Commit cbb2626e authored by Xavier Grand's avatar Xavier Grand
Browse files

RNAseq_XGR.nf STAR mapping OK

parent 3f510560
......@@ -101,9 +101,9 @@ Channel
*/
fastqc_mod = "./nf_modules/fastqc/main.nf"
include { fastqc_fastq as fastqc_raw } from fastqc_mod addParams(fastqc_fastq_out: "$params.project/01_fastqc_raw/")
include { fastqc_fastq as fastqc_preprocessed } from fastqc_mod addParams(fastqc_fastq_out: "$params.project/02_fastqc_preprocessed/")
include { multiqc } from './nf_modules/multiqc/main.nf' addParams(multiqc_out: "$params.project/QC/")
include { fastqc_fastq as fastqc_raw } from fastqc_mod addParams(fastqc_fastq_out: "01_fastqc_raw/")
include { fastqc_fastq as fastqc_preprocessed } from fastqc_mod addParams(fastqc_fastq_out: "02_fastqc_preprocessed/")
include { multiqc } from './nf_modules/multiqc/main.nf' addParams(multiqc_out: "QC/")
include { fastp } from "./nf_modules/fastp/main.nf"
include { index_with_gtf } from "./nf_modules/star/main_2.7.8a.nf"
include { mapping_fastq } from "./nf_modules/star/main_2.7.8a.nf"
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment