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Verified Commit 211d7cd7 authored by Laurent Modolo's avatar Laurent Modolo
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RSEM/1.3.0: add docker files

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FROM ubuntu:18.04
MAINTAINER Laurent Modolo
ENV RSEM_VERSION=1.3.0
ENV BOWTIE2_VERSION=2.3.4.1
ENV PACKAGES git=1:2.17.0* \
build-essential=12.4* \
ca-certificates=20180409 \
zlib1g-dev=1:1.2.11* \
bowtie2=${BOWTIE2_VERSION}*
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
RUN git clone https://github.com/deweylab/RSEM.git RSEM_${RSEM_VERSION} && \
cd RSEM_${RSEM_VERSION} && \
git checkout tags/v${RSEM_VERSION} && \
make && \
cd .. && \
mv RSEM_${RSEM_VERSION}/rsem-* RSEM_${RSEM_VERSION}/rsem_* RSEM_${RSEM_VERSION}/convert-* RSEM_${RSEM_VERSION}/extract-* /usr/bin/ && \
rm -Rf RSEM_${RSEM_VERSION}
#!/bin/sh
docker build src/nf_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
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