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addBasalExpression.Rd
add_interaction.Rd
already_init_variable.Rd
anovaParallel.Rd
averageByGroup.Rd
build_missingColumn_with_na.Rd
build_sub_obj_return_to_user.Rd
calculate_actualMixed.Rd
calculate_actual_interactionX2_values.Rd
calculate_actual_interactionX3_values.Rd
check_input2interaction.Rd
clean_variable_name.Rd
compareInferenceToExpected.Rd
computeActualInteractionFixEff.Rd
compute_covariation.Rd
convert2Factor.Rd
correlation_matrix_2df.Rd
countMatrix_2longDtf.Rd
counts_plot.Rd
dispersion_plot.Rd
dot-fitModel.Rd
dot-getColumnWithSampleID.Rd
dot-isDispersionMatrixValid.Rd
dot-parallel_fit.Rd
dot-parallel_update.Rd
dot-replicateByGroup.Rd
dot-replicateMatrix.Rd
dot-replicateRows.Rd
dot-subsetData_andfit.Rd
drop_randfx.Rd
endsWithDigit.Rd
evaluateDispersion.Rd
exportReportFile.Rd
extractDESeqDispersion.Rd
extractTMBDispersion.Rd
extract_fixed_effect.Rd
extract_ran_pars.Rd
fillInCovarMatrice.Rd
fillInInteraction.Rd
fillInVariable.Rd
filter_dataframe.Rd
findAttribute.Rd
fitModelParallel.Rd
fitUpdate.Rd
generateActualForMainFixEff.Rd
generateActualInteractionX2_FixEff.Rd
generateActualInteractionX3_FixEff.Rd
generateCountTable.Rd
generateGridCombination_fromListVar.Rd
generateReplicationMatrix.Rd
generate_BE.Rd
getActualInteractionFixEff.Rd
getActualIntercept.Rd
getActualMainFixEff.Rd
getActualMixed_typeI.Rd
getBinExpression.Rd
getCategoricalVar_inFixedEffect.Rd
getCoefficients.Rd
getCountsTable.Rd
getCovarianceMatrix.Rd
getData2computeActualFixEffect.Rd
getDataFromMvrnorm.Rd
getDataFromUser.Rd
getDispersionComparison.Rd
getDispersionMatrix.Rd
getEstimate_df.Rd
getGeneMetadata.Rd
getGivenAttribute.Rd
getGlance.Rd
getGridCombination.Rd
getGrobTable.Rd
getInput2mvrnorm.Rd
getInput2simulation.Rd
getLabelExpected.Rd
getLabels.Rd
getListVar.Rd
getLog_qij.Rd
getMu_ij.Rd
getMu_ij_matrix.Rd
getNumberOfCombinationsInInteraction.Rd
getReplicationMatrix.Rd
getSE_df.Rd
getSampleID.Rd
getSampleMetadata.Rd
getSettingsTable.Rd
getStandardDeviationInCorrelation.Rd
getSubCountsTable.Rd
getTidyGlmmTMB.Rd
getValidDispersion.Rd
get_inference.Rd
glance_tmb.Rd
group_logQij_per_genes_and_labels.Rd
handleAnovaError.Rd
identity_plot.Rd
inferenceToExpected_withFixedEff.Rd
inferenceToExpected_withMixedEff.Rd
init_variable.Rd
inputs_checking.Rd
isValidInput2fit.Rd
is_formula_mixedTypeI.Rd