NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%>%")
export(addBasalExpression)
export(add_interaction)
export(already_init_variable)
export(anovaParallel)
export(averageByGroup)
export(build_missingColumn_with_na)
export(calculate_actualMixed)
export(calculate_actual_interactionX2_values)
export(calculate_actual_interactionX3_values)
export(check_input2interaction)
export(clean_variable_name)
export(compareInferenceToExpected)
export(computeActualInteractionFixEff)
export(compute_covariation)
export(convert2Factor)
export(correlation_matrix_2df)
export(countMatrix_2longDtf)
export(counts_plot)
export(dispersion_plot)
export(drop_randfx)
export(endsWithDigit)
export(evaluateDispersion)
export(exportReportFile)
export(extract_ddsDispersion)
export(extract_fixed_effect)
export(extract_ran_pars)
export(extract_tmbDispersion)
export(fillInCovarMatrice)
export(fillInInteraction)
export(fillInVariable)
export(filter_dataframe)
export(findAttribute)
export(fitModel)
export(fitModelParallel)
export(fitUpdate)
export(generateActualForMainFixEff)
export(generateActualInteractionX2_FixEff)
export(generateActualInteractionX3_FixEff)
export(generateCountTable)
export(generateGridCombination_fromListVar)
export(generateReplicationMatrix)
export(generate_basal_expression)
export(getActualInteractionFixEff)
export(getActualIntercept)
export(getActualMainFixEff)
export(getActualMixed_typeI)
export(getBinExpression)
export(getCategoricalVar_inFixedEffect)
export(getCoefficients)
export(getColumnWithSampleID)
export(getCovarianceMatrix)
export(getData2computeActualFixEffect)
export(getDataFromMvrnorm)
export(getDataFromUser)
export(getDispersionComparison)
export(getDispersionMatrix)
export(getEstimate_df)
export(getGeneMetadata)
export(getGivenAttribute)
export(getGlance)
export(getGridCombination)
export(getGrobTable)
export(getInput2mvrnorm)
export(getInput2simulation)
export(getLabelExpected)
export(getLabels)
export(getListVar)
export(getLog_qij)
export(getMu_ij)
export(getMu_ij_matrix)
export(getNumberOfCombinationsInInteraction)
export(getReplicationMatrix)
export(getSE_df)
export(getSampleID)
export(getSampleMetadata)
export(getSettingsTable)
export(getStandardDeviationInCorrelation)
export(getTidyGlmmTMB)
export(getValidDispersion)
export(get_inference_dds)
export(glance_tmb)
export(group_logQij_per_genes_and_labels)
export(handleAnovaError)
export(identity_plot)
export(inferenceToExpected_withFixedEff)
export(inferenceToExpected_withMixedEff)
export(init_variable)
export(inputs_checking)
export(isValidInput2fit)
export(is_dispersionMatrixValid)
export(is_formula_mixedTypeI)
export(is_fullrank)
export(is_mixedEffect_inFormula)
export(is_positive_definite)
export(join_dtf)
export(launchFit)
export(launchUpdate)
export(medianRatioNormalization)
export(metrics_plot)
export(mock_rnaseq)
export(parallel_fit)
export(parallel_update)
export(prepareData2computeInteraction)
export(prepareData2fit)
export(removeDigitsAtEnd)
export(removeDuplicatedWord)
export(renameColumns)
export(reorderColumns)
export(replicateByGroup)
export(replicateMatrix)
export(replicateRows)
export(roc_plot)
export(samplingFromMvrnorm)
export(scaleCountsTable)
export(set_correlation)
export(simulationReport)
export(subsetByTermLabel)
export(subsetData_andfit)
export(subsetFixEffectInferred)
export(subsetGenes)
export(subset_glance)
export(tidy_results)
export(tidy_tmb)
export(updateParallel)
export(wald_test)
export(wrap_dds)
export(wrapper_var_cor)
importFrom(MASS,mvrnorm)
importFrom(car,Anova)
importFrom(data.table,data.table)
importFrom(data.table,setDT)
importFrom(data.table,setorderv)
importFrom(data.table,tstrsplit)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,sym)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(gridExtra,tableGrob)
importFrom(gridExtra,ttheme_minimal)
importFrom(magrittr,"%>%")
importFrom(plotROC,geom_roc)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(rlang,":=")
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,drop.terms)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,rnbinom)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(utils,tail)