Commits · 00ec14ba46d460d6c0467913d32a662dbbe5a1f8 · LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit

Mar 25, 2024

fix message info genes counts bellow_threshold · 00ec14ba

Arnaud Duvermy authored 1 year ago

Former-commit-id: 2ed2a843ffdbbbfa3ec776f680b64d984d2820bb
Former-commit-id: 6b71038e295cdf928de3c50bbf20f662b6a08e86
Former-commit-id: 8b0724d579460dbe992e11c6fba60a693d77da75

00ec14ba

Mar 20, 2024

add RMSE values in report_evaluation · bd9f3b58

Arnaud Duvermy authored 1 year ago

Former-commit-id: 2a7d68dbecbb5d9bcf4dd54707c676e02ecc94d9
Former-commit-id: f542b934c7850ced9eb6bb245040b60a801cdf19

bd9f3b58

add warnings, row_threshold for filtering, univariate simulation · dcf4ac06

Arnaud Duvermy authored 1 year ago

Former-commit-id: 6f67fe5a822a936b61299d225c967880a1a0be09
Former-commit-id: 3c65811b477757c13fbeed89e0cefeac6fd283d5

dcf4ac06

Mar 14, 2024
- rearrange rocr classes · 0542b1c4
  Arnaud Duvermy authored 1 year ago
  
  Former-commit-id: a576601408ea35fe94f2ee9247af4cf75935e192
  0542b1c4
- missing file · e3ae7b8e
  Arnaud Duvermy authored 1 year ago
  
  e3ae7b8e
- isValidObj functions + enhance usr exp of evaluation_report function · f1f849d1
  Arnaud Duvermy authored 1 year ago
  
  f1f849d1
- add funtion to identify top fit · 17dbe24f
  Arnaud Duvermy authored 1 year ago
  
  17dbe24f
Mar 13, 2024
- ability to calculate performance_ratio · 736fc449
  Arnaud Duvermy authored 1 year ago
  
  736fc449
- ability to transform counts before fitting · 45835884
  Arnaud Duvermy authored 1 year ago
  
  45835884
- relevelling ability · 4d4c7adc
  Arnaud Duvermy authored 1 year ago
  
  4d4c7adc
Jan 30, 2024
- fix error DESeq - too small counts simulated · 27a4af4c
  Arnaud Duvermy authored 1 year ago
  
  27a4af4c
Jan 29, 2024
- add tests and examples · 67d96c8b
  Arnaud Duvermy authored 1 year ago
  
  67d96c8b
Jan 24, 2024
- rebuild packg modifying seqDepth scaling method · 32ef0d7f
  Arnaud Duvermy authored 1 year ago
  
  32ef0d7f
Jan 23, 2024
- enhance visual on webpage · 21ccc353
  Arnaud Duvermy authored 1 year ago
  
  21ccc353
Jan 22, 2024
- add extdata + modif seqDepth control + reshape website · d6ab1626
  Arnaud Duvermy authored 1 year ago
  
  d6ab1626
Jan 12, 2024
- commit before merging branch · feb122dd
  Arnaud Duvermy authored 1 year ago
  
  feb122dd
Jan 11, 2024
- modif computing AUC · 63eb9683
  Arnaud Duvermy authored 1 year ago
  
  63eb9683
Dec 18, 2023
- v2.0.0 beta - memory optim + add metrics performances · 933a37de
  Arnaud Duvermy authored 1 year ago
  
  933a37de
Nov 22, 2023
- fitModelParallel memory optimization · 9b37e16e
  Arnaud Duvermy authored 1 year ago
  
  9b37e16e
Oct 26, 2023
- Fix NOTE "no visible binding for global variable" linked to ggplot2 · aca04dec
  Arnaud Duvermy authored 1 year ago
  
  aca04dec
- fix issues with writing the 'group' information in log files during model update · f664caec
  Arnaud Duvermy authored 1 year ago
  
  f664caec
- improve log file managment · 89a84395
  Arnaud Duvermy authored 1 year ago
  
  89a84395
- reorganized R files · 0e72a391
  Arnaud Duvermy authored 1 year ago
  
  0e72a391
Oct 24, 2023
- modif order params · 3c379836
  Arnaud Duvermy authored 1 year ago
  
  3c379836
- density to histogram · 8136521a
  Arnaud Duvermy authored 1 year ago
  
  8136521a
- modif identity plot & disp_plot · 78bb8521
  Arnaud Duvermy authored 1 year ago
  
  78bb8521
- add xlab/ylab · d6bd2792
  Arnaud Duvermy authored 1 year ago
  
  d6bd2792
Oct 18, 2023
- init v1.0.0 · 807896a7
  Arnaud Duvermy authored 1 year ago
  
  807896a7