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htseq.def 479 B
Bootstrap: docker
From: ubuntu:18.04
%labels
MAINTAINER Laurent Modolo
%post
mkdir -p /sps /pbs /scratch
HTSEQ_VERSION=0.8.0
PACKAGES="build-essential \
python3-pip \
python3-setuptools \
python3-dev \
python3-wheel"
apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
pip3 install numpy==1.14.3
pip3 install pysam==0.15.0
pip3 install HTSeq==${HTSEQ_VERSION}
%environment
export HTSEQ_VERSION=0.8.0
%runscript
exec /bin/bash "$@"