Commits · c2ac944e7cc9ba1e3a0dcd2fc9aed5eaa71361b8 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

Apr 12, 2024
- fix error in example · eb5621cf
  Arnaud Duvermy authored 1 year ago
  eb5621cf
- fix bug · a83c47cc
  Arnaud Duvermy authored 1 year ago
  a83c47cc
- fix bug · ace3e5a4
  Arnaud Duvermy authored 1 year ago
  ace3e5a4
Apr 11, 2024
- minor changes · 4ad196d0
  Arnaud Duvermy authored 1 year ago
  4ad196d0
- add ability to combine mock obj · ca65a361
  Arnaud Duvermy authored 1 year ago
  ca65a361
- fix error test · c698e405
  Arnaud Duvermy authored 1 year ago
  c698e405
- minor changes · 631bdb3a
  Arnaud Duvermy authored 1 year ago
  631bdb3a
Apr 05, 2024
- normal_distrib = 'univariate' as default behavior · a9f24445
  Arnaud Duvermy authored 1 year ago
  a9f24445
- fix test · 396c3a8a
  Arnaud Duvermy authored 1 year ago
  396c3a8a
Apr 04, 2024
- fix example · d5acd6eb
  Arnaud Duvermy authored 1 year ago
  d5acd6eb
- fix example · 044676a2
  Arnaud Duvermy authored 1 year ago
  044676a2
- fix tests errors · aeb54e21
  Arnaud Duvermy authored 1 year ago
  aeb54e21
- fix pb with test and add embedded public files · 37fc3633
  Arnaud Duvermy authored 1 year ago
  37fc3633
- mu hided for user exp · b1d48967
  Arnaud Duvermy authored 1 year ago
  b1d48967
- enhance report · a0429440
  Arnaud Duvermy authored 1 year ago
  a0429440
- add functions for exporting · 90905d87
  Arnaud Duvermy authored 1 year ago
  90905d87
- coord_fixed · 37c29f73
  Arnaud Duvermy authored 1 year ago
  37c29f73
Apr 03, 2024
- sd_env and sd_intercept splitted in description · 6676f52a
  Arnaud Duvermy authored 1 year ago
  6676f52a
- modif error message · ccc83cd0
  Arnaud Duvermy authored 1 year ago
  ccc83cd0
Apr 02, 2024
- replaceReferenceValuesBy0 to replaceUnexpectedInteractionValuesBy0 · 9ecf7a07
  Arnaud Duvermy authored 1 year ago
  9ecf7a07
- rm unexpected var · 9ce1e8c3
  Arnaud Duvermy authored 1 year ago
  9ce1e8c3
- add check for <countMatrix> and <metadata> dimensions · 8b076378
  Arnaud Duvermy authored 1 year ago
  8b076378
Mar 27, 2024
- fix pb when increasing sd(interaction) · 54db8373
  Arnaud Duvermy authored 1 year ago
  54db8373
Mar 26, 2024
- add fix_reference_effect parameter and utils · 56f398bd
  Arnaud Duvermy authored 1 year ago
  56f398bd
Mar 25, 2024
- fix pb with interaction in get_effects_from_rnorm · b299e9c2
  Arnaud Duvermy authored 1 year ago
  b299e9c2
- fix message info genes counts bellow_threshold · 00ec14ba
  Arnaud Duvermy authored 1 year ago
  00ec14ba
Mar 20, 2024
- add RMSE values in report_evaluation · bd9f3b58
  Arnaud Duvermy authored 1 year ago
  bd9f3b58
- add warnings, row_threshold for filtering, univariate simulation · dcf4ac06
  Arnaud Duvermy authored 1 year ago
  dcf4ac06
Mar 14, 2024
- rearrange rocr classes · 0542b1c4
  Arnaud Duvermy authored 1 year ago
  0542b1c4
- missing file · e3ae7b8e
  Arnaud Duvermy authored 1 year ago
  
  e3ae7b8e
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to calculate performance_ratio · 736fc449
  Arnaud Duvermy authored 1 year ago
  
  736fc449
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
Jan 24, 2024
- rebuild packg modifying seqDepth scaling method · 32ef0d7f
  Arnaud Duvermy authored 1 year ago
  
  32ef0d7f
Jan 23, 2024
- enhance visual on webpage · 21ccc353
  Arnaud Duvermy authored 1 year ago
  
  21ccc353
Jan 22, 2024
- add extdata + modif seqDepth control + reshape website · d6ab1626
  Arnaud Duvermy authored 1 year ago
  
  d6ab1626