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nextflow
Commits
4be336cf
Verified
Commit
4be336cf
authored
Jul 23, 2018
by
Laurent Modolo
Browse files
Merge branch 'master' of gitlab_lbmc:pipelines/nextflow
parents
5c6080a9
4e36c3af
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README.md
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@@ -76,6 +76,33 @@ for example to run the tests on `Bowtie2` run:
src/nf_modules/Bowtie2/tests/tests.sh
```
## Available tools
| tool | nf module | docker module | sge module |
|------|:---------:|:-------------:|:----------:|
BEDtools | ok | ok | ok
Bowtie2 | ok | ok | ok
FastQC |
**no**
| ok | ok
HISAT2 |
**no**
| ok | ok
HTSeq | ok | ok | ok
Kallisto | ok | ok | ok
MultiQC |
**no**
| ok | ok
RSEM | ok | ok | ok
SAMtools | ok | ok | ok
SRAtoolkit |
**no**
| ok | ok
Salmon |
**no**
| ok | ok
TopHat |
**no**
| ok | ok
Trimmomatic |
**no**
| ok | ok
UrQt | ok | ok | ok
canu | ok | ok | ok
cutadapt | ok | ok | ok
deepTools |
**no**
| ok | ok
file_handle |
**no**
| ok | ok
pigz |
**no**
| ok | ok
sra-tools | ok |
**no**
|
**no**
## Contributing
Please read
[
CONTRIBUTING.md
](
CONTRIBUTING.md
)
for details on our code of conduct, and the process for submitting pull requests to us.
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