Skip to content
Snippets Groups Projects
Verified Commit 5f4bd25b authored by Laurent Modolo's avatar Laurent Modolo
Browse files

Kallisto: nf fix index for single-end

parent 91613eea
No related branches found
No related tags found
No related merge requests found
......@@ -113,7 +113,7 @@ process mapping_fastq {
script:
"""
mkdir ${reads.baseName}
kallisto quant -i ${index[0].baseName} -t ${task.cpus} --single
kallisto quant -i ${index} -t ${task.cpus} --single
--bias --bootstrap-samples 100 -o ${reads.baseName} \
-l ${params.mean} -s ${params.sd} -o ./ \
${reads} > ${reads.baseName}_kallisto_report.txt
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment