Commits · 56f398bdcf1509aefe9979427faecc31325ba555 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

Mar 26, 2024

add fix_reference_effect parameter and utils · 56f398bd

Arnaud Duvermy authored 1 year ago

Former-commit-id: 9d73431e71bc99d4ad7e6ad1ce8d0877db320447
Former-commit-id: 52edbac846370096cf86ff60c723a1937956e284
Former-commit-id: 9502ca085592283dd8aa5d2b3ed2267fb97561bb

56f398bd

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 1 year ago

Former-commit-id: 2a7d68dbecbb5d9bcf4dd54707c676e02ecc94d9
Former-commit-id: f542b934c7850ced9eb6bb245040b60a801cdf19

bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06

Arnaud Duvermy authored 1 year ago

Former-commit-id: 6f67fe5a822a936b61299d225c967880a1a0be09
Former-commit-id: 3c65811b477757c13fbeed89e0cefeac6fd283d5

dcf4ac06

Mar 14, 2024
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
Jan 24, 2024
- rebuild packg modifying seqDepth scaling method · 32ef0d7f
  Arnaud Duvermy authored 1 year ago
  
  32ef0d7f
Jan 12, 2024
- commit before merging branch · feb122dd
  Arnaud Duvermy authored 1 year ago
  
  feb122dd
Jan 11, 2024
- modif computing AUC · 63eb9683
  Arnaud Duvermy authored 1 year ago
  
  63eb9683
Dec 18, 2023
- v2.0.0 beta - memory optim + add metrics performances · 933a37de
  Arnaud Duvermy authored 1 year ago
  
  933a37de
Nov 22, 2023
- fitModelParallel memory optimization · 9b37e16e
  Arnaud Duvermy authored 1 year ago
  
  9b37e16e
Oct 26, 2023
- fix issues with writing the 'group' information in log files during model update · f664caec
  Arnaud Duvermy authored 1 year ago
  
  f664caec
- improve log file managment · 89a84395
  Arnaud Duvermy authored 1 year ago
  
  89a84395
- reorganized R files · 0e72a391
  Arnaud Duvermy authored 1 year ago
  
  0e72a391
Oct 18, 2023
- init v1.0.0 · 807896a7
  Arnaud Duvermy authored 1 year ago
  
  807896a7