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tests.sh 606 B
nextflow src/nf_modules/Bowtie2/tests/index.nf \
-c src/nf_modules/Bowtie2/bowtie2.config \
-profile docker \
--fasta "data/tiny_dataset/fasta/tiny_v2.fasta"
nextflow src/nf_modules/Bowtie2/tests/mapping_single.nf \
-c src/nf_modules/Bowtie2/bowtie2.config \
-profile docker \
--index "data/tiny_dataset/fasta/*.bt2" \
--fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
nextflow src/nf_modules/Bowtie2/tests/mapping_paired.nf \
-c src/nf_modules/Bowtie2/bowtie2.config \
-profile docker \
--index "data/tiny_dataset/fasta/*.bt2" \
--fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq"