Commits · master · LBMC / ReGArDS / DESeq2-wrapper · GitLab

Snippets Groups Projects

Jul 31, 2025
- R/parser.R R/load_matrix.R: changes in order to support featureCounts matrix file · 759e8d42
  nfontrod authored 2 weeks ago
  
  759e8d42
Mar 11, 2024
- changes to handle kallisto inputs · cfca5f87
  nfontrod authored Mar 11, 2024
  
  cfca5f87
Oct 18, 2023
- add --norm parameter · f27b7bde
  nfontrod authored Oct 18, 2023
  
  f27b7bde
Sep 28, 2023
- Add norm to be able to use CPM normalisation: It's NOT advised to do CPM normalisation · f86c33b1
  nfontrod authored Sep 28, 2023
  
  f86c33b1
Sep 26, 2023
- R/load_matrix.R: fix batch effect column handling · cfcbc0be
  nfontrod authored Sep 26, 2023
  
  cfcbc0be
Jul 05, 2023
- fix load_matrix function · 07fb22d6
  nfontrod authored Jul 5, 2023
  
  07fb22d6
Jun 21, 2023
- R/load_matrix.R: fix find_file messages · 0cd9674a
  nfontrod authored Jun 21, 2023
  
  0cd9674a
- R/load_matrix.R: remove prints · 974b21ea
  nfontrod authored Jun 21, 2023
  
  974b21ea
- R/load_matrix.R DESCRIPTION Readme.md: the input matrix has now a column... · 547ff6b8
  nfontrod authored Jun 21, 2023
  547ff6b8
- R/load_matrix.R: add find_file function to automatically find files bassed on a prefix · 0b05826f
  nfontrod authored Jun 21, 2023
  
  0b05826f
May 04, 2023
- R/load_matrix.R: fix the non usage of min_expression variable · 31a4434d
  nfontrod authored May 4, 2023
  
  31a4434d
Sep 15, 2022
- Add optionnal parameter --gene_names -c <tab.tsv>, correspondance gene_ID/gene_name · a5cbc9f1
  Xavier Grand authored Sep 15, 2022
  
  a5cbc9f1
Jul 15, 2022
- R/load_matrix.R: small change in filter_dds to make the package able to take a... · 027e8413
  nfontrod authored Jul 15, 2022
  027e8413
Jul 13, 2022
- R/load_matrix.R: add return data to build_count_matrices · bcdd0d91
  nfontrod authored Jul 13, 2022
  
  bcdd0d91
Jul 12, 2022
- R/load_matrix.R: fix load_matrix function · 08188ba4
  nfontrod authored Jul 12, 2022
  
  08188ba4
- R/main.R, R/load_matrix.R, R/differiential_expression.R: change usage for the run_deseq2 function · 7b301fe5
  nfontrod authored Jul 12, 2022
  
  7b301fe5
Jul 05, 2022
- initial commit · 455770f8
  nfontrod authored Jul 5, 2022
  
  455770f8