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Created with Raphaël 2.2.025Oct28Sep221413118Aug27Jul181313Jun830May251795229Apr282622211531Mar181542128Feb2523161514111026Jan2524212019131176Dec15Nov12985229Oct251121Sep1716131Aug1913927Jul242221191716151413129876532129Jun2216141198312May107430Apr292323Mar19225Feb22179852127Jan25222120191815131275417Dec1627Nov2625242320191716629Oct28272625Sep24177Aug415Jul1063130Jun2625231918171210910Apr9627Mar2611109654src/figures_utils/quality_control_clusters.py: initial commit of this script that allows to control the quality of clusters obtained with different kind of datasRemoving the small test remains and cleaning the import sectionsMerge remote-tracking branch 'origin/dev' into devGenerating the test with 1000 simulations of this versionsrc/find_interaction_cluster/community_figures/fig_functions.py: change community figures lookmerge devMerge remote-tracking branch 'origin/dev' into devCommitting config_ppi.py to test the gpg signatureMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devfix erroradd color_scale parametersrc/find_interaction_cluster/Heatmap_composition/__main__.py: add color scale parmatersrc/figures_utils/resume_tables.py: initial commit of this script that allows for each method of clusterisation (Hi-C, TAD and ChIA-PET) to generate a table with different kinds of information for each cluster (if it is statistically significant)Merge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into devsrc/figures_utils/obtain_infos_launch_communities_figures.py: add commentssrc/figures_utils/obtain_infos_launch_communities_figures.py: add commentssrc/figures_utils/obtain_infos_launch_communities_figures.py: update to produce a file with the biological complexes and their genes merged, if there are several ComplexID with the same ComplexName, only if the size is > 1src/figures_utils/obtain_infos_launch_communities_figures.py: add lines of code to do it with complexes data: complex portal and corumMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devsrc/find_interaction_cluster/ppi_scripts/config_ppi.py: delete variable bed_ensemblsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: update signature graphsrc/db_utils/frequency_scripts/config_freq.py: update to add diaaMerge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into devsrc/db_utils/frequency_scripts/orf_frequency_functions.py: update to add diaasrc/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: update to add diaaMerge branch 'dev' of https://gitbio.ens-lyon.fr/LBMC/regards/chia-pet_network into devsrc/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figuressrc/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figuressrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified output_folder argument to requiredsrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified data_type argument to requiredsrc/figures_utils/study_of_gene_pair_interactions.py: update to modified arguments to not requiredsrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified arguments to not requiredsearch_ppi_from_clusters : initial commitsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add community node and param_community parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix get_node_id_by_label functionsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix the way to found ancestor node by labelsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add a root levelsrc/find_interaction_cluster/Heatmap_composition/config.py: Add periodic_dic parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add related input parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add display parameter