NEWS.md

CHANGES IN HTRfit VERSION 2.0.0

• Improved Documentation: Clearer and more comprehensive information on HTRfit functionalities and usage.
• Additional Metrics: Added PR curve, precision, recall, accuracy, and R2 for enhanced model evaluation.
• Reduced Dependencies: Streamlined installation by removing the need for plotROC.

CHANGES IN HTRfit VERSION 1.0.2

• R files reorganization, log file enhancement and versioning
• R files have been restructured to enhance clarity.
• The log file location has been relocated to the R temporary directory.
• A bug that was causing issues with writing the 'group' information in log files during model update has been fixed.
• Fix NOTE "no visible binding for global variable" linked to ggplot2
• Fix bug with packageVersion("HTRfit")

CHANGES IN HTRfit VERSION 1.0.1

• The metrics_plot function has been updated to display histograms instead of density plots.
• The identity plot's point shape has been modified, enhancing the visual clarity of comparisons between HTRfit and DESeq2 results.
• Similar to the identity plot, the dispersion plot also benefits from improved point shape, contributing to a more effective visual analysis.
• Add xlab/ylab to ROC plot
• The vignette section now includes a new topic, "About mixed model evaluation".

CHANGES IN HTRfit VERSION 1.0.0

• End of core development, Ready for beta testing
• The functions, tests, and vignettes are fully functional and operational!
• To do: 1) conducting installation tests , 2) seeking out beta testers for further evaluation.