Commits · 90905d870b0b887f2ff7e4d5e25253aca0013c53 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

Apr 04, 2024

Arnaud Duvermy authored 11 months ago

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90905d87

coord_fixed · 37c29f73

Arnaud Duvermy authored 11 months ago

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37c29f73

Apr 03, 2024

sd_env and sd_intercept splitted in description · 6676f52a

Arnaud Duvermy authored 11 months ago

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6676f52a

fix test · 7cfdc833

Arnaud Duvermy authored 11 months ago

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7cfdc833

modif error message · ccc83cd0

Arnaud Duvermy authored 11 months ago

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ccc83cd0

fix test · 30416dda

Arnaud Duvermy authored 11 months ago

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30416dda

Merge branch 'v2.0.6' of... · 9ef85918

Arnaud Duvermy authored 11 months ago

Merge branch 'v2.0.6' of http://gitbio.ens-lyon.fr/LBMC/yvertlab/vortex/plasticity_mutation/HTRfit into v2.0.6

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9ef85918

Apr 02, 2024

replaceReferenceValuesBy0 to replaceUnexpectedInteractionValuesBy0 · 9ecf7a07

Arnaud Duvermy authored 11 months ago

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9ecf7a07

rm unexpected var · 9ce1e8c3

Arnaud Duvermy authored 11 months ago

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9ce1e8c3

fix test · dcfbc2d0

Arnaud Duvermy authored 11 months ago

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dcfbc2d0

add check for <countMatrix> and <metadata> dimensions · 8b076378

Arnaud Duvermy authored 11 months ago

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8b076378

Mar 27, 2024

fix pb when increasing sd(interaction) · 54db8373

Arnaud Duvermy authored 11 months ago

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54db8373

update tuto vignettes · 725b3aee

Arnaud Duvermy authored 11 months ago

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725b3aee

add vignettes for FAQ and metrics · eedc1c6a

Arnaud Duvermy authored 11 months ago

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eedc1c6a

update source tar.gz · 6824b5b7

Arnaud Duvermy authored 11 months ago

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6824b5b7

update pub_dispersion · 670ca439

Arnaud Duvermy authored 11 months ago

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670ca439

Mar 26, 2024

update source tar.gz v2.0.6 · 7161a8f4

Arnaud Duvermy authored 11 months ago

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7161a8f4

update tutorial · 9cb65372

Arnaud Duvermy authored 11 months ago

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9cb65372

update embedded file · 16153629

Arnaud Duvermy authored 11 months ago

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16153629

update readme · b7267929

Arnaud Duvermy authored 11 months ago

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b7267929

add fix_reference_effect parameter and utils · 56f398bd

Arnaud Duvermy authored 11 months ago

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56f398bd

Mar 25, 2024

update tar.gz · 36db649c

Arnaud Duvermy authored 11 months ago

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36db649c

fix pb with interaction in get_effects_from_rnorm · b299e9c2

Arnaud Duvermy authored 11 months ago

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b299e9c2

fix message info genes counts bellow_threshold · 00ec14ba

Arnaud Duvermy authored 11 months ago

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00ec14ba

add dockerfile v2.0.6 · 3166c450

Arnaud Duvermy authored 11 months ago

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3166c450

increment version · 013f807b

Arnaud Duvermy authored 11 months ago

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013f807b

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 11 months ago

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bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06
Arnaud Duvermy authored 11 months ago
```
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```
dcf4ac06

Mar 14, 2024
- rearrange rocr classes · 0542b1c4
  Arnaud Duvermy authored 1 year ago
  
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  0542b1c4
- missing file · e3ae7b8e
  Arnaud Duvermy authored 1 year ago
  
  e3ae7b8e
- increment version · 952032d1
  Arnaud Duvermy authored 1 year ago
  
  952032d1
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to calculate performance_ratio · 736fc449
  Arnaud Duvermy authored 1 year ago
  
  736fc449
- transform example · 64f7a132
  Arnaud Duvermy authored 1 year ago
  
  64f7a132
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- build page only on master · 968ef436
  Arnaud Duvermy authored 1 year ago
  
  968ef436
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- rm warning · 77011791
  Arnaud Duvermy authored 1 year ago
  
  77011791