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aduvermy's avatar
add fix_reference_effect parameter and utils
Arnaud Duvermy authored 
Former-commit-id: 9d73431e71bc99d4ad7e6ad1ce8d0877db320447
Former-commit-id: 52edbac846370096cf86ff60c723a1937956e284
Former-commit-id: 9502ca085592283dd8aa5d2b3ed2267fb97561bb
56f398bd
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aduvermy's avatar 56f398bd
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Name Last commit Last update
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figures
Area_Under_Curve.Rd
ConfusionDF.Rd
ConfusionMatrix.Rd
accuracy.Rd
addBasalExpression.Rd
add_interaction.Rd
already_init_variable.Rd
anovaParallel.Rd
averageByGroup.Rd
build_gg_pr_curve.Rd
build_gg_roc_curve.Rd
build_missingColumn_with_na.Rd
build_sub_obj_return_to_user.Rd
calculate_actualMixed.Rd
calculate_actual_interactionX2_values.Rd
calculate_actual_interactionX3_values.Rd
checkFractionOfZero.Rd
check_input2interaction.Rd
clean_variable_name.Rd
compareInferenceToExpected.Rd
computeActualInteractionFixEff.Rd
compute_covariation.Rd
compute_metrics_summary.Rd
compute_pr_auc.Rd
compute_pr_curve.Rd
compute_rmse.Rd
compute_roc_auc.Rd
compute_roc_curve.Rd
compute_rsquare.Rd
convert2Factor.Rd
correlation_matrix_2df.Rd
countMatrix_2longDtf.Rd
counts_plot.Rd
custom_matrix_transform.Rd
detect_categoricals_vars.Rd
detect_row_matx_bellow_threshold.Rd
diagnostic_plot.Rd
drop_randfx.Rd
endsWithDigit.Rd
eval_identityTerm.Rd
evaluation_report.Rd
extract_ddsDispersion.Rd
extract_fixed_effect.Rd
extract_ran_pars.Rd
extract_tmbDispersion.Rd
fillInCovarMatrice.Rd
fillInInteraction.Rd
fillInVariable.Rd
filter_dataframe.Rd
findAttribute.Rd
first_non_null_index.Rd
fitModel.Rd
fitModelParallel.Rd
fitUpdate.Rd
generateActualForMainFixEff.Rd
generateActualInteractionX2_FixEff.Rd
generateActualInteractionX3_FixEff.Rd
generateCountTable.Rd
generateGridCombination_fromListVar.Rd
generateReplicationMatrix.Rd
generate_basal_expression.Rd
getActualInteractionFixEff.Rd
getActualIntercept.Rd
getActualMainFixEff.Rd
getActualMixed_typeI.Rd
getBinExpression.Rd
getCategoricalVar_inFixedEffect.Rd
getCoefficients.Rd
getColumnWithSampleID.Rd
getCountsTable.Rd
getCovarianceMatrix.Rd
getData2computeActualFixEffect.Rd
getDataFromMvrnorm.Rd
getDataFromRnorm.Rd
getDataFromUser.Rd
getDispersionComparison.Rd
getDispersionMatrix.Rd
getEstimate_df.Rd
getGeneMetadata.Rd
getGivenAttribute.Rd
getGlance.Rd
getGridCombination.Rd
getInput2mvrnorm.Rd
getInput2simulation.Rd
getLabelExpected.Rd
getLabels.Rd
getListVar.Rd
getLog_qij.Rd
getMu_ij.Rd
getMu_ij_matrix.Rd
getNumberOfCombinationsInInteraction.Rd
getRefLevel.Rd
getReplicationMatrix.Rd
getSE_df.Rd
getSampleID.Rd
getSampleMetadata.Rd
getSettingsTable.Rd
getStandardDeviationInCorrelation.Rd
getSubCountsTable.Rd