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LBMC
ReGArDS
nextflow
Commits
cbb2626e
Commit
cbb2626e
authored
Jul 28, 2022
by
Xavier Grand
Browse files
RNAseq_XGR.nf STAR mapping OK
parent
3f510560
Changes
1
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src/RNAseq_XGR.nf
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cbb2626e
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@@ -101,9 +101,9 @@ Channel
*/
fastqc_mod = "./nf_modules/fastqc/main.nf"
include { fastqc_fastq as fastqc_raw } from fastqc_mod addParams(fastqc_fastq_out: "
$params.project/
01_fastqc_raw/")
include { fastqc_fastq as fastqc_preprocessed } from fastqc_mod addParams(fastqc_fastq_out: "
$params.project/
02_fastqc_preprocessed/")
include { multiqc } from './nf_modules/multiqc/main.nf' addParams(multiqc_out: "
$params.project/
QC/")
include { fastqc_fastq as fastqc_raw } from fastqc_mod addParams(fastqc_fastq_out: "01_fastqc_raw/")
include { fastqc_fastq as fastqc_preprocessed } from fastqc_mod addParams(fastqc_fastq_out: "02_fastqc_preprocessed/")
include { multiqc } from './nf_modules/multiqc/main.nf' addParams(multiqc_out: "QC/")
include { fastp } from "./nf_modules/fastp/main.nf"
include { index_with_gtf } from "./nf_modules/star/main_2.7.8a.nf"
include { mapping_fastq } from "./nf_modules/star/main_2.7.8a.nf"
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