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DGINN_202011262248_hyphybpp-202012192053_codeml-summary.txt 7.28 KiB
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File	Name	Gene	GeneSize	NbSpecies	omegaM0Bpp	omegaM0codeml	BUSTED	BUSTED_p-value	MEME_NbSites	MEME_PSS	BppM1M2	BppM1M2_p-value	BppM1M2_NbSites	BppM1M2_PSS	BppM7M8	BppM7M8_p-value	BppM7M8_NbSites	BppM7M8_PSS	codemlM1M2	codemlM1M2_p-value	codemlM1M2_NbSites	codemlM1M2_PSS	codemlM7M8	codemlM7M8_p-value	codemlM7M8_NbSites	codemlM7M8_PSS
ATE1_bat_select_cut_mafft_prank	ATE1	ATE1	571	11	0.15571103991607290751	0.147	N	0.0691	22	11, 17, 18, 27, 28, 29, 30, 108, 176, 223, 242, 243, 248, 251, 330, 346, 349, 350, 357, 361, 364, 571	N	0.9999998628509369	0	na	N	0.9999862060854904	0	na	N	1.0	0	na	N	1.0	0	na
CEP43_bat_realign_mafft_prank	CEP43	FGFR1OP	744	9	0.22520577281291204175	na	Y	0.0000	13	8, 33, 158, 183, 184, 216, 226, 392, 527, 547, 606, 705, 722	N	0.9999995178687894	0	na	N	0.9999984890175757	0	na	na	na	0	na	na	na	0	na
COL6A1_bat_cut_hipArm_mafft_prank	COL6A1	COL6A1	1078	9	0.082800084329500089897	0.077	Y	0.0023	46	15, 26, 99, 115, 180, 184, 202, 221, 226, 227, 283, 306, 337, 375, 387, 390, 399, 472, 603, 632, 678, 685, 725, 726, 738, 740, 761, 768, 770, 808, 834, 856, 895, 902, 911, 916, 919, 920, 956, 958, 967, 985, 996, 1009, 1060, 1078	N	0.9999996594925176	0	na	Y	1.4694972038785021e-06	8	64, 108, 227, 364, 387, 472, 727, 986	N	0.13931746906383644	0	na	Y	0.017650344100739557	1	472
COQ8B_bat_select-2_mafft_prank	COQ8B	COQ8B	549	11	0.18249719548855317108	0.152	N	0.8349	3	20, 56, 542	N	0.9999990844975953	0	na	N	0.2543943107209184	0	na	N	1.0	0	na	Y	0.041794104084912305	0	
CYB5B_bat_select-2_mafft_prank	CYB5B	CYB5B	278	12	0.26049862063255097011	0.265	Y	0.0000	4	34, 116, 117, 179	N	0.9999997690552203	0	na	N	0.9987889831935154	0	na	N	0.9831436846348578	0	na	N	0.6187833918061296	0	na
DDX21_bat_select_mafft_prank	DDX21	DDX21	875	12	0.20291300096326300717	0.191	Y	0.0096	5	119, 163, 220, 852, 853	N	0.9999982397800553	0	na	N	0.4659703818153812	0	na	N	1.0	0	na	N	0.5106861833664071	0	na
ELOB_bat_select_mafft_prank	ELOB	ELOB	124	7	0.022399397377356227573	0.023	Y	0.0017	0	na	N	0.999999863385606	0	na	N	0.8892346112479187	0	na	N	1.0	0	na	N	0.9990004998333987	0	na
ERO1B_bat_select_mafft_prank	ERO1B	ERO1B	777	11	0.036193322757663994038	0.039	N	1.0000	1	386	N	0.9999999786846276	0	na	N	0.18314924606569427	0	na	N	1.0	0	na	N	1.0	0	na
ETFA_bat_select_mafft_prank	ETFA	ETFA	463	9	0.14661583111874651464	0.130	N	0.0544	4	95, 149, 252, 281	N	0.9999990190681537	0	na	N	0.08502800413099425	0	na	N	1.0	0	na	N	0.997004495503217	0	na
GNB1_bat_select_add-2_mafft_prank	GNB1	GNB1	340	12	0.0018342406212685069111	0.002	N	0.9997	0	na	N	0.9999999737615329	0	na	N	0.9999998460152829	0	na	N	0.997004495503217	0	na	N	0.997004495503217	0	na
GOLGA7_bat_select_mafft_prank	GOLGA7	GOLGA7	149	12	0.22057358315093311685	0.207	Y	0.0000	0	na	Y	2.7070592544122577e-07	1	123	Y	1.7510477519039514e-09	1	123	Y	9.285332670143659e-11	1	123	Y	2.0005777681870837e-11	1	123
HSBP1_bat-select_mafft_prank	HSBP1	HSBP1	110	12	0.15412257221850680922	0.152	N	1.0000	0	na	N	0.9999999941107944	0	na	N	0.9999805391217563	0	na	N	0.9990004998333987	0	na	N	1.0	0	na
INTS4_bat_select_mafft_prank	INTS4	INTS4	1016	10	0.076028837169011515007	0.079	N	0.9908	3	218, 219, 731	N	0.9999989182894236	0	na	Y	0.004664170724173206	4	25, 521, 988, 989	N	1.0	0	na	N	0.5804219151408183	0	na
MOV10_bat_cut_mafft_prank	MOV10	MOV10	1173	12	0.19324965973420044074	0.196	Y	0.0052	14	7, 34, 41, 263, 391, 455, 485, 527, 575, 657, 661, 1066, 1067, 1068	N	0.9999989373906107	0	na	Y	0.0032754616051401913	1	391	N	1.0	0	na	Y	0.012727376189877581	0	
MTARC1_bat_select_mafft_prank	MTARC1	MARC1	386	9	0.17111475068673179245	0.188	N	0.0986	32	7, 30, 31, 38, 39, 41, 46, 48, 62, 64, 68, 74, 82, 85, 91, 94, 113, 120, 162, 179, 183, 211, 218, 220, 245, 270, 273, 300, 306, 331, 336, 371	N	0.9999997707509728	0	na	N	0.9999808885270796	0	na	N	1.0	0	na	N	1.0	0	na
PABPC1_bat_select_mafft_prank	PABPC1	PABPC1	735	12	0.093895137051223293012	0.093	N	0.0509	2	471, 671	N	0.9720024792000442	0	na	N	0.609585807664959	0	na	N	0.7124824490892332	0	na	N	0.32497728220613026	0	na
PCSK6_bat_select_mafft_prank	PCSK6	PCSK6	1654	8	0.098698549445369543331	0.089	Y	0.0000	16	28, 499, 522, 690, 749, 889, 948, 953, 966, 1010, 1303, 1310, 1324, 1325, 1350, 1398	N	0.9999997156783542	0	na	N	0.10593739617924755	0	na	N	1.0	0	na	Y	3.761624567607716e-10	0	
PDE4DIP_bat_select_check_mafft_prank	PDE4DIP	PDE4DIP	2894	9	0.24383690569934904357	0.244	N	0.0597	49	179, 292, 315, 375, 443, 541, 546, 732, 888, 931, 991, 1201, 1208, 1397, 1437, 1559, 1564, 1583, 1640, 1697, 1783, 1891, 1927, 2005, 2008, 2016, 2018, 2021, 2023, 2027, 2028, 2041, 2135, 2187, 2193, 2194, 2276, 2325, 2364, 2388, 2392, 2450, 2516, 2517, 2526, 2531, 2580, 2855, 2869	N	0.9999979304287578	0	na	N	0.7675900915830035	0	na	N	1.0	0	na	N	0.20028778934513805	0	na
RDX_bat_select_mafft_prank	RDX	RDX	677	11	0.070830287871767122487	0.065	Y	0.0012	3	2, 348, 608	N	0.9999984528438435	0	na	Y	0.00870082277450124	2	348, 601	N	1.0	0	na	N	0.9464851479532084	0	na
REEP6_LA_bat_select_mafft_prank	REEP6	REEP6-A	382	10	0.29517622624592770864	0.237	N	0.6966	1	378	N	0.6758702216545132	0	na	N	0.1986200915147093	0	na	N	0.6616622828278411	0	na	N	0.31505753690349364	0	na
REEP6_LB_bat_select_mafft_prank	REEP6	REEP6-B	810	6	0.93827969065999239362	0.952	Y	0.0000	11	377, 380, 492, 522, 526, 576, 589, 590, 599, 618, 793	N	0.11712587948916774	0	na	Y	0.04708383426090607	0		Y	0.01900601064703638	0		Y	0.014610716685120028	0	
RIPK1_sequences_filtered_longestORFs_quickclean_mafft_prank	RIPK1	RIPK1	804	24	0.43700247549171972183	0.412	N	0.0863	20	55, 95, 103, 277, 348, 377, 404, 565, 574, 581, 584, 586, 613, 617, 667, 690, 695, 707, 725, 797	Y	0.046009519791645484	0		Y	0.001203426338327248	1	797	Y	0.024551066100545648	1	797	Y	0.0002102948425097665	1	797
SDF2_bat_select_mafft_prank	SDF2	SDF2	246	12	0.082797829312180992734	0.080	N	0.2145	0	na	N	0.999999439606811	0	na	N	0.9999999930209924	0	na	N	1.0	0	na	N	1.0	0	na
SELENOS_bat_select_mafft_prank	SELENOS	SELENOS	218	8	0.16939756613179995925	0.172	N	0.8176	5	71, 72, 85, 128, 173	N	0.9999995791182277	0	na	N	0.389714156459387	0	na	N	0.9970044955034437	0	na	N	0.2133118712228997	0	na
TARS2_bat_same_mafft_prank	TARS2	TARS2	1893	11	0.13453722174632359865	0.164	N	1.0000	6	121, 571, 1151, 1732, 1832, 1833	N	0.9999988295192026	0	na	N	0.9999999986184775	0	na	N	1.0	0	na	N	0.4479829971847956	0	na
TBCA_bat_same_mafft_prank	TBCA	TBCA	190	12	0.13752129483741223903	0.242	Y	0.0000	1	112	N	0.9999997004843402	0	na	N	0.9935970583143424	0	na	Y	5.8900579536612135e-09	3	2, 3, 4	na	na	0	na
TMEM39B_bat_same_mafft_prank	TMEM39B	TMEM39B	880	12	0.027235007039035353388	0.041	Y	0.0000	3	217, 331, 332	N	0.9999999952856342	0	na	N	0.9997082226309755	0	na	Y	1.5181774326767543e-06	2	169, 216	na	na	0	na
TMPRSS2_bat_same_mafft_prank	TMPRSS2	TMPRSS2	1174	12	0.14029058400872645995	0.145	N	0.9333	12	630, 644, 649, 688, 775, 888, 921, 1003, 1051, 1055, 1066, 1173	N	0.9999990104220509	0	na	N	0.6218822946709852	0	na	N	1.0	0	na	N	0.788991288016829	0	na
TMPRSS2_bat_select_cut_mafft_prank	TMPRSS2	TMPRSS2	574	12	0.12948903836486919117	0.127	N	0.9358	19	59, 73, 78, 108, 115, 117, 121, 133, 144, 241, 259, 288, 321, 403, 421, 451, 455, 466, 573	N	0.9999999060492017	0	na	N	0.3348934269948105	0	na	N	1.0	0	na	N	0.4210515526274131	0	na
TYSND1_bat_select_mafft_prank	TYSND1	TYSND1	676	8	0.21586721789783006042	0.184	N	0.2118	5	54, 93, 95, 124, 205	N	0.9999989615094754	0	na	Y	0.0016413879993395736	1	95	N	1.0	0	na	Y	1.0838402897292556e-06	2	95, 317