Commits · 21a272aa943b6689094e52587df68ecf1b170839 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

May 06, 2024

Arnaud Duvermy authored 10 months ago

Former-commit-id: 3f7aa61eb30ba38cbdbb9e27ccc51979cb4facb9
Former-commit-id: 2ead326eb6e62735fc232920ed394382bd870d8f
Former-commit-id: 3ada0232a043727a55604732490cc14cb4abd38d

21a272aa

May 03, 2024

update v2.0.9 · b5d4fbe5

Arnaud Duvermy authored 10 months ago

Former-commit-id: 0a73d383a0c9ee384a18673604903c9b9f3f5369
Former-commit-id: e47a43d5e8eb866b5719dd2d835b9a741ba40fd4
Former-commit-id: d2d8a8d5bbc17cb201f64ab3090fc6b020cf4161

b5d4fbe5

Apr 29, 2024

fix test · 14537248

Arnaud Duvermy authored 10 months ago

Former-commit-id: 329432b48aeece460f8dd2d1ecfc84da4efc8094
Former-commit-id: 8137b890cbfd3800d051d4d5a2a3ba7ab5daf41b
Former-commit-id: 93804fd781c9fea877e8130699267738e906d730

14537248

Apr 26, 2024

add violin and enhance plot · bdb0ac05

Arnaud Duvermy authored 10 months ago

Former-commit-id: 00e7169583ef18f3493d1143bb6fa1cc48032271
Former-commit-id: 192bbb0e78b026c388d131a7eca34c250a20e057
Former-commit-id: 43c9ec2ee9a6fd20e6536327e7515416ff56876c

bdb0ac05

Apr 24, 2024

fix test error · 783b32e4

Arnaud Duvermy authored 10 months ago

Former-commit-id: 26987ea237645be2ad81e9cd47797608f49bb169
Former-commit-id: be0e46e1010b2483054c095194b844b1b4dec8da
Former-commit-id: 1ebd4532ef4c1e4bafb163d227a537ee9d5a6f1d

783b32e4

use_initial_random_params · ed7d8d28

Arnaud Duvermy authored 10 months ago

Former-commit-id: 7ac85269e3fa2747fc5210eabc844a3bedd6759a
Former-commit-id: 8e4133476f2614d3371895c5a8db4ad4a8fb065c
Former-commit-id: 86f37611dbe31a4bcedcd134ae0d5c7a5f99238b

ed7d8d28

Apr 11, 2024

fix test · a86a44e3

Arnaud Duvermy authored 11 months ago

Former-commit-id: 8a325b3deab45db9b69ae9e7d8da7ed731ad39b0
Former-commit-id: f31c7b889e7807bf22ce09027cd7a7adb8b3fd31
Former-commit-id: 586122716d9c7e72b95161f13a4c4ba26935329b

a86a44e3

minor changes · 4ad196d0

Arnaud Duvermy authored 11 months ago

Former-commit-id: b11fcb9c57c98202f80364ccebac5e8b96c61cb0
Former-commit-id: 14dd0daeb2c6c962360d4ed50b8dc5318542088c
Former-commit-id: f25d3accb9ec6730621c0d532e995f71a8622b88

4ad196d0

add ability to combine mock obj · ca65a361

Arnaud Duvermy authored 11 months ago

Former-commit-id: 2a636c88881bc0466afb7c71438b2b4dd44b062f
Former-commit-id: b685e4b01275a4c06316c731a96215e27eda2d69
Former-commit-id: a5f9dbc6bf9e17d6b9d50030b50de463744dae95

ca65a361

fix error test · c698e405

Arnaud Duvermy authored 11 months ago

Former-commit-id: ffc13e80f1415a29a232b7db35f6095f7c10d136
Former-commit-id: d6c0bcf213cc121d905b41a650b8faed3765dbb2
Former-commit-id: 2c766edc0e5d263629f237222a012f49a3b99c61

c698e405

Apr 05, 2024

normal_distrib = 'univariate' as default behavior · a9f24445

Arnaud Duvermy authored 11 months ago

Former-commit-id: 702392f90154be2cfa1b9290a268c7043a2640ea
Former-commit-id: 6fc27d8a3326e5b470155c5f647fcbd1d6f40f83
Former-commit-id: 1e4392d3ae9eb809adbdd073ddd9afbd3c592a67

a9f24445

Apr 04, 2024

fix tests · 6561800c

Arnaud Duvermy authored 11 months ago

Former-commit-id: 4ba5a003965c20df712f088d6f3a89ea776ffc11
Former-commit-id: b0d4d24146e11e5a3b871c39829aea2bd7e8c9e0
Former-commit-id: 1b73f7bc35e72c3ac1d5bd6e11144a6d698724b8

6561800c

fix tests errors · aeb54e21

Arnaud Duvermy authored 11 months ago

Former-commit-id: 94d6e892f6e46b83a8c1c9d998ca36c46fb965fa
Former-commit-id: 2c645ac4a92e7ed8c9843c885f92a958b2c9d1bd
Former-commit-id: 9ce017e53bc7415f52e88bb171644af8bd1ca74e

aeb54e21

fix pb with test and add embedded public files · 37fc3633

Arnaud Duvermy authored 11 months ago

Former-commit-id: 3049c572dc1f37b54509e8c8183ad57d99977458
Former-commit-id: 211cc291550a72be0a1384b611ec45e895a8f863
Former-commit-id: 8f980ecc03a8d2e396a3792e5f0624ead3e1b3f9

37fc3633

mu hided for user exp · b1d48967

Arnaud Duvermy authored 11 months ago

Former-commit-id: 56250a80365d410770eb3dd038abe0e4b6e0d1d7
Former-commit-id: 79d7ca4c3bb2f1ed291d428b31ff5050cce2235c
Former-commit-id: a5d2468176136bf03843ea163e98657e6450988a

b1d48967

add functions for exporting · 90905d87

Arnaud Duvermy authored 11 months ago

Former-commit-id: aebe213398852ad1cc9366bdcc87e12a81f07625
Former-commit-id: 067c1926388a4461b32f9db5eaa3b3f196033c4e
Former-commit-id: 12c73aeae5732acb043eda3d49914dd0d74152a6

90905d87

Apr 03, 2024

fix test · 7cfdc833

Arnaud Duvermy authored 11 months ago

Former-commit-id: 262374deb51a32a578c89586da353e876a301b15
Former-commit-id: 6d25e2a85d8fad03e316f9678bebd8c9cc52e78e
Former-commit-id: 28a1c5b7beed4d870b7bd00de368fe0f53eda804

7cfdc833

fix test · 30416dda

Arnaud Duvermy authored 11 months ago

Former-commit-id: cd18d76d32100e93e5dc154c4c948f0938382d05
Former-commit-id: c695a50918d6a90c8dc802e4c6744345d93105d4
Former-commit-id: 6000c231dfb8ebb516f157ef8c57ee789c9e6610

30416dda

Apr 02, 2024

replaceReferenceValuesBy0 to replaceUnexpectedInteractionValuesBy0 · 9ecf7a07

Arnaud Duvermy authored 11 months ago

Former-commit-id: 3d1616f47a0101f072a842aa8a201f740cb56a95
Former-commit-id: 659b9a4da97ef9e0dc4b06efec0c7d9f96db51ac
Former-commit-id: ce23e5aa1f9b3316028717f17e31e1aa62424d17

9ecf7a07

fix test · dcfbc2d0

Arnaud Duvermy authored 11 months ago

Former-commit-id: d8362e82a003010e017231a34bc9afc778a355d7
Former-commit-id: 5f7e515ab0679a7d5c8813f4af1d83585f34732d
Former-commit-id: acf5bff1e6133d8faa8c8dc01e37678e7cbe58ca

dcfbc2d0

Mar 27, 2024

fix pb when increasing sd(interaction) · 54db8373

Arnaud Duvermy authored 11 months ago

Former-commit-id: 691599107b45462e7a4493365a6a9b16c55d35b5
Former-commit-id: 1c55d2d303f5a119605f3f6c667510b553e29208
Former-commit-id: aaa06595a264927a966dae23b24beadb8ae9b479

54db8373

Mar 26, 2024

add fix_reference_effect parameter and utils · 56f398bd

Arnaud Duvermy authored 11 months ago

Former-commit-id: 9d73431e71bc99d4ad7e6ad1ce8d0877db320447
Former-commit-id: 52edbac846370096cf86ff60c723a1937956e284
Former-commit-id: 9502ca085592283dd8aa5d2b3ed2267fb97561bb

56f398bd

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 1 year ago

Former-commit-id: 2a7d68dbecbb5d9bcf4dd54707c676e02ecc94d9
Former-commit-id: f542b934c7850ced9eb6bb245040b60a801cdf19

bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06

Arnaud Duvermy authored 1 year ago

Former-commit-id: 6f67fe5a822a936b61299d225c967880a1a0be09
Former-commit-id: 3c65811b477757c13fbeed89e0cefeac6fd283d5

dcf4ac06

Mar 14, 2024
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
Jan 24, 2024
- rebuild packg modifying seqDepth scaling method · 32ef0d7f
  Arnaud Duvermy authored 1 year ago
  
  32ef0d7f
Jan 12, 2024
- commit before merging branch · feb122dd
  Arnaud Duvermy authored 1 year ago
  
  feb122dd
Jan 11, 2024
- modif computing AUC · 63eb9683
  Arnaud Duvermy authored 1 year ago
  
  63eb9683
Dec 18, 2023
- v2.0.0 beta - memory optim + add metrics performances · 933a37de
  Arnaud Duvermy authored 1 year ago
  
  933a37de
Nov 22, 2023
- fitModelParallel memory optimization · 9b37e16e
  Arnaud Duvermy authored 1 year ago
  
  9b37e16e
Oct 26, 2023
- fix issues with writing the 'group' information in log files during model update · f664caec
  Arnaud Duvermy authored 1 year ago
  
  f664caec
- improve log file managment · 89a84395
  Arnaud Duvermy authored 1 year ago
  
  89a84395
- reorganized R files · 0e72a391
  Arnaud Duvermy authored 1 year ago
  
  0e72a391
Oct 18, 2023
- init v1.0.0 · 807896a7
  Arnaud Duvermy authored 1 year ago
  
  807896a7