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Created with Raphaël 2.2.017Nov16151027Oct2528Sep221413118Aug27Jul181313Jun830May251795229Apr282622211531Mar181542128Feb2523161514111026Jan2524212019131176Dec15Nov12985229Oct251121Sep1716131Aug1913927Jul242221191716151413129876532129Jun2216141198312May107430Apr292323Mar19225Feb22179852127Jan25222120191815131275417Dec1627Nov2625242320191716629Oct28272625Sep24177Aug415Jul1063130Jun2625231918171210910Apr9627Mar2611109src/figures_utils/pca_reduction_dimension.py: initial commit of this script that allows to produce PCA analysis, with the impact of FT regulation and the percentage of Ssrc/find_interaction_cluster/divide_communities.py: change to produce figure indicating the number of community and the number of genes inside splited community files by GC contentsrc/find_interaction_cluster/config.py: change the htype parameter to producte freq and pvalue heatmapsrc/find_interaction_cluster/Heatmap_composition/compo_heatmap.py: changes of available color scalessrc/find_interaction_cluster/Heatmap_composition/permutation.py: change to always make a two sided test if the aggregation function is not meansrc/figures_utils/study_of_gene_pair_interactions.py: fix import of stat_annotsrc/find_interaction_cluster/nt_and_community.py: the community_file argument can now take a string indicating whether to created sigmoide figure displaying communities, Transcription factors or splicing factorssrc/find_interaction_cluster/divide_communities.py: add custom splitMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devsrc/find_interaction_cluster/divide_communities.py: split community files in samller files based on gc content of communitiessrc/db_utils/db_creation.py: deletion of trailing spacessrc/db_utils/frequency_scripts/config_freq.py: add k and m in nucleotide listsrc/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: removing diaa insertion in databasesrc/find_interaction_cluster/Heatmap_composition/__main__.py: add Med_CMT option for ctrl argumentssrc/find_interaction_cluster/Heatmap_composition/compo_heatmap.py: add a new control Med_CMT to be able to create heatmap corresponding to the median of median a feature frequency for communitiessrc/find_interaction_cluster/Heatmap_composition/frequency.py: add a function add_special_frequency_columnssrc/find_interaction_cluster/community_figures/fig_functions.py: add fontsizesrc/find_interaction_cluster/config.py: add ConfigSplit, ConfigSplitHeatmap and iupac dictionariessrc/nt_composition/config.py: add R, Y, K, M in nt_listsrc/find_interaction_cluster/nt_and_community.py: linter driven changessrc/figures_utils/config_figures.py: update to add variablessrc/figures_utils/obtain_infos_launch_communities_figures.py: update to deal with down, up and down+up listssrc/figures_utils/study_of_gene_pair_interactions.py: update to deal with down, up and down_up listssrc/figures_utils/graph_2d_3d.py: initial commit of this script that allows to study the biais composition of clusterssrc/figures_utils/quality_control_clusters.py: update of the script descriptionMerge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into devsrc/figures_utils/quality_control_clusters.py: initial commit of this script that allows to control the quality of clusters obtained with different kind of datasRemoving the small test remains and cleaning the import sectionsMerge remote-tracking branch 'origin/dev' into devGenerating the test with 1000 simulations of this versionsrc/find_interaction_cluster/community_figures/fig_functions.py: change community figures lookmerge devMerge remote-tracking branch 'origin/dev' into devCommitting config_ppi.py to test the gpg signatureMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devfix erroradd color_scale parametersrc/find_interaction_cluster/Heatmap_composition/__main__.py: add color scale parmatersrc/figures_utils/resume_tables.py: initial commit of this script that allows for each method of clusterisation (Hi-C, TAD and ChIA-PET) to generate a table with different kinds of information for each cluster (if it is statistically significant)Merge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into dev