Commits · 044676a269a67f81016ddb0c75d8e58a6aa08eb6 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

"src/nf_modules/Bowtie/tests/index.nf" did not exist on "705226a9482733c67c18c799cfe394cf7af2ecda"

Apr 04, 2024

fix example · 044676a2

Arnaud Duvermy authored 11 months ago

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044676a2

fix tests · 6561800c

Arnaud Duvermy authored 11 months ago

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6561800c

fix tests errors · aeb54e21

Arnaud Duvermy authored 11 months ago

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aeb54e21

fix pb with test and add embedded public files · 37fc3633

Arnaud Duvermy authored 11 months ago

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37fc3633

Rd modifications · 475b26ec

Arnaud Duvermy authored 11 months ago

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475b26ec

add functions for exporting · 90905d87

Arnaud Duvermy authored 11 months ago

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90905d87

Apr 03, 2024

sd_env and sd_intercept splitted in description · 6676f52a

Arnaud Duvermy authored 11 months ago

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6676f52a

fix test · 7cfdc833

Arnaud Duvermy authored 11 months ago

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7cfdc833

modif error message · ccc83cd0

Arnaud Duvermy authored 11 months ago

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ccc83cd0

Apr 02, 2024

replaceReferenceValuesBy0 to replaceUnexpectedInteractionValuesBy0 · 9ecf7a07

Arnaud Duvermy authored 11 months ago

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9ecf7a07

rm unexpected var · 9ce1e8c3

Arnaud Duvermy authored 11 months ago

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9ce1e8c3

add check for <countMatrix> and <metadata> dimensions · 8b076378

Arnaud Duvermy authored 11 months ago

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8b076378

Mar 27, 2024

fix pb when increasing sd(interaction) · 54db8373

Arnaud Duvermy authored 11 months ago

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54db8373

Mar 26, 2024

add fix_reference_effect parameter and utils · 56f398bd

Arnaud Duvermy authored 11 months ago

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56f398bd

Mar 25, 2024

fix pb with interaction in get_effects_from_rnorm · b299e9c2

Arnaud Duvermy authored 11 months ago

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b299e9c2

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 1 year ago

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bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06

Arnaud Duvermy authored 1 year ago

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dcf4ac06

Mar 14, 2024
- rearrange rocr classes · 0542b1c4
  Arnaud Duvermy authored 1 year ago
  
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  0542b1c4
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to calculate performance_ratio · 736fc449
  Arnaud Duvermy authored 1 year ago
  
  736fc449
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- rm warning · 77011791
  Arnaud Duvermy authored 1 year ago
  
  77011791
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
- GPL3 licence + test coverage in CI · 3074832e
  Arnaud Duvermy authored 1 year ago
  
  3074832e
Jan 23, 2024
- enhance visual on webpage · 21ccc353
  Arnaud Duvermy authored 1 year ago
  
  21ccc353
Jan 22, 2024
- add extdata + modif seqDepth control + reshape website · d6ab1626
  Arnaud Duvermy authored 1 year ago
  
  d6ab1626
Jan 17, 2024
- try relaunch CI · c051b515
  Arnaud Duvermy authored 1 year ago
  
  c051b515
Jan 12, 2024
- commit before merging branch · feb122dd
  Arnaud Duvermy authored 1 year ago
  
  feb122dd
Jan 11, 2024
- update vignette · 4e82e786
  Arnaud Duvermy authored 1 year ago
  
  4e82e786
- modif computing AUC · 63eb9683
  Arnaud Duvermy authored 1 year ago
  
  63eb9683
Jan 10, 2024
- backup before lot of change for ROC/PR curves · 8884f332
  Arnaud Duvermy authored 1 year ago
  
  8884f332
Dec 18, 2023
- v2.0.0 beta - memory optim + add metrics performances · 933a37de
  Arnaud Duvermy authored 1 year ago
  
  933a37de
Nov 22, 2023
- fitModelParallel memory optimization · 9b37e16e
  Arnaud Duvermy authored 1 year ago
  
  9b37e16e
Oct 26, 2023
- Fix NOTE "no visible binding for global variable" linked to ggplot2 · aca04dec
  Arnaud Duvermy authored 1 year ago
  
  aca04dec
- fix issues with writing the 'group' information in log files during model update · f664caec
  Arnaud Duvermy authored 1 year ago
  
  f664caec
- remove unexpected files · e4701c33
  Arnaud Duvermy authored 1 year ago
  
  e4701c33
- improve log file managment · 89a84395
  Arnaud Duvermy authored 1 year ago
  
  89a84395