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Verified Commit 6b6d059a authored by Laurent Modolo's avatar Laurent Modolo
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example_marseq.nf: cosmetic changes

parent 8d92ac19
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...@@ -62,10 +62,26 @@ channel ...@@ -62,10 +62,26 @@ channel
workflow { workflow {
adaptor_removal(fastq_files) adaptor_removal(fastq_files)
if (params.workflow_type == "classic") { if (params.workflow_type == "classic") {
index_fasta(fasta_files, gtf_files) index_fasta(
count(index_fasta.out.index, adaptor_removal.out.fastq, index_fasta.out.t2g, whitelist_files, config_files) fasta_files,
gtf_files
)
count(
index_fasta.out.index,
adaptor_removal.out.fastq,
index_fasta.out.t2g, whitelist_files,config_files
)
} else { } else {
index_fasta_velocity(fasta_files, gtf_files) index_fasta_velocity(
count_velocity(index_fasta_velocity.out.index, adaptor_removal.out.fastq, index_fasta_velocity.out.t2g, whitelist_files, config_files) fasta_files,
gtf_files
)
count_velocity(
index_fasta_velocity.out.index,
adaptor_removal.out.fastq,
index_fasta_velocity.out.t2g,
whitelist_files,
config_files
)
} }
} }
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