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Commit 3a22b654 authored by Arnaud Duvermy's avatar Arnaud Duvermy
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update readme

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......@@ -179,7 +179,7 @@ mock_data <- mock_rnaseq(input_var_list,
data2fit = prepareData2fit(countMatrix = mock_data$counts,
metadata = mock_data$metadata,
normalization = F)
l_tmb <- fitModelParallel(formula = kij ~ varB + (varB | varA),
l_tmb <- fitModelParallel(formula = kij ~ varA + varB + varA:varB,
data = data2fit,
group_by = "geneID",
family = glmmTMB::nbinom2(link = "log"),
......@@ -197,7 +197,7 @@ dds <- DESeq2::DESeq(dds, quiet = TRUE)
## -- get simulation/fit evaluation
resSimu <- evaluation_report(list_tmb = l_tmb,
dds_obj = dds,
dds = dds,
mock_obj = mock_data,
coeff_threshold = 0.4,
alt_hypothesis = "greaterAbs")
......
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