Commit c46cb388 authored by Xavier Grand's avatar Xavier Grand
Browse files

Modif Channel idx_genome.

parent 4ff434d0
......@@ -160,11 +160,11 @@ workflow {
// ref_13 = Channel.fromPath(params.idx +'/transcriptInfo.tab')
// ref_14 = Channel.fromPath(params.idx +'/sjdbList.fromGTF.out.tab')
// ref_15 = Channel.fromPath(params.idx +'/sjdbList.out.tab')
// genome_indexed_input = ref_1.concat(ref_2,ref_3,ref_4,ref_5,ref_6,ref_7,ref_8,ref_9,ref_10,ref_11,ref_12,ref_13,ref_14,ref_15)
// Channel
// .of( idx_genome )
// .set { genome_indexed_input }
Channel
.fromPath( "${params.idx}/*" )
.set { genome_indexed_input }
mapping_withindex(idx_genome, fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
filter_bam_mapped(mapping_withindex.out.bam)
......
......@@ -193,7 +193,7 @@ process mapping_withindex {
}
input:
val(index)
path(index)
tuple val(reads_id), path(reads)
output:
......
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