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LBMC
ReGArDS
nextflow
Commits
59f8cb0a
Verified
Commit
59f8cb0a
authored
Feb 10, 2021
by
Laurent Modolo
Browse files
nf_modules: add ucsc bg to bw fix output
parent
b16d01fc
Changes
1
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src/nf_modules/ucsc/main.nf
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59f8cb0a
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@@ -11,10 +11,11 @@ process bedgraph_to_bigwig {
tuple val(file_id) path(bed)
output:
tuple val(file_id), path("*.bw"), emit:
fasta
tuple val(file_id), path("*.bw"), emit:
bw
script:
"""
LC_COLLATE=C
# transform bed file of start-stop chromosome size to stop chromosome size
awk -v OFS="\\t" '{print \$1, \$3}' ${bed} > chromsize.txt
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