Commits · b299e9c29e9c44ff72d56b5a6058405a54436dd3 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

Mar 25, 2024

fix pb with interaction in get_effects_from_rnorm · b299e9c2

Arnaud Duvermy authored 1 year ago

Former-commit-id: add949833d02628cc864cb8cfd3b40de6a302029
Former-commit-id: d1e055ee38670215d20b9da8dd773be1626da26b
Former-commit-id: 4e40eeb084f58add6946d3ab911f9b897474c432

b299e9c2

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 1 year ago

Former-commit-id: 2a7d68dbecbb5d9bcf4dd54707c676e02ecc94d9
Former-commit-id: f542b934c7850ced9eb6bb245040b60a801cdf19

bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06

Arnaud Duvermy authored 1 year ago

Former-commit-id: 6f67fe5a822a936b61299d225c967880a1a0be09
Former-commit-id: 3c65811b477757c13fbeed89e0cefeac6fd283d5

dcf4ac06

Mar 14, 2024
- rearrange rocr classes · 0542b1c4
  Arnaud Duvermy authored 1 year ago
  
  Former-commit-id: a576601408ea35fe94f2ee9247af4cf75935e192
  0542b1c4
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to calculate performance_ratio · 736fc449
  Arnaud Duvermy authored 1 year ago
  
  736fc449
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- rm warning · 77011791
  Arnaud Duvermy authored 1 year ago
  
  77011791
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
- GPL3 licence + test coverage in CI · 3074832e
  Arnaud Duvermy authored 1 year ago
  
  3074832e
Jan 23, 2024
- enhance visual on webpage · 21ccc353
  Arnaud Duvermy authored 1 year ago
  
  21ccc353
Jan 22, 2024
- add extdata + modif seqDepth control + reshape website · d6ab1626
  Arnaud Duvermy authored 1 year ago
  
  d6ab1626
Jan 17, 2024
- try relaunch CI · c051b515
  Arnaud Duvermy authored 1 year ago
  
  c051b515
Jan 12, 2024
- commit before merging branch · feb122dd
  Arnaud Duvermy authored 1 year ago
  
  feb122dd
Jan 11, 2024
- update vignette · 4e82e786
  Arnaud Duvermy authored 1 year ago
  
  4e82e786
- modif computing AUC · 63eb9683
  Arnaud Duvermy authored 1 year ago
  
  63eb9683
Jan 10, 2024
- backup before lot of change for ROC/PR curves · 8884f332
  Arnaud Duvermy authored 1 year ago
  
  8884f332
Dec 18, 2023
- v2.0.0 beta - memory optim + add metrics performances · 933a37de
  Arnaud Duvermy authored 1 year ago
  
  933a37de
Nov 22, 2023
- fitModelParallel memory optimization · 9b37e16e
  Arnaud Duvermy authored 1 year ago
  
  9b37e16e
Oct 26, 2023
- Fix NOTE "no visible binding for global variable" linked to ggplot2 · aca04dec
  Arnaud Duvermy authored 1 year ago
  
  aca04dec
- fix issues with writing the 'group' information in log files during model update · f664caec
  Arnaud Duvermy authored 1 year ago
  
  f664caec
- improve log file managment · 89a84395
  Arnaud Duvermy authored 1 year ago
  
  89a84395
- reorganized R files · 0e72a391
  Arnaud Duvermy authored 1 year ago
  
  0e72a391
Oct 24, 2023
- update flat_full · f3009d68
  Arnaud Duvermy authored 1 year ago
  
  f3009d68
Oct 18, 2023
- init v1.0.0 · 807896a7
  Arnaud Duvermy authored 1 year ago
  
  807896a7