	"0.0000"	3	"51, 277, 300"	"N"	"0.999999462436025"	0	"na"	"Y"	"0.0012595106626096717"	2	"302, 512"	"Y"	"4.1185887075334635e-06"	3	"51, 176, 221"	"Y"	"5.997038937209627e-09"	5	"51, 176, 221, 276, 302"	"TMEM39B_bat_same_mafft_prank"	"TMEM39B"	880	12	"0.0272350070390354"	"0.041"	"Y"	0	3	"217, 331, 332"	"N"	"0.999999995285634"	0	"na"	"N"	"0.999708222630975"	0	"na"	"Y"	"1.5181774326767543e-06"	2	"169, 216"	"na"	"na"	0	"na"	""	""	"shared"
"408"	"TMEM97"	"TMEM97_sequences_filtered_longestORFs_mafft_mincov_prank"	"TMEM97_all"	1035	24	"0.167819929316"	"0.322"	"Y"	"0.0000"	8	"392, 458, 796, 808, 873, 881, 882, 1033"	"N"	"0.9999997544607897"	0	"na"	"N"	"0.9999947415289641"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9980019986669264"	0	"na"	"TMEM97_sequences_filtered_longestORFs_mafft_prank"	"TMEM97"	236	12	"0.420879156212"	"0.471"	"N"	0.9586	11	"5, 29, 31, 42, 104, 107, 120, 157, 179, 188, 205"	"N"	"0.7340928477677238"	0	"na"	"N"	"0.34471649535720056"	0	"na"	"N"	"0.31254713161813774"	0	"na"	"N"	"0.12681829056798818"	0	"na"	""	""	"shared"
"409"	"TMPRSS2"	"TMPRSS2_sequences_filtered_longestORFs_mafft_mincov_prank"	"TMPRSS2_all"	835	24	"0.309615659941"	"0.303"	"Y"	"0.0000"	24	"202, 208, 210, 240, 252, 302, 307, 309, 341, 373, 391, 399, 440, 444, 453, 457, 505, 517, 692, 735, 751, 768, 789, 817"	"N"	"0.9999974339840445"	0	"na"	"Y"	"3.4286953818612497e-07"	4	"365, 453, 456, 680"	"Y"	"2.0991039390192704e-06"	4	"365, 453, 456, 680"	"Y"	"2.7365027702967978e-08"	6	"365, 453, 456, 680, 728, 768"	"TMPRSS2_bat_same_mafft_prank"	"TMPRSS2"	1174	12	"0.140290584008726"	"0.145"	"N"	0.9333	12	"630, 644, 649, 688, 775, 888, 921, 1003, 1051, 1055, 1066, 1173"	"N"	"0.999999010422051"	0	"na"	"N"	"0.621882294670985"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.788991288016829"	0	"na"	""	""	"shared"
"410"	"TMPRSS2_cut"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"TMPRSS2_bat_select_cut_mafft_prank"	"TMPRSS2"	574	12	"0.129489038364869"	"0.127"	"N"	0.9358	19	"59, 73, 78, 108, 115, 117, 121, 133, 144, 241, 259, 288, 321, 403, 421, 451, 455, 466, 573"	"N"	"0.999999906049202"	0	"na"	"N"	"0.334893426994811"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.4210515526274131"	0	"na"	""	""	"onlybats"
"411"	"TOMM70"	"TOMM70_sequences_filtered_longestORFs_mafft_mincov_prank"	"TOMM70_all"	641	24	"0.059415639954"	"0.054"	"N"	"1.0000"	0	"na"	"N"	"0.9875869801535943"	0	"na"	"Y"	"0.0343600371989326"	1	"62"	"N"	"0.8162782414252596"	0	"na"	"N"	"1.0"	0	"na"	"TOMM70_sequences_filtered_longestORFs_mafft_prank"	"TOMM70"	723	11	"0.029882210583"	"0.030"	"N"	1	0	"na"	"N"	"0.9999995844483192"	0	"na"	"N"	"0.9999999321098608"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"412"	"TOR1A"	"TOR1A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"TOR1A_all_part1"	507	23	"0.099632009810"	"0.101"	"Y"	"0.0196"	3	"56, 408, 486"	"N"	"0.8947941317286731"	0	"na"	"N"	"0.09775517975045724"	0	"na"	"N"	"0.74081822068192"	0	"na"	"N"	"0.055299025094692394"	0	"na"	"TOR1A_sequences_filtered_longestORFs_duplication_remainingsequences_prank"	"TOR1A_rem"	604	12	"0.066585977696"	"0.080"	"N"	0.5671	2	"121, 365"	"N"	"0.9999999594665504"	0	"na"	"N"	"0.9355750222791034"	0	"na"	"N"	"1.0"	0	"na"	"Y"	"0.02670244886475937"	0	""	"dupl ok"	""	"shared"
"413"	"TOR1AIP1"	"TOR1AIP1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TOR1AIP1_all"	1425	24	"0.577187484977"	"0.581"	"Y"	"0.0005"	27	"144, 184, 187, 237, 239, 385, 409, 430, 457, 731, 734, 838, 848, 853, 857, 980, 1040, 1056, 1058, 1060, 1061, 1077, 1078, 1084, 1086, 1096, 1107"	"Y"	"1.2484315979276648e-11"	1	"1040"	"Y"	"2.502738548107742e-12"	2	"848, 1040"	"Y"	"1.7539158731449243e-10"	3	"848, 1040, 1182"	"Y"	"4.7170863106397096e-14"	5	"838, 848, 1040, 1093, 1182"	"TOR1AIP1_sequences_filtered_longestORFs_mafft_prank"	"TOR1AIP1"	743	12	"0.558329321702"	"0.531"	"Y"	0	0	"na"	"Y"	"0.0018966215330895428"	1	"509"	"Y"	"0.00023452293549997097"	2	"509, 515"	"Y"	"0.00014848895196983343"	2	"509, 515"	"Y"	"7.610360616693669e-06"	4	"317, 501, 509, 515"	"PS yes"	""	"shared"
"414"	"TOR1B"	"TOR1A_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"TOR1A_all_part2"	862	22	"0.145576301068"	"0.143"	"N"	"0.2796"	3	"46, 50, 79"	"N"	"0.9999997955924509"	0	"na"	"N"	"0.25516771425334167"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.28822899305718525"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"415"	"TRIM59"	"TRIM59_sequences_filtered_longestORFs_mafft_mincov_prank"	"TRIM59_all"	2041	23	"0.306210926693"	"0.294"	"Y"	"0.0010"	8	"522, 527, 555, 561, 607, 1946, 1997, 2022"	"N"	"0.22440658792179846"	0	"na"	"Y"	"0.029867764315102553"	2	"522, 562"	"N"	"0.2553806759881334"	0	"na"	"Y"	"0.031335614024921986"	0	""	"TRIM59_sequences_filtered_longestORFs_mafft_prank"	"TRIM59"	439	12	"0.316982231988"	"0.274"	"N"	0.955	4	"239, 256, 354, 380"	"N"	"0.9999949480425412"	0	"na"	"N"	"0.05724083315647518"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.08492387601959336"	0	"na"	""	""	"shared"
"416"	"TRMT1"	"TRMT1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TRMT1_all"	1068	23	"0.221247278753"	"0.201"	"Y"	"0.0002"	0	"na"	"N"	"0.9999999638539527"	0	"na"	"Y"	"0.004488704483443964"	4	"369, 969, 990, 1047"	"N"	"0.7025771933778344"	0	"na"	"Y"	"2.653621909059236e-05"	0	""	"TRMT1_sequences_filtered_longestORFs_mafft_prank"	"TRMT1"	704	12	"0.212290337739"	"0.192"	"Y"	0	12	"2, 3, 24, 37, 54, 253, 254, 289, 324, 529, 652, 686"	"N"	"0.9999996975075649"	0	"na"	"N"	"0.526395175937924"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9920319148372483"	0	"na"	""	""	"shared"
"417"	"TUBGCP2"	"TUBGCP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"TUBGCP2_all"	1664	24	"0.070451478024"	"0.061"	"Y"	"0.0000"	5	"444, 445, 1331, 1463, 1613"	"N"	"0.9999999509855128"	0	"na"	"Y"	"0.00013629384562998488"	2	"238, 1550"	"Y"	"9.844623464290293e-05"	0	""	"Y"	"0.0064608137605138396"	1	"238"	"TUBGCP2_sequences_filtered_longestORFs_mafft_prank"	"TUBGCP2"	1035	12	"0.055037331258"	"0.044"	"N"	0.8328	1	"954"	"N"	"0.9999999146402879"	0	"na"	"N"	"0.9999999871270121"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9910403787728692"	0	"na"	""	""	"shared"
"418"	"TUBGCP3"	"TUBGCP3_sequences_filtered_longestORFs_mafft_mincov_prank"	"TUBGCP3_all"	1850	24	"0.059328763974"	"0.060"	"Y"	"0.0094"	8	"400, 668, 696, 781, 803, 1013, 1453, 1672"	"N"	"0.9999996171337266"	0	"na"	"N"	"0.6866955291166233"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"TUBGCP3_sequences_filtered_longestORFs_mafft_prank"	"TUBGCP3"	1156	12	"0.073030126757"	"0.072"	"N"	1	2	"387, 430"	"N"	"0.33879849700735243"	0	"na"	"Y"	"1.2025913118475392e-07"	3	"387, 464, 490"	"N"	"0.5147880584569597"	0	"na"	"Y"	"0.018949078056685893"	1	"387"	""	""	"shared"
"419"	"TYSND1"	"TYSND1_sequences_filtered_longestORFs_mafft_mincov_prank"	"TYSND1_all"	2653	21	"na"	"na"	"N"	"0.8539"	9	"178, 192, 195, 255, 528, 532, 652, 1640, 2313"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"TYSND1_bat_select_mafft_prank"	"TYSND1"	676	8	"0.21586721789783"	"0.184"	"N"	0.2118	5	"54, 93, 95, 124, 205"	"N"	"0.999998961509475"	0	"na"	"Y"	"0.00164138799933957"	1	"95"	"N"	"1.0"	0	"na"	"Y"	"1.0838402897292556e-06"	2	"95, 317"	""	""	"shared"
"420"	"UBAP2"	"UBAP2_sequences_filtered_longestORFs_mafft_mincov_prank"	"UBAP2_all"	2044	24	"0.314627701475"	"0.319"	"N"	"0.0883"	13	"569, 1183, 1189, 1271, 1390, 1449, 1457, 1584, 1656, 1668, 1673, 1674, 1861"	"Y"	"0.04356681576239805"	0	""	"Y"	"0.00019803234787945596"	2	"570, 1664"	"Y"	"0.010224177708430196"	0	""	"Y"	"6.585863546181317e-05"	0	""	"UBAP2_sequences_filtered_longestORFs_mafft_prank"	"UBAP2"	1504	12	"0.237830734331"	"0.242"	"N"	1	0	"na"	"N"	"0.9999996078168666"	0	"na"	"N"	"0.9998839629323042"	0	"na"	"N"	"0.9980019986687417"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"421"	"UBAP2L"	"UBAP2L_sequences_filtered_longestORFs_mafft_mincov_prank"	"UBAP2L_all"	4315	24	"na"	"na"	"Y"	"0.0000"	4	"113, 249, 484, 876"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"UBAP2L_sequences_filtered_longestORFs_mafft_prank"	"UBAP2L"	3418	12	"na"	"na"	"Y"	0	3	"271, 476, 3110"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"could be cut at nt 5346 to reanalyze the 5-ter. Crashed because aln too long I think"	"UBAP2L. Could not cut in the end. Many slice variants. Decided to keep whole and re-run. If too long, quit"	"shared"
"422"	"UBXN8"	"UBXN8_sequences_filtered_longestORFs_mafft_mincov_prank"	"UBXN8_all"	699	23	"0.372707393059"	"0.357"	"Y"	"0.0023"	8	"318, 405, 446, 473, 505, 509, 513, 627"	"N"	"0.9999984149270688"	0	"na"	"N"	"0.9999874088127017"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9733612415242943"	0	"na"	"UBXN8_sequences_filtered_longestORFs_mafft_prank"	"UBXN8"	305	12	"0.404541986019"	"0.393"	"N"	1	1	"142"	"N"	"0.8595500425717232"	0	"na"	"N"	"0.570834465560978"	0	"na"	"N"	"0.8253068684916764"	0	"na"	"N"	"0.48772673462580574"	0	"na"	""	""	"shared"
"423"	"UGGT2"	"UGGT2_sequences_filtered_longestORFs_mafft_mincov_prank"	"UGGT2_all"	2127	22	"0.368713980825"	"0.315"	"N"	"0.6342"	19	"251, 252, 284, 310, 315, 355, 360, 399, 425, 453, 495, 509, 587, 764, 765, 1026, 1088, 1190, 1559"	"Y"	"0.020000998743095837"	47	"59, 316, 334, 392, 399, 417, 425, 462, 495, 496, 509, 580, 582, 595, 628, 633, 672, 683, 697, 706, 707, 764, 769, 801, 836, 839, 843, 899, 917, 936, 964, 988, 995, 998, 1018, 1044, 1088, 1114, 1190, 1203, 1212, 1230, 1330, 1345, 1348, 1358, 1363"	"Y"	"0.0007007729591462683"	14	"334, 509, 582, 672, 697, 764, 769, 964, 988, 1044, 1114, 1190, 1330, 1345"	"Y"	"0.00892409818605493"	0	""	"Y"	"3.4209745443492555e-05"	3	"697, 1044, 1190"	"UGGT2_sequences_filtered_longestORFs_mafft_prank"	"UGGT2"	1721	12	"0.271849324024"	"0.248"	"Y"	0.015	15	"154, 156, 623, 677, 691, 738, 780, 876, 915, 932, 1051, 1174, 1301, 1329, 1349"	"N"	"0.9999994895407719"	0	"na"	"N"	"0.4009484925650369"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.3686159363035691"	0	"na"	""	""	"shared"
"424"	"UPF1"	"UPF1_sequences_filtered_longestORFs_mafft_mincov_prank"	"UPF1_all"	1740	24	"na"	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"na"	"na"	0	"na"	"UPF1_sequences_filtered_longestORFs_mafft_prank"	"UPF1"	1268	12	"0.005967468791"	"0.004"	"N"	1	0	"na"	"N"	"0.9999999999008651"	0	"na"	"N"	"0.9999900181399214"	0	"na"	"N"	"0.9940179640545284"	0	"na"	"N"	"0.9940179640545284"	0	"na"	""	""	"shared"
"425"	"USP13"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"USP13_sequences_filtered_longestORFs_mafft_prank"	"USP13"	957	12	"0.037174112882"	"0.037"	"N"	1	2	"374, 873"	"N"	"0.9999987827948775"	0	"na"	"Y"	"0.0190013570231371"	2	"586, 706"	"N"	"1.0"	0	"na"	"N"	"0.99900049983408"	0	"na"	""	""	"onlybats"
"426"	"USP54"	"USP54_sequences_filtered_longestORFs_mafft_mincov_prank"	"USP54_all"	2486	24	"0.386068465868"	"0.385"	"N"	"0.6967"	22	"464, 1198, 1478, 1525, 1562, 1591, 1627, 1635, 1688, 1712, 1765, 1784, 1862, 1875, 1988, 1989, 1996, 2118, 2234, 2341, 2347, 2410"	"Y"	"4.585969349940591e-12"	2	"1478, 2234"	"Y"	"1.025159258712707e-12"	2	"1478, 2234"	"Y"	"6.791054347170535e-13"	2	"1478, 2234"	"na"	"na"	0	"na"	"USP54_sequences_filtered_longestORFs_mafft_prank"	"USP54"	2053	11	"0.366806019369"	"0.362"	"Y"	0.0301	11	"845, 1129, 1160, 1290, 1291, 1405, 1412, 1732, 1823, 1939, 1985"	"N"	"0.9997345689145414"	0	"na"	"N"	"0.15291027386116157"	0	"na"	"N"	"0.5927396589958697"	0	"na"	"N"	"0.31192266203294183"	0	"na"	""	""	"shared"
"427"	"VPS11"	"VPS11_sequences_filtered_longestORFs_mafft_mincov_prank"	"VPS11_all"	1500	24	"0.048270606305"	"0.042"	"N"	"0.5166"	5	"440, 528, 682, 787, 854"	"N"	"0.9999985946152136"	0	"na"	"Y"	"0.0008361633364003558"	3	"789, 854, 1373"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"VPS11_sequences_filtered_longestORFs_mafft_prank"	"VPS11"	1166	12	"0.078603582166"	"0.072"	"N"	0.0824	5	"27, 304, 314, 591, 596"	"N"	"0.9999993365374775"	0	"na"	"Y"	"0.012111394464395"	4	"21, 63, 342, 596"	"N"	"1.0"	0	"na"	"N"	"0.5117085777865054"	0	"na"	""	""	"shared"
"428"	"VPS39"	"VPS39_sequences_filtered_longestORFs_mafft_mincov_prank"	"VPS39_all"	1501	23	"0.046946875948"	"0.052"	"Y"	"0.0000"	6	"68, 135, 146, 169, 225, 706"	"Y"	"7.272055658525019e-16"	1	"146"	"Y"	"2.5399423605918594e-30"	1	"146"	"Y"	"2.7057022431548876e-16"	1	"146"	"Y"	"1.5006105308565566e-22"	1	"146"	"VPS39_sequences_filtered_longestORFs_mafft_prank"	"VPS39"	1042	12	"0.056596878456"	"0.060"	"Y"	0	4	"79, 115, 930, 933"	"Y"	"0.0036263867910577537"	1	"115"	"Y"	"3.2872363224224216e-11"	3	"115, 464, 723"	"Y"	"0.002538961855010523"	1	"115"	"Y"	"1.5934882242290877e-05"	1	"115"	"position 115 due to internal splice variant"	""	"shared"
"429"	"WASHC4"	"WASHC4_sequences_filtered_longestORFs_mafft_mincov_prank"	"WASHC4_all"	1602	23	"0.054671143559"	"0.054"	"Y"	"0.0000"	32	"191, 361, 416, 453, 483, 510, 541, 571, 577, 602, 606, 763, 798, 802, 909, 818, 846, 850, 885, 891, 941, 1013, 1027, 1077, 1185, 1211, 1220, 1404, 1432, 1439, 1445, 1447"	"N"	"0.9934604233737435"	0	"na"	"Y"	"0.00020410173498656788"	3	"891, 1447, 1448"	"N"	"0.835270211411029"	0	"na"	"N"	"0.18787094775098143"	0	"na"	"WASHC4_sequences_filtered_longestORFs_mafft_prank"	"WASHC4"	1291	12	"0.047673831087"	"0.043"	"Y"	2e-04	1	"37"	"N"	"0.9999992783153051"	0	"na"	"Y"	"9.046577638308179e-07"	16	"37, 242, 245, 389, 506, 578, 630, 1073, 1084, 1152, 1176, 1207, 1208, 1267, 1275, 1278"	"N"	"0.9990004998331715"	0	"na"	"N"	"0.5127330190420621"	0	"na"	""	""	"shared"
"430"	"WFS1"	"WFS1_sequences_filtered_longestORFs_mafft_mincov_prank"	"WFS1_all"	1072	24	"0.081575261516"	"0.056"	"N"	"0.2613"	6	"78, 118, 486, 768, 806, 1004"	"N"	"0.9999996897186547"	0	"na"	"Y"	"9.570229689317189e-07"	5	"101, 118, 125, 230, 772"	"N"	"0.39971639333834935"	0	"na"	"Y"	"2.184769995878869e-06"	2	"118, 230"	"WFS1_sequences_filtered_longestORFs_mafft_prank"	"WFS1"	1109	11	"0.115587068116"	"0.087"	"Y"	0.0287	10	"166, 217, 483, 542, 647, 749, 768, 790, 888, 893"	"N"	"0.9999992486685281"	0	"na"	"Y"	"0.03804197055110089"	1	"166"	"N"	"1.0"	0	"na"	"N"	"0.5449833692075639"	0	"na"	""	""	"shared"
"431"	"WFS1[0-2346]"	"WFS1_sequences_filtered_longestORFs_mafft_mincov_prank_frag0to2346"	"WFS1_all[0-2346]"	782	24	"0.110155273852"	"0.078"	"N"	"0.4926"	5	"69, 118, 374, 486, 768"	"N"	"0.9999999833444236"	0	"na"	"Y"	"2.573536088277023e-05"	5	"101, 118, 125, 230, 772"	"N"	"1.0"	0	"na"	"Y"	"8.36043582541349e-06"	2	"118, 230"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"432"	"WFS1[2345-3216]"	"WFS1_sequences_filtered_longestORFs_mafft_mincov_prank_frag2345to3216"	"WFS1_all[2345-3216]"	290	24	"0.021378658292"	"0.016"	"N"	"0.5279"	2	"24, 222"	"N"	"0.9999999893580026"	0	"na"	"N"	"0.9312768299514572"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.9990004998331715"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"433"	"YIF1A"	"YIF1A_sequences_filtered_longestORFs_mafft_mincov_prank_part1_prank"	"YIF1A_all_part1"	1223	24	"0.122099669920"	"0.108"	"N"	"1.0000"	1	"190"	"N"	"0.9999998503785831"	0	"na"	"N"	"0.9986341687072853"	0	"na"	"N"	"0.7276027884144418"	0	"na"	"N"	"0.2608003778811103"	0	"na"	"YIF1A_sequences_filtered_longestORFs_mafft_prank_part2_prank"	"YIF1A_part2"	307	12	"0.092980087519"	"0.083"	"N"	1	0	"na"	"N"	"0.9999994430788052"	0	"na"	"N"	"0.9999999928145371"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"dupl yes"	""	"shared"
"434"	"YIF1B"	"YIF1A_sequences_filtered_longestORFs_mafft_mincov_prank_part2_prank"	"YIF1A_all_part2"	682	11	"0.052814080269"	"0.068"	"N"	"0.3729"	0	"na"	"N"	"0.9999997896859661"	0	"na"	"N"	"0.7552477206523797"	0	"na"	"N"	"0.34472785476720136"	0	"na"	"N"	"0.7641432556483685"	0	"na"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"onlyprimates"
"435"	"ZC3H18"	"ZC3H18_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZC3H18_all"	1100	24	"0.087671644891"	"0.083"	"N"	"0.6012"	3	"722, 782, 981"	"N"	"0.9999993848816375"	0	"na"	"Y"	"0.015299480271226013"	0	""	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"ZC3H18_sequences_filtered_longestORFs_mafft_prank"	"ZC3H18"	1226	11	"0.200106682861"	"0.187"	"Y"	0.0016	4	"54, 654, 771, 1080"	"N"	"0.9999991996195169"	0	"na"	"N"	"0.5258352764131282"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.05596661089965757"	0	"na"	""	""	"shared"
"436"	"ZC3H18[0-1101]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ZC3H18_sequences_filtered_longestORFs_mafft_prank_frag0to1101"	"ZC3H18[0-1101]"	367	11	"0.229802082341"	"0.219"	"Y"	0.0191	3	"54, 148, 163"	"N"	"0.9999990616263259"	0	"na"	"N"	"0.24086994381226873"	0	"na"	"Y"	"0.0005745060096894928"	1	"188"	"Y"	"0.00030751090743914297"	1	"188"	""	""	"onlybats"
"437"	"ZC3H18[1100-3678]"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"ZC3H18_sequences_filtered_longestORFs_mafft_prank_frag1100to3678"	"ZC3H18[1100-3678]"	859	11	"0.204731954234"	"0.189"	"N"	0.7392	4	"287, 404, 713, 744"	"N"	"0.9999982891136908"	0	"na"	"N"	"0.781377329393951"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.46301306831102595"	0	"na"	""	""	"onlybats"
"438"	"ZC3H7A"	"ZC3H7A_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZC3H7A_all"	1242	24	"0.100883053669"	"0.091"	"Y"	"0.0003"	8	"35, 150, 272, 389, 423, 540, 614, 1033"	"N"	"0.9999988073966796"	0	"na"	"N"	"0.9433840075471273"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	"ZC3H7A_sequences_filtered_longestORFs_mafft_prank"	"ZC3H7A"	1018	12	"0.207349246144"	"0.173"	"N"	0.9537	6	"194, 313, 318, 464, 606, 884"	"N"	"0.9999992934629285"	0	"na"	"Y"	"0.04687509899081552"	6	"92, 183, 216, 299, 318, 464"	"N"	"0.9314618921276734"	0	"na"	"N"	"0.3305491224578773"	0	"na"	""	""	"shared"
"439"	"ZDHHC5"	"ZDHHC5_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZDHHC5_all"	823	24	"0.078488206473"	"0.075"	"Y"	"0.0351"	2	"597, 742"	"N"	"0.9848981471344455"	0	"na"	"Y"	"0.013502502486699652"	2	"404, 597"	"N"	"1.0"	0	"na"	"N"	"0.49213608756256844"	0	"na"	"ZDHHC5_sequences_filtered_longestORFs_mafft_prank"	"ZDHHC5"	768	12	"0.080123114130"	"0.080"	"N"	1	1	"95"	"N"	"0.8751057533143412"	0	"na"	"Y"	"0.00028950851490339055"	3	"95, 387, 688"	"N"	"1.0"	0	"na"	"N"	"0.26820598310847715"	0	"na"	""	""	"shared"
"440"	"ZNF318"	"ZNF318_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZNF318_all"	2496	24	"0.335852925463"	"0.343"	"Y"	"0.0000"	32	"38, 75, 78, 104, 174, 392, 443, 703, 799, 1177, 1372, 1492, 1636, 1646, 1647, 1663, 1814, 1897, 1929, 1946, 1995, 2088, 2098, 2166, 2181, 2243, 2249, 2250, 2287, 2356, 2372, 2483"	"Y"	"0.0010039629225922107"	0	""	"Y"	"1.3246467997073662e-05"	2	"1636, 2098"	"Y"	"7.829709942783089e-05"	2	"1636, 2098"	"Y"	"1.1348614329410036e-06"	6	"1636, 1817, 1929, 1954, 2098, 2243"	"ZNF318_sequences_filtered_longestORFs_mafft_prank"	"ZNF318"	2395	11	"0.361499795329"	"0.353"	"N"	0.1184	0	"na"	"N"	"0.8750270725798085"	0	"na"	"N"	"0.5452621832627409"	0	"na"	"N"	"0.6505090947231271"	0	"na"	"N"	"0.11567161588366141"	0	"na"	""	""	"shared"
"441"	"ZNF503"	"ZNF503_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZNF503_all"	802	21	"0.049882463869"	"0.026"	"N"	"1.0000"	1	"87"	"N"	"0.9999980745506383"	0	"na"	"Y"	"0.024559140884415645"	1	"177"	"N"	"1.0"	0	"na"	"N"	"0.6206425292935231"	0	"na"	"ZNF503_sequences_filtered_longestORFs_mafft_prank"	"ZNF503"	682	9	"0.036470300914"	"0.033"	"N"	1	0	"na"	"N"	"0.9999987418249204"	0	"na"	"N"	"0.7780311233967817"	0	"na"	"N"	"1.0"	0	"na"	"N"	"1.0"	0	"na"	""	""	"shared"
"442"	"ZYG11B"	"ZYG11B_sequences_filtered_longestORFs_mafft_mincov_prank"	"ZYG11B_all"	1128	24	"0.023655415579"	"0.025"	"Y"	"0.0000"	1	"998"	"N"	"0.9999975270769591"	0	"na"	"Y"	"0.020268109682591493"	4	"896, 990, 993, 998"	"N"	"1.0"	0	"na"	"N"	"0.6757041139607441"	0	"na"	"ZYG11B_sequences_filtered_longestORFs_mafft_prank"	"ZYG11B"	854	12	"0.019630434764"	"0.021"	"N"	1	0	"na"	"N"	"0.9999984077343413"	0	"na"	"N"	"0.1157682212961436"	0	"na"	"N"	"1.0"	0	"na"	"N"	"0.6750287475861135"	0	"na"	""	""	"shared"