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Verified Commit 3da0a73c authored by Laurent Modolo's avatar Laurent Modolo
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kallisto: indexing config sh conda env instead of source

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src/nf_modules/kallisto/indexing.config
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...@@ -50,7 +50,7 @@ profiles { ...@@ -50,7 +50,7 @@ profiles {
ccin2p3_conda { ccin2p3_conda {
process{ process{
withName: index_fasta { withName: index_fasta {
beforeScript = "source /sps/lbmc/common/miniconda3/init.sh" beforeScript = "sh /sps/lbmc/common/miniconda3/init.sh"
conda = "/sps/lbmc/common/miniconda3/envs/kallisto_0.44.0" conda = "/sps/lbmc/common/miniconda3/envs/kallisto_0.44.0"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
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