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Commit 5065993b authored by Arnaud Duvermy's avatar Arnaud Duvermy
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update readme

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......@@ -159,6 +159,15 @@ p <- diagnostic_plot(list_tmb = l_tmb)
The diagnostic metrics show that the fit is not as good for all genes.
### Extracts a tidy result table from a list tmb object
The tidy_results function extracts a dataframe containing estimates of ln(fold changes), standard errors, test statistics, p-values, and adjusted p-values for fixed effects. Additionally, it provides access to correlation terms and standard deviations for random effects, offering a detailed view of HTRfit modeling results.
```
## -- get tidy results
tidy_res <- tidy_results(l_tmb, coeff_threshold = 0.1, alternative_hypothesis = "greater")
```
### Evaluation
```
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